LOC110528088 (LOC106583080)


Basic Information

Item Value
gene id LOC110528088
gene name LOC106583080
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58825054 ~ 58834303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609894.2
TCCAGTCAGTGGTATCAGTTTGCTCTCAGTTATGGCAGTGTCTGGTGTATCAGTCAGGATGGACCACCTCAGCTGTCCACTCTGTCAGGAGGTGCTCAGGACTCCTGCTGCTATTCCATGTGGGCACACCTTCTGCAGTCTCTGCATCCAGGACTTCTGGGACAATGAAGAAAAGCATGGTCGTTTCTGCAGCTGCCCTGAATGCCAATATACCTTTCACCCGAGGCCTAACCTGATCAAGAACATTGCTCTGGCTGAAATGGTGGAAGCCATGGAGAAGTCCAGGCGTAGAAATAATGTGGGTTCCGTAGGTAAGCACAGACCTGCTGCAGCCTGCCATCAGGCAGGGCCATCGTCCAGTCAGACTCAGGAAAAGGCCAGACCCATGAAGAGTCCCCAAACCCCTACAGTCTCAGAGGCCCTGAAGAGCAGAGTATGTCCCACACATGACAGACTGCTGGAGGTTTACTGCTGTGATGATGATCAATGCATCTGCCTTCTGTGCGCCCTGGTTGAGCACAAAGCACACTCCACTTTGTTCGTGAATGAGGGATGGAGCAGGAAACAGAAACAGCTCCAGGACCTTAAGAAGGAATCAAAAAGAAGGatcaaaaagagagaaaaggagcagAAGGACCTGACAGAGAGCATACAGAGGATTAAGGAAGGTAGTAGGGCTGCTGAAGAGCACTGCGAGGGCGTCCTCGCTGGGCTGATTGACTCCCTCCAGAGGCACTACTCCACCACAGTCAGAGAGCTGATCAGGGCCCAGGAGACAGCTGTAGTGGCTCAGGCTGAGAGCTCCCTGTGCAACCTGGAGACAGACATTGCTGAGCTGAAGAAGAAAGACACTGAGCTGGAGGAGCTGTCACAGACAGATGATGATATCCACTTCCTCCAGAGTTGGCCCTCTCTGTCAACCCTCTCAGAGCCCCAAAACTTGTCCAGTGTCTCGACAGATCCACACCTCCCCTTTGAGGCCATAAGAACTGCCGTTTCAGAGTTTGGGGATCGGCTGGAGTCATTCTTGGCTGGTAATGGAAGTTCCCAATCTCCAGTCAGACCTGAGCAGCTTCCAGTTATCAGCGCTGCACAGACCCTAGAGCCTACGACCAGATCTGAGTTTCTACAGTATGCCTGTGAACTCACTCTGGACCCCAACACTGCCCACAAGGACCTCTCCATCTCAATGGAGGACAGAATGGTGAGGTGGGACCCTAAAAAGCAGAAGGTCCCAGTCCAACCTCACCCTGAGAGGTTTACAAACCGTCACCAGGTGATGTGCAGGGAGGGGCTTGAGGCTGAGCGCTGCTACTGGGAGGTGGAGATGGTGGGGAACAAGGCTGAGATTGCCCTGGTCTACTGGGGCATAAACAGAAAATCACGCTCTAAGACATCCGCTTTTGGGGGCAGTGACCAATCCTGGAGCCTCGACTGTTCAAAAGGATATTCTGTGTCCCACAACAATAAAAGTATTCTACTCAGTGCAACCCCCAGCCAGCACAAAATAGGGGTTTACCTGAAATTCAAGGAGGGCACCATAGCATTTTATGAAGTCTCAGATAGGATGACGTTTCTCTACAGAACACAGAAATACACATTTACTGAACCCCTCTACCCAGGGTTCTGGCTTGGGGACGAGAGTCCCATCACACTATGTAATCTGAGGCATAAGAGATTCTAACCATGAGATAGAGAACAAAACACCCAGGAAGAGTAGGCTGTGGATAGAAGTTTAAAATAAAGCTATGCATTCGGAAAATGAATGCATGAAAATtcaaaactgtttttgttttgtcattatgtggtattgcgtgtagattgatgaggaaaaaaaacatttcatccACTTTAGAATAAGCGTAGACAAAACGTGGAAatagtgaaggggtctgaatacatccCGATGCACTGTACATCCCGATGCACTGTACATCCCGATGCACTGTACATCCCGATGCACTGTACATCcccaatgcactgtacatccccaatgcactgtacatccccaatgcactgtacatccccaatgcactgtacatccccaatgcactgtacatccCGATGCACTGTACATCCCGATGCACTGTACATCCCGATGCACTGTACATCCCGATGCACTGTACATCcccaatgcactgtacatccCGATGCACTGTACATCcccaatgcactgtacatccccaatgcactgtacatccCGGAGAACATTTGAAAGGTTTTAGATTGCTGTTAGGTTTTGGGGAATCTTATTGTCTAAATAGATTGTAAACCTCTAAATGTTTTCATGGTTACCCTCTTTACATTTgtaatatcttttttttttataaacagttttataaatatacatataaaaGCAGCGAATAAAGAGCAAAAGTGTTG

Function

NR:

description
tripartite motif-containing protein 16-like protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609894.2 True 2382 mRNA 0.48 7 58825054 58834303

Neighbor

gene id symbol gene type direction distance location
LOC110528087 LOC106583081 coding upstream 8968 58804760 ~ 58816086 (+)
LOC110528086 LOC106583082 coding upstream 24932 58737859 ~ 58800122 (+)
LOC110528084 LOC106583083 coding upstream 87425 58728133 ~ 58737629 (+)
LOC110528081 LOC106583088 coding upstream 147500 58671063 ~ 58677554 (+)
LOC110528982 NA coding upstream 156803 58665542 ~ 58668251 (+)
LOC110528089 LOC106583079 coding downstream 977 58835280 ~ 58841319 (+)
LOC110528091 LOC106583076 coding downstream 44630 58878933 ~ 58889711 (+)
LOC110528092 LOC106583074 coding downstream 80879 58915182 ~ 58920830 (+)
LOC110528093 gnai3 coding downstream 91637 58925940 ~ 58932441 (+)
LOC110528095 LOC106565671 coding downstream 135423 58969726 ~ 59022859 (+)
G628476 NA non-coding upstream 106406 58712897 ~ 58718648 (+)
G628458 NA non-coding upstream 201719 58622608 ~ 58623335 (+)
G628457 NA non-coding upstream 204828 58619967 ~ 58620226 (+)
G628451 NA non-coding upstream 214686 58610111 ~ 58610368 (+)
G628371 NA non-coding upstream 234707 58590098 ~ 58590347 (+)
G628478 NA non-coding downstream 8977 58843280 ~ 58852652 (+)
G628566 NA non-coding downstream 56825 58891128 ~ 58894932 (+)
G628572 NA non-coding downstream 72124 58906427 ~ 58906692 (+)
G629165 NA non-coding downstream 87933 58922236 ~ 58922541 (+)
G628468 LOC106583084 other upstream 111470 58708295 ~ 58713584 (+)
LOC110528980 LOC106583093 other upstream 320977 58502198 ~ 58589001 (+)
LOC110528055 LOC106583107 other upstream 833182 57917801 ~ 58055214 (+)
G627035 NA other upstream 1229003 57542882 ~ 57596051 (+)
snrpe ruxe other upstream 1502033 57319669 ~ 57323047 (+)
LOC110528099 LOC106583069 other downstream 234367 59068637 ~ 59084729 (+)
G629678 NA other downstream 850028 59684331 ~ 59684763 (+)
G629679 NA other downstream 850569 59684872 ~ 59685187 (+)
LOC110528122 LOC106583221 other downstream 871650 59705922 ~ 59712261 (+)

Expression


Co-expression Network