LOC110528083 (LOC106583085)


Basic Information

Item Value
gene id LOC110528083
gene name LOC106583085
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58691817 ~ 58695856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609881.2
tgtggaaagccttcccagaagagttgaggctgttatagcagcaaagaagGTGTAGAACCAGAACAACCATGGCCAGTTCTAAGTGGATTCTGAGCTCCCTGGGGAAAGGTCCTGCCAGACGGAACCTGTTTGGCCCAGTGGACCATGAGCAGCTGCAGCAGGAGTACCAGAATGCCTTGCGCAGAGACCTGGAGGACGCCTGCCACCGCTGGGGCTTTGATTTCCTGTCAGAGAAGCCTCTGGCTGGGGGAGACTTCCAGTGGGAGGGGGTTCTAAGCACCAAGCTGCCTCTCCTCTACCAACCCTGCCTTTTGGGTCAGGGGGAGGCACAGATGGAGGGAGGCCTGGTGGCCATCACAGGGAGGGTCAGGGCAGGGCCTTTGCACCGTGGCAAAGAGAATATCCCTTGCACCCCTGAGAAGTGCATAGCCAACCACCAGAATCTGGAGAAAACACCAGACAAGAAGGAGAACACCAACCACAATGAAAACAGACTGACCACGAAACAGACCGAAGACTAAACAGACCAACCTCACAGGCAGGAGCGTTTGTGTCGTGTGTGGATGTAGAGATTTCTACCAAGCCAAGAAGAGAGTGGTGGGTACGCAGTGTAAGTCAGACCAGTGATTTCAGGGCACACAGTCACAGCTGCCAGGGAGCCAACATTCGGGACAGAACCACAGCAAACACTACTTCTCGCAGGAAcccacac
>XM_021609880.2
TTTGCCCAGGCATGTACTGTACTAGATCAGGACAGTAGGAGGGCTTTATGAATCATAGTCTGATGGCAAGCAGTTAAATAGAACTGCAGCATCCtgaacacacagtccagtttTTTGAGAGAGATTTACTTGTGCATAAATGTGTAGAACCAGAACAACCATGGCCAGTTCTAAGTGGATTCTGAGCTCCCTGGGGAAAGGTCCTGCCAGACGGAACCTGTTTGGCCCAGTGGACCATGAGCAGCTGCAGCAGGAGTACCAGAATGCCTTGCGCAGAGACCTGGAGGACGCCTGCCACCGCTGGGGCTTTGATTTCCTGTCAGAGAAGCCTCTGGCTGGGGGAGACTTCCAGTGGGAGGGGGTTCTAAGCACCAAGCTGCCTCTCCTCTACCAACCCTGCCTTTTGGGTCAGGGGGAGGCACAGATGGAGGGAGGCCTGGTGGCCATCACAGGGAGGGTCAGGGCAGGGCCTTTGCACCGTGGCAAAGAGAATATCCCTTGCACCCCTGAGAAGTGCATAGCCAACCACCAGAATCTGGAGAAAACACCAGACAAGAAGGAGAACACCAACCACAATGAAAACAGACTGACCACGAAACAGACCGAAGACTAAACAGACCAACCTCACAGGCAGGAGCGTTTGTGTCGTGTGTGGATGTAGAGATTTCTACCAAGCCAAGAAGAGAGTGGTGGGTACGCAGTGTAAGTCAGACCAGTGATTTCAGGGCACACAGTCACAGCTGCCAGGGAGCCAACATTCGGGACAGAACCACAGCAAACACTACTTCTCGCAGGAAcccacac
>TU715184
aagcaagtccctccaacatcttgtggaaagccttcccagaagagttgaggctgttatagcagcaaagaagGTGTAGAACCAGAACAACCATGGCCAGTTCTAAGTGGATTCTGAGCTCCCTGGGGAAAGGTCCTGCCAGACGGAACCTGTTTGGCCCAGTGGACCATGAGCAGCTGCAGCAGGAGTACCAGAATGCCTTGCGCAGAGACCTGGAGGACGCCTGCCACCGCTGGGGCTTTGATTTCCTGTCAGAGAAGCCTCTGGCTGGGGGAGACTTCCAGTGGGAGGGGGTTCTAAGCACAGATGGAGGGAGGCCTGGTGGCCATCACAGGGAGGGTCAGGGCAGGGCCTTTGCACCGTGGCAAAGAGAATATCCCTTGCACCCCTGAGAAGTGCATAGCCAACCACCAGAATCTGGAGAAAACACCAGACAAGAAGGAGAACACCAACCACAATGAAAACAGACTGACCACGAAACAGACCGAAGACTAAACAGACCAACCTCACAGGCAGGAGCGTTTGTGTCGTGTGTGGATGTAGAGATTTCTACCAAGCCAAGAAGAGAGTGGTGGGTACGCAGTGTAAGTCAGACCAGTGATTTCAGGGCACACAGTCACAGCTGCCAGGGAGCCAACATTCGGGACAGAACCACAGCAAACACTACTTCTCGCAGGAAcccacacagacactggacacagAGTGGATACTTACCTGGAGGAATACATAACCAATACTCTAGACAAATGCAGGGGGAAATTAAACAACCTCTTTTATTGCATCCATTACCAATGCATACTGTAAAAATAAATGCATGAGATCCATGTATGGTTAACCGATGTACTAATGATTTCAATGTAAGGGGGCTTGTGTTCTTCCTGTGGTAAGGGAGGGACATTCAAGCAGTACAAATGATGCATCCATGTTCATTTGTGAGTCATGTAAGGACATCCTCTAAAACCCTATGACCTTTTGGTGTAAAGGGGACTTTTGCTATAAGAGCTCACCGTCTGGACAGGTAAGTTCCTGTATGACATTCCACAGCACTGAAATGGACCAATCAAAGCCCTGCCTCTGGGTCTACCCTTAACCCCTCTTGTCTTGATGACATCTTGAAATTATGAAAACATACTGTTTATGGTAGAGGTTGAATCTACTACAATATACTGTCACATTGAGAGGACTCATTGAAAAATGACCCCAACAACACAATAGCTTTTTAAAGTATTTCTGGTTCATATGTCCaaatgtattgattgatgttattttatttcaTGTTTTTTCATTTTGCTGTATTTCTTGTGAAGAACGCCAGAATCATGTTATTGTCTGTCTTTTGCAAGCACTTCCTGCCCAAAGTATGTATTTTTGTACATATTGTGTAAATTTGTGAAATCTCAACATGTACTTATAGGAAACTAGTGGAAGAGTACTGTAATGAATAATACTGTTATGCTTATAATGCAAATTCCTATATAGGAAATGTCACCAATGTCCTCCACCTTCTATCTAACTAGGGCATTTTGCTATAATACTCCTGGGAATTTGTTGATGGGTACCTCCCCAATACTCTTTCATGCTTTTCTGAACACAAGGCCAGACATGAAAGTTTCCTTTGAATAGTATCAGAGATGTATGTTTTCTTTCAGTATTGCTCAATATTTTTAATTTAGCCCACAGCAGGTGCATCAAGGGACTCAAATTAGTCAAGTGCATGTATGGTATTTTAATCTAAACAGGGAAATTGATTCCTCAAAAACACGTAGCTATTTTAGAGTAAGCTACAGCCAAGTGTAAGTGCAGTAAAATACACATTAAGTGTTTTTATCTGCCTCAAACTAAGGTCCATCACGGACCACGGTTAGACACGTCTCTGTCATGACAATTCTTCATGAAAACGGAAATTCTTCATATTCTGCTAATAACATGCATTACACCAAAACATGCATTTGTTTTATAGATGTTGGTGCACAAGTCCTACATAGGGTTTATGCTCAAAGCTACAACTAAAATATGATTTATTGTGAAATAAGGTAGATATGTG
>TU715185
CATCCtgaacacacagtccagtttTTTGAGAGAGATTTACTTGTGCATAAATGTGTAGAACCAGAACAACCATGGCCAGTTCTAAGTGGATTCTGAGCTCCCTGGGGAAAGGTCCTGCCAGACGGAACCTGTTTGGCCCAGTGGACCATGAGCAGCTGCAGCAGGAGTACCAGAATGCCTTGCGCAGAGACCTGGAGGACGCCTGCCACCGCTGGGGCTTTGATTTCCTGTCAGAGAAGCCTCTGGCTGGGGGAGACTTCCAGTGGGAGGGGGTTCTAAGCACAGATGGAGGGAGGCCTGGTGGCCATCACAGGGAGGGTCAGGGCAGGGCCTTTGCACCGTGGCAAAGAGAATATCCCTTGCACCCCTGAGAAGTGCATAGCCAACCACCAGAATCTGGAGAAAACACCAGACAAGAAGGAGAACACCAACCACAATGAAAACAGACTGACCACGAAACAGACCGAAGACTAAACAGACCAACCTCACAGGCAGGAGCGTTTGTGTCGTGTGTGGATGTAGAGATTTCTACCAAGCCAAGAAGAGAGTGGTGGGTACGCAGTGTAAGTCAGACCAGTGATTTCAGGGCACACAGTCACAGCTGCCAGGGAGCCAACATTCGGGACAGAACCACAGCAAACACTACTTCTCGCAGGAAcccacacagacactggacacagAGTGGATACTTACCTGGAGGAATACATAACCAATACTCTAGACAAATGCAGGGGGAAATTAAACAACCTCTTTTATTGCATCCATTACCAATGCATACTGTAAAAATAAATGCATGAGATCCATGTATGGTTAACCGATGTACTAATGATTTCAATGTAAGGGGGCTTGTGTTCTTCCTGTGGTAAGGGAGGGACATTCAAGCAGTACAAATGATGCATCCATGTTCATTTGTGAGTCATGTAAGGACATCCTCTAAAACCCTATGACCTTTTGGTGTAAAGGGGACTTTTGCTATAAGAGCTCACCGTCTGGACAGGTAAGTTCCTGTATGACATTCCACAGCACTGAAATGGACCAATCAAAGCCCTGCCTCTGGGTCTACCCTTAACCCCTCTTGTCTTGATGACATCTTGAAATTATGAAAACATACTGTTTATGGTAGAGGTTGAATCTACTACAATATACTGTCACATTGAGAGGACTCATTGAAAAATGACCCCAACAACACAATAGCTTTTTAAAGTATTTCTGGTTCATATGTCCaaatgtattgattgatgttattttatttcaTGTTTTTTCATTTTGCTGTATTTCTTGTGAAGAACGCCAGAATCATGTTATTGTCTGTCTTTTGCAAGCACTTCCTGCCCAAAGTATGTATTTTTGTACATATTGTGTAAATTTGTGAAATCTCAACATGTACTTATAGGAAACTAGTGGAAGAGTACTGTAATGAATAATACTGTTATGCTTATAATGCAAATTCCTATATAGGAAATGTCACCAATGTCCTCCACCTTCTATCTAACTAGGGCATTTTGCTATAATACTCCTGGGAATTTGTTGATGGGTACCTCCCCAATACTCTTTCATGCTTTTCTGAACACAAGGCCAGACATGAAAGTTTCCTTTGAATAGTATCAGAGATGTATGTTTTCTTTCAGTATTGCTCAATATTTTTAATTTAGCCCACAGCAGGTGCATCAAGGGACTCAAATTAGTCAAGTGCATGTATGGTATTTTAATCTAAACAGGGAAATTGATTCCTCAAAAACACGTAGCTATTTTAGAGTAAGCTACAGCCAAGTGTAAGTGCAGTAAAATACACATTAAGTGTTTTTATCTGCCTCAAACTAAGGTCCATCACGGACCACGGTTAGACACGTCTCTGTCATGACAATTCTTCATGAAAACGGAAATTCTTCATATTCTGCTAATAACATGCATTACACCAAAACATGCATTTGTTTTATAGATGTTGGTGCACAAGTCCTACATAGGGTTTATGCTCAAAGCTACAACTAAAATATGATTTATTGTGAAATAAGGTAGATATGTG

Function

NR:

description
cyclin-dependent kinase inhibitor 1B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609881.2 False 712 mRNA 0.55 3 58693228 58694468
XM_021609880.2 False 804 mRNA 0.53 3 58693228 58695856
TU715184 False 2041 TUCP 0.43 5 58691817 58694489
TU715185 True 2023 TUCP 0.42 5 58691817 58695767
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110528082 LOC106583086 coding downstream 5434 58681731 ~ 58687794 (-)
ccnd3 LOC106583090 coding downstream 31017 58655809 ~ 58662211 (-)
LOC110528080 NA coding downstream 63965 58627335 ~ 58629263 (-)
LOC110528074 LOC106583092 coding downstream 74127 58591066 ~ 58619101 (-)
LOC110528071 LOC106583097 coding downstream 236370 58452974 ~ 58456858 (-)
sfrs3 sfrs3 coding upstream 12422 58707572 ~ 58713630 (-)
LOC118965303 LOC106565665 coding upstream 147823 58843679 ~ 58845368 (-)
LOC110528983 LOC106565665 coding upstream 150611 58846467 ~ 58868216 (-)
LOC110528090 LOC106583075 coding upstream 194145 58890001 ~ 58895798 (-)
LOC110528094 LOC106583073 coding upstream 252600 58948456 ~ 58970820 (-)
G629001 NA non-coding downstream 51756 58640672 ~ 58641472 (-)
G628997 NA non-coding downstream 72594 58620334 ~ 58620634 (-)
G628996 NA non-coding downstream 73433 58619565 ~ 58619795 (-)
G628988 NA non-coding downstream 104238 58587072 ~ 58588990 (-)
G629117 strip1 non-coding upstream 116938 58812794 ~ 58816065 (-)
G629124 NA non-coding upstream 125612 58821468 ~ 58823848 (-)
G629056 LOC106583079 non-coding upstream 141982 58837838 ~ 58848423 (-)
G629152 NA non-coding upstream 212378 58908234 ~ 58908581 (-)
LOC110528069 LOC106583062 other downstream 263857 58425680 ~ 58437154 (-)
G628714 NA other downstream 575106 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 819897 57872050 ~ 57873331 (-)
LOC110528040 NA other downstream 1634658 57052191 ~ 57059527 (-)
vamp3 vamp3 other downstream 1823777 56853567 ~ 56869607 (-)
G630132 NA other upstream 1051594 59747450 ~ 59752591 (-)
G630227 NA other upstream 1220123 59915979 ~ 59917551 (-)
G630747 NA other upstream 1387190 60083046 ~ 60083857 (-)
LOC110528989 LOC106583145 other upstream 2042639 60699279 ~ 60822525 (-)

Expression

LOC110528083(LOC106583085) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
End of interactive chart.

LOC110528083(LOC106583085) Expression in each Bioproject

Bar chart with 19 bars.
LOC110528083(LOC106583085) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network