LOC110528082 (LOC106583086)


Basic Information

Item Value
gene id LOC110528082
gene name LOC106583086
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58681731 ~ 58687794 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609879.2
ttctccctccatcatctgTGCCTCTGCTCACACAGCCGTGATAGAGCAGGACCGCTAGTATTTGCACTCAGACAgcgagaaggggaaagagagagagtgagggagcgaaagaaagagacagacagagcaagcgTAAGATacaaagggggagaaagagagcaacagcagagacaccgagagagagagagagagatggaggaagacagggaggcTGCAGACATCTTTGTTATCAACAATGGAGCATGAAGCTCTGGTAAGGCGATAGGCAGATATTGGGTAGGGGAGAGACATTGAGGAAAGAGGGTCTCGTGTGACCacaggggggaggaaggaggagaaggaggaagtggaggagaagGATGGGCCTCGAACACAGACCTGCAGTGGCACTGCCAATCCTGGATTAAACAGTATGCTGGATAAAAGCGAAGTGACAACATTGGGCCTGCCCCCCTCAGCCAGCCATGGCGGCTCTGACGGTAACATCAGCTTGGATGGGGCTGGGGTGGGTGTGGGGGCGGGGGCAGTGGCCGGGTTGGGGACTGTGGCTGGAGGGGCTGAAGGGGTCTCTGAGCCTCAGCGAACGCGGGTCGCTCTGGAGCACCTGCAGCAGAAGATCCTGAAGATAACTGAGCAGATTCGGATAGAACAGGAGGCAAGAGATGACAACGTAGCCGAGTACTTGAAGCTGGCCCACAACGCAGACAAGCAGCAAGCCTCGCGCATCAAACAGGTGTTTGAGAAGAAGAACCAGAAGTCTGCACAGACCATCGCCCACCTGCACAAAAAGCTAGAGCACTACCACAAGAAGCTGAaggagacagagcagAATGGTCCAGCCCGTCAGCCTAAGGATGTGCTGCGGGACATGCAACAGGGGCTGAAGGACATGGGGGCCAATGTACGAGCCGGGTTCCATGGCTTTGGCGGGGGTATGGTGGATGGGGTCAAAGGAGGGGTAGAAGGGGTCAAAGGAGCTGTGGTGTCCAAGCCACGGGAGTTCGCCAGCTTGATCCGCAACAAATTTGGCAGTGCAGACAACATCTCCCACCTCATAGAGGACGGGGTGGGAGGGCACTCGGAGGACGCGCCCGCTCAACGAGCCCTGAGTGGCAGTGCCACCCTTGTCTCCAGCCCCAAGTACGGTAGCGACGACGAGTGCTCCAGTGCCACCTCTGGCTCAGTGGCAGGCAGTCACTCAGGCGGGGCTGGGGTAGGAGGTGGGATGTCGGGGCAAGGGCAGGCTGGCCTGGGGAGCCCCAGACTGGAtgggcaccaccaccaccaccaccaccacattcaCAGCTCCTGGGACGCCTTGCTGGAAGGCCTGCAGGAGATCAAGGCCAGCCAGGCCCACATGGAGGATGCCATCGAGGACATGAAGAGTCAGCTGCAGAGTGACTACTCCTACATGAACCAGTGCCTGCAGGAGGAGAGATACAGGTATGAGCGACTGGAAGAGCAGCTGAATGACTTGACAGAGCTGCACCAAAACGAAATGACTAATCTGAAACAAGAGCTGGCCAGCATGGAGGAGAAAGTGGCCTACCAGTCCTATGAGAGAGCCagagacatacagGAAGCGGTGGAGTCGTGCCTGACCCGCATCACTAAGTTGGagctccagcagcagcagcagcaggtggTGCAGTTGGAGGGCGTGGAGAACGCCAACGCCCGCGCCCTGCTGGGCAAACTCATCAACATCATCCTGGCACTCATGGCCGTAGTGCTGGTGTTCGTCTCCACCCTGGCCAACTTCATCACCCCACTCATGAAAACCCGAGCGCGGGTGGCCACCACCGTCATGCTGGCCCTGTTTCTGTTCATCCTTTGGAAGCACTGGGACTTCCTGGAGCTGTGGCTAATGCCCAGCTGAGTTTCCTACAGCCAATCACCCACGCCCTTGTGTCTGAATGACCAGGATGTGGACAGAGGGACCAGAGTGATTCACTGAGCTGCCCTAGACACTCTAACAGTCTGAAACTCAGAGAGCGTGAATACAAAACTCATATTTCTGAAAGAGAACCAGTGCACTTTTTTGATAGGATTTATGCTCAGAGAGTCGTACTTAAGAGGGTTGAAAGGTCAAAACATTTCTTTACAAAGCAACTGGCGAAGACTTCCTtcggatgggggggggggggggcatttctgGTTGACTGATGGTCGAGAGAGAGACATTTAAGGAAGAGTGTTGGGTGTTTTATGGTGATTACCATGACAAGGAACCTGAGGAACTATCTGCCTGGTCGCTTGGCAACTCAAGCATTTGCTCTTTCTCATGACCAATCTAGTGGTGTCAACTCGCCATTGTACTGTAGTCACTATGACCTAATTACAATTCGAGAATTCATGTTGAaattctttgacacatttttctAATGTTAGTATAGGTCTACACTTAAAAATTAAAATGGATAAAAGAACAAATTATACTTTGTCTTTGCTAAACCATGTTTGCTGTTACCTTTTTGTTGAGCCAATTGTATATTTGGAGGACAAGGCCAAGCAAAAAGATTGTTTTTTTGCTCAATGTTAGGGTATGTACTACTCATGCATGTCCTCacgtgcatttatacctgtgtgaTGCACTTGGCATGAGTAGCATTCCAACACCAACAGAAATACTCTTTGGACTTAATAACATTCTGTTGTCTGTAGACAGTTTCTacctaaatgttttttttaaactttcatCTCCATATTATTTTTAAAACAGTCAACTCAATCTCTTCTGGTGTTTAAAACTACACCTTTTTTGGTGTATCAGTCATTTTAGTGTCTTATGTGCGATGTAAAGAAGAATTTGAGGGCCAGAAAGTAATCTGGTGAGATGGATCATCAAAACTACTAAATTATCTATAATCTATTCTGAGCATCAATGCTATTTTATAACCACTGTTGTTGTAGAGCAGCTAAGAATATATGTAGTGTCAGATTCATAGGCATGTTAGACCATTGCTTCCATATTTCTATCCAGTTTGCGAAATCCATCACAACTCTGTTGCATTCTTAATAAATACATTCTTAAACTATA

Function

NR:

description
transmembrane and coiled-coil domains protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609879.2 True 3043 mRNA 0.50 5 58681731 58687794

Neighbor

gene id symbol gene type direction distance location
ccnd3 LOC106583090 coding downstream 19520 58655809 ~ 58662211 (-)
LOC110528080 NA coding downstream 52468 58627335 ~ 58629263 (-)
LOC110528074 LOC106583092 coding downstream 62630 58591066 ~ 58619101 (-)
LOC110528071 LOC106583097 coding downstream 224873 58452974 ~ 58456858 (-)
LOC110528070 LOC106583098 coding downstream 229504 58440240 ~ 58452227 (-)
LOC110528083 LOC106583085 coding upstream 5434 58691817 ~ 58695856 (-)
sfrs3 sfrs3 coding upstream 20484 58707572 ~ 58713630 (-)
LOC118965303 LOC106565665 coding upstream 155885 58843679 ~ 58845368 (-)
LOC110528983 LOC106565665 coding upstream 158673 58846467 ~ 58868216 (-)
LOC110528090 LOC106583075 coding upstream 202207 58890001 ~ 58895798 (-)
G629001 NA non-coding downstream 40259 58640672 ~ 58641472 (-)
G628997 NA non-coding downstream 61097 58620334 ~ 58620634 (-)
G628996 NA non-coding downstream 61936 58619565 ~ 58619795 (-)
G628988 NA non-coding downstream 92741 58587072 ~ 58588990 (-)
G629117 strip1 non-coding upstream 125000 58812794 ~ 58816065 (-)
G629124 NA non-coding upstream 133674 58821468 ~ 58823848 (-)
G629056 LOC106583079 non-coding upstream 150044 58837838 ~ 58848423 (-)
G629152 NA non-coding upstream 220440 58908234 ~ 58908581 (-)
LOC110528069 LOC106583062 other downstream 252360 58425680 ~ 58437154 (-)
G628714 NA other downstream 563609 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 808400 57872050 ~ 57873331 (-)
LOC110528040 NA other downstream 1623161 57052191 ~ 57059527 (-)
vamp3 vamp3 other downstream 1812280 56853567 ~ 56869607 (-)
G630132 NA other upstream 1059656 59747450 ~ 59752591 (-)
G630227 NA other upstream 1228185 59915979 ~ 59917551 (-)
G630747 NA other upstream 1395252 60083046 ~ 60083857 (-)

Expression


Co-expression Network