LOC118965303 (LOC106565665)


Basic Information

Item Value
gene id LOC118965303
gene name LOC106565665
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58843679 ~ 58845368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983641.1
ACTCTTGAACGCTGGCCTTTAGTGTGTAGACTAACACACGTACTCCCACCATGTGGCGCATCAGCTTAAAGATCCTCAGGATCCTAACAAAGTTCAGCACACGCAGGAAGCCCAGGGCATTCCCACCCAGCCCCACATCCAGGAAGAAGGGCAGGATGGCCACAAAGTCAATGATGTTTAGTATGTTCTTCACAAACACCAGTATGTTGGAGCAGCAGGTAAAACGGACCAGGAACTCAAATATGAACCACACCACACAGACGCCCTCCACCACAGTCAGAGTAGGTTCGGTCACTATCTCATAGTACGTCACCTCTTCTGTGTGGTTCCCATTATTGACCAGCTCTGTGCATTGCTCTAACGTGTGGAAGCTCTCATGTGTCTCCAGACAGAAAGCTGTGATGGAAAGGAGGACGAAGAAGAGGGAAACAAACGCAATGACCTGCAAATGACAAGAAGGGTTATCATATGACTCTGAGTGGATCATCTCATAATGATTAAACATGTGGAAGTACGTCTCCCGTTGTCTCATCGTTCTCATTATGGCTACTGTCATTGAGATGGCCATCAGCCCGCCAGGGTACAATGCATGGGTGGAGGAACTGGCTCAGGAGCGTTTCCAGAGCTACCCTCCCTGGGCATTGGCCATGTGCTTCTCCCTCATCGTGATGGCCATGCTTCCTCTCCCCATCGTCTTCATCGCCCGCCACTTCAACCTGATGTCTGATGGCTCCAACAAGTTGTCCGTCTCCTACCGCAAGAGCATGATGAAGGACATCTCCAACCTGGAGAAGGTGGACGAGATGCACTTCATCCTGGGCAAGAACCCAACAGAGACACCTTTGCCCAAGCCCCCGTCCCAAGCCAACCTAGTCCCCCCAGGCACCAAACCCCTGGAGAACTCCAACTCCTCGTCCGCCAACAGCTGCTACCGGACGGGCTACCAGAACAACATCGGCCCCATAACCCCCACCACCCCCGTCACCCCCACTGTCCCTGAGTCCGACTCATgatcactctctcctcttcatgtTCCTGCCCCTAAACCCCTAACGATCACCCTCCTACAGGCCAACTCACATTTAACCCTACAGAGTCTCACCACCAGAGGGACCTGCAGCGCTGCCCAAAACACCTCCACCCTCACGCTATGAGTGACCCTAGTCACAggacacccctctccccctctccaacaGACCCAGATGTTAGAGTTTACCGCAGCAGGGGCTGCTTTGACAAGGAACCACATGGTCAGGTGTCTGAGATATTACAGGTGTGTATCTATCCCTAATGGAGTGTATTCAGTGCTGGACACGCAGTATGTTCTGGTCTAGAGGCCAGGCAACAGTATTcttattctgctctgctctgcttatTGCAGACACAGTTTAGGGGAATGTAGAGAAAATCATATTTACGTTGGCATTAAGTGAAACTGAATGTGAGtatctatacagtgcattcggaaagaattcagactttttccacattttaagttacagccttattcaaaggTCCTCATCACTctatgcacaataccccataatgaca

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983641.1 True 1551 mRNA 0.51 2 58843679 58845368
Loading

Neighbor

gene id symbol gene type direction distance location
sfrs3 sfrs3 coding downstream 130049 58707572 ~ 58713630 (-)
LOC110528083 LOC106583085 coding downstream 147823 58691817 ~ 58695856 (-)
LOC110528082 LOC106583086 coding downstream 155885 58681731 ~ 58687794 (-)
ccnd3 LOC106583090 coding downstream 181468 58655809 ~ 58662211 (-)
LOC110528080 NA coding downstream 214416 58627335 ~ 58629263 (-)
LOC110528983 LOC106565665 coding upstream 1099 58846467 ~ 58868216 (-)
LOC110528090 LOC106583075 coding upstream 44633 58890001 ~ 58895798 (-)
LOC110528094 LOC106583073 coding upstream 103088 58948456 ~ 58970820 (-)
eps8l3a LOC106583072 coding upstream 177326 59022694 ~ 59037726 (-)
LOC110528098 LOC106583071 coding upstream 197903 59043271 ~ 59047897 (-)
G629124 NA non-coding downstream 19831 58821468 ~ 58823848 (-)
G629117 strip1 non-coding downstream 27614 58812794 ~ 58816065 (-)
G629001 NA non-coding downstream 202207 58640672 ~ 58641472 (-)
G628997 NA non-coding downstream 223045 58620334 ~ 58620634 (-)
G629152 NA non-coding upstream 62866 58908234 ~ 58908581 (-)
G629185 NA non-coding upstream 78982 58924350 ~ 58924635 (-)
G629187 gnai3 non-coding upstream 80590 58925958 ~ 58932436 (-)
G629190 NA non-coding upstream 89750 58935118 ~ 58935510 (-)
LOC110528069 LOC106583062 other downstream 414308 58425680 ~ 58437154 (-)
G628714 NA other downstream 725557 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 970348 57872050 ~ 57873331 (-)
G630132 NA other upstream 902082 59747450 ~ 59752591 (-)
G630227 NA other upstream 1070611 59915979 ~ 59917551 (-)
G630747 NA other upstream 1237678 60083046 ~ 60083857 (-)
LOC110528989 LOC106583145 other upstream 1893127 60699279 ~ 60822525 (-)
G631740 NA other upstream 2345340 61190708 ~ 61191045 (-)

Expression

LOC118965303(LOC106565665) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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LOC118965303(LOC106565665) Expression in each Bioproject

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LOC118965303(LOC106565665) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2.
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Co-expression Network