LOC110528080


Basic Information

Item Value
gene id LOC110528080
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58627335 ~ 58629263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474188.2
GTTGAAAGTGTGTCACATCGGAATTGAGAAACCCCTGACGGCAGTGTGCAATTTCGGGCCAGGCCCAATGTAGGCGGAGTCAAACGCGTTTAACCCGAACGCTTCCCGTCTCCTTCAACGTCACCCAAATTGAGGCACAACGTCTACGAAAGCGAACCTTAATTGAGCCTAGCCAACATGGATAAAAATATAGACCATGGAATACGCTCTGTACATTGCAATGGAAGCACAGTGTGATTTCACTGAGGAGGATGTAAAAGACGCCCTCCCAAGAAGTCACAGCATGTCACATCAGCATCCAGCTCTGCAGGATCAGACGATACTGAAAACAAAACACGACGAACTGTGAACTGGGAAGCAGATGTTCTTCTAAGGGACACCCTAGAGGCAGCGAACATTTAAAGGCACTGTTTACCCTCCCTAGTGTAATTGGGATGGACGGGGAAGACCGCATTACAATCCTTAAAGAACTACGGTTGTATGATGGCCTGGATGAAGAGGAAAATATTCTCCTCAAGGAACCATTCATGTTCCAGAGAGATGATGAGATGTTCTATGTGGAGGCAGTTGACAACAAGAACATTACTGTCTTTGCCTCTTTTGAGGAgcaggggcctgttgcacaaaactaggataagggattaagccaggatatcttggtgatcctggctcaattgatccgtaatccggttgcactaaagatggatagggggcaggaggat

Function

NR:

description
uncharacterized protein LOC111197416

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474188.2 True 722 mRNA 0.47 5 58627335 58629263

Neighbor

gene id symbol gene type direction distance location
LOC110528074 LOC106583092 coding downstream 8234 58591066 ~ 58619101 (-)
LOC110528071 LOC106583097 coding downstream 170477 58452974 ~ 58456858 (-)
LOC110528070 LOC106583098 coding downstream 175108 58440240 ~ 58452227 (-)
LOC110528069 LOC106583062 coding downstream 190181 58425680 ~ 58437154 (-)
LOC110528067 LOC106583063 coding downstream 282132 58322868 ~ 58345203 (-)
ccnd3 LOC106583090 coding upstream 26546 58655809 ~ 58662211 (-)
LOC110528082 LOC106583086 coding upstream 52468 58681731 ~ 58687794 (-)
LOC110528083 LOC106583085 coding upstream 63965 58691817 ~ 58695856 (-)
sfrs3 sfrs3 coding upstream 79015 58707572 ~ 58713630 (-)
LOC118965303 LOC106565665 coding upstream 214416 58843679 ~ 58845368 (-)
G628997 NA non-coding downstream 6701 58620334 ~ 58620634 (-)
G628996 NA non-coding downstream 7540 58619565 ~ 58619795 (-)
G628988 NA non-coding downstream 38345 58587072 ~ 58588990 (-)
G628969 NA non-coding downstream 59473 58566568 ~ 58567862 (-)
G628966 NA non-coding downstream 64304 58562403 ~ 58563031 (-)
G629001 NA non-coding upstream 11409 58640672 ~ 58641472 (-)
G629117 strip1 non-coding upstream 183531 58812794 ~ 58816065 (-)
G629124 NA non-coding upstream 192205 58821468 ~ 58823848 (-)
G629056 LOC106583079 non-coding upstream 208575 58837838 ~ 58848423 (-)
G628714 NA other downstream 509213 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 754004 57872050 ~ 57873331 (-)
LOC110528040 NA other downstream 1568765 57052191 ~ 57059527 (-)
vamp3 vamp3 other downstream 1757884 56853567 ~ 56869607 (-)
G630132 NA other upstream 1118187 59747450 ~ 59752591 (-)
G630227 NA other upstream 1286716 59915979 ~ 59917551 (-)
G630747 NA other upstream 1453783 60083046 ~ 60083857 (-)

Expression


Co-expression Network