LOC110528089 (LOC106583079)


Basic Information

Item Value
gene id LOC110528089
gene name LOC106583079
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58835280 ~ 58841319 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983640.1
CATTATTTCTTCCCAAACTTAACTACCAAAGGAGAGAGATGATAGCCTGCCGTAATGCTGTTTTTCTTTACCCCTGGGCCTGAAACCTTTTAAATCTCTTCAAAAATGTTGGCGAGGACCGTAGGCTAAACAACATTCCTGGACGTGCAATTCTCTCCCCTCCAGGTCATGATCAGCTCAATGTATGTGTCCTCTCAGGGCCATACTTCAGCCCATGGCCTCGACAGGACTTCATTGACAACATGTCTAAGGGAAGACTGGGACACAAAAGGGGATGTCATGAAAAAGGTTGTGATCAACGTTGGTGGCATGCGTCATGAAACTTACATGAGCACTCTCAAGAGCTTGCCTGGTACCCGATTGGCTAAACTGATGGATCATGACCCAAGTGGTGACATTGAATTCTTCTTCGACAGACATCCAGGTGTTTTCTCCAATGTTCTGAATTATTACAGAACCGgtaagcttcactgtccaaaagATGTCTGTGGTCCCCTTTTTGAAGAGGAGTTGGCTTTTTGGGAGGTCGACAAGGCGGACGTGGAACCTTGTTGCTGGATAACATTCTGCCAACATAGGGATGCCGAAGTGGCCCTTGCAGCGTTCGGGCCATCAGACTCAAAAGAGCACCACAATGAAGAGTTTCCAGAGTCATTCGATGTGGAGGACCACCCAGCTAATTCTCAGAGCTGCTGCAAAAGGTGGAAAGCAAAAATATGGGCTTTATTTGACGACCCGTTCTCGTCTAAGGCTGCCAAGGTCATTGCGTTTGTTTCCCTCTTCTTCGTCCTCCTTTCCATCACAGCTTTCTGTCTGGAGACACATGAGAGCTTCCACACGTTAGAGCAACGCACAGAGCTGGTCAATAATGGGAACCACACAGAAGAGGTGACGTACTATGAGATAGTGACCGAACCTACTCTGACTGTGGTGGAGGGCGTCTGTGTGGTGTGGTTCATATTTGAGTTCCTGGTCCGTTTTACCTGCTGCTCCAACATACTGGTGTTTGTGAAGAACATACTAAACATCATTGACTTTGTGGCCATCCTGCCCTTCTTCCTGGATGTGGGGCTGGGTGGGAATGCCCTGGGCTTCCTGCGTGTGCTGAACTTTGTTAGGATCCTGAGGATCTTTAAGCTGATGCGCCACATGGTGGGAGTACGTGTGTTAGTCTACACACTAAAGGCCAGCGTTCAAGAGTTCTGCCTTCTTGCTGTCTTCTTTGGAATTGGAATGCTAATTTTCAGCACCCTGGAATTCTACGCGGAGCGAGTACATGGTGACCCTGAAGACCCAACTTTGTCTGCGCACACCAATTTTAAGAACATCCCCATAGGCTTCTGGTGGGCGGTGGTTACCATGACAACCCTGGGCTATGGGGACATGTACCCGGAGACCTGTTCCGGCATGGTAATTGGAGCCCTGTGTGCTCTGGCAGGTATTCTGACCATCGCCATGCCTGTCCCAGTCATAGTCAATAACTTCCGCCTGTACTACTCCCTGGCCATGGCCCAACAAAAgctcccaaagaagaagaagaggcaaCACCTGCCCCTGTCTGGAACGCTTAGCCAGCCATCCCCAAGTGGGGAGCAGGTAGAATGATGCCTGTTATCAGGGGAGCGCTCTTGTTCAGAGTGAATCCCGGCGTTAGTCTGGCTATGAGACCCCGGATGTAGAGACTGGATCCTGATTGTACCATTACACCGGATTGGGACATTATAGCTATGTTATACCATCAATAACATtataacattttacattttaatatCTTTATAGACCATTGCATGGGTAAAGGACAAACAATATTTGTTTGTGTGCATTCAAGGTAGTATGTATTATTGGTTTATTCGGATCACCATTAGCTTTTGCTGAAGCAGCAGCTATTTTTCCTGGGGTCCAgacaaaaacataaaacacagcaagtaacaaaacactgacgTACTGGTAGACAAGAacagtcacacaaatgtaaaatgATGCAATATAAAGTTAGTATTCCAAACAtcaagaacaccttcctaacattgagttgcacccccttttgccctcagaacagcctcaattcgtcggggcgtgGACTTTGTCGGGGAAAGGTGTCGGAAGTGTTCCACTGGGAAGCTGGCCCATGTtaacttcaatgcttcccacagttgtgtcaagttggctggatggccattgggtggtggatcattcttgatacacacgggaaactgttaatTCACAGTTGAGAAACTGAGtgtaaaaaacccagcagcgttgcagttcttgacacaaaccgctgcccctggcacctactaccatacccattcaaagacacttacattttttgtcttgcccattcaccctctgaatggcacacatacacaatccatgtctcaattatctcaaggcttaaaaatccttctctaACCTTATATACACTgcttaaagtggatttaacaaattacatcaataagtgatcatagctatcacctgtattcacctggtcaTGGAAAGACCAGGGGTTCTTAATGTTCTCTACACTCATTGTACAAACAACACAACTAAAGAATAATGTGTGTATAGATTGTTTGTGTTAGAGTGTGATAGAGTGTGTGGgcatgtgtttgtttgtatgtgtgtcattTCACAGTCCCTATTGTGCCATGAGATGTTGTTTTATCCATTTGTTTTATgtaattttgctgtttgcttgagtaattggagatggacgggagttccatgcgatcatagctctgtataatactgtgcatTTCCGTGAATTGTTTTGGacatggggactgtgaagagacccctggtggcatggcttgtggggtatgtatgggtgtctgagctgtatCTTATCTGATTATGCAACTTTTATACCAGACATAACCCTCCCCATCTTCACTTTGTCAAAatgacttgaccatgataattGACCATTGAATGTTACCTAGGAGTTCagcttcctcaacttgctcaatggtCACACCCTTTATGCACAACTCCATTTGAGGTTTAGGTCTTAGAGAatgttttgaaccaaatacaatacTTTTGCTGACATGTAGAGTTTTTAATCATATTCAAGTTTCAGTCAAgtaatttacactgaacaaaaatataaacacaacatatgaagtgttggtcccatgtttcatgagctgaaatgaaagagcccagacattttccatgaGCACAAAAAGCTTCTTCCTCTCAAAttttgtaaacaaatttgttcacagtTTGTCCgtgtagtgagcatttctcctttgccaagataatccattcacctgacaggtgtggcatatcaagaaactgattaaacagcatgatcattacatgaGTTAGGGACAATAATtgggcactctaaaatgtgcagttttgtcacacaacacaatgccacagatgttttgagggagcattaaattggcatgctgactgccggAATGTCCACTGCAGgaataaccacgccagcccaggacctcaacattggcttcttcacctgcgggatcgtctgagacgaTATTCTGAGACTAAAcaatattctgattggctggacctggttaccaaatgggtgggcctatgccctgccaggcccacccatggctttgcccctgcccagtcatgtgaaatccatagattagggcctaatgtatttatttcaagTGACTGATTTACTGTAagagtaaaatcgttgaaattgttgcatgtgttAATATTTTGGTTTAGTATAGCTATACTAATTCATTTTACATTAATTGAGCATTGATTTAGACATGTACTTTTCTATATGTGAAACAATGAGTTGAAACAATGCTATTTCTGTCATTTGATCAATACTTGCCTGGTTAATTCTTATTCATGATTTGTTTAGGTGAGAGTGTGAAATCACATTGATATTTGAAACAAAATGGATAATTTATCAGGGGAAATTGAAACACAGATGAAATGCATTATCTTTGATATAAAAACATTACAACCTCTAACAATATTAACACTACAAATTAAAACATTGCAATTATAGTTACTGTATATTCTATAGTTTCTACGTTTCTGTTAAGTAATTTTCTAATTATATGTCACAGTTGGGTGAGAGCGTAACATCACCAcaatgtctgtctgtaataatcATCCGAAATAAAAATGTCTACTGCCTGTG

Function

NR:

description
potassium voltage-gated channel subfamily C member 2-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983640.1 True 4147 mRNA 0.43 3 58835280 58841319

Neighbor

gene id symbol gene type direction distance location
LOC110528088 LOC106583080 coding upstream 977 58825054 ~ 58834303 (+)
LOC110528087 LOC106583081 coding upstream 19194 58804760 ~ 58816086 (+)
LOC110528086 LOC106583082 coding upstream 35158 58737859 ~ 58800122 (+)
LOC110528084 LOC106583083 coding upstream 97651 58728133 ~ 58737629 (+)
LOC110528081 LOC106583088 coding upstream 157726 58671063 ~ 58677554 (+)
LOC110528091 LOC106583076 coding downstream 37614 58878933 ~ 58889711 (+)
LOC110528092 LOC106583074 coding downstream 73863 58915182 ~ 58920830 (+)
LOC110528093 gnai3 coding downstream 84621 58925940 ~ 58932441 (+)
LOC110528095 LOC106565671 coding downstream 128407 58969726 ~ 59022859 (+)
LOC110528097 LOC106583070 coding downstream 193754 59035073 ~ 59042858 (+)
G628476 NA non-coding upstream 116632 58712897 ~ 58718648 (+)
G628458 NA non-coding upstream 211945 58622608 ~ 58623335 (+)
G628457 NA non-coding upstream 215054 58619967 ~ 58620226 (+)
G628451 NA non-coding upstream 224912 58610111 ~ 58610368 (+)
G628371 NA non-coding upstream 244933 58590098 ~ 58590347 (+)
G628478 NA non-coding downstream 1961 58843280 ~ 58852652 (+)
G628566 NA non-coding downstream 49809 58891128 ~ 58894932 (+)
G628572 NA non-coding downstream 65108 58906427 ~ 58906692 (+)
G629165 NA non-coding downstream 80917 58922236 ~ 58922541 (+)
G628468 LOC106583084 other upstream 121696 58708295 ~ 58713584 (+)
LOC110528980 LOC106583093 other upstream 331203 58502198 ~ 58589001 (+)
LOC110528055 LOC106583107 other upstream 843408 57917801 ~ 58055214 (+)
G627035 NA other upstream 1239229 57542882 ~ 57596051 (+)
snrpe ruxe other upstream 1512259 57319669 ~ 57323047 (+)
LOC110528099 LOC106583069 other downstream 227351 59068637 ~ 59084729 (+)
G629678 NA other downstream 843012 59684331 ~ 59684763 (+)
G629679 NA other downstream 843553 59684872 ~ 59685187 (+)
LOC110528122 LOC106583221 other downstream 864634 59705922 ~ 59712261 (+)

Expression


Co-expression Network