LOC110528983 (LOC106565665)


Basic Information

Item Value
gene id LOC110528983
gene name LOC106565665
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58846467 ~ 58868216 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110528983
ttggatcgctgccgtcttcaacacgcagcagtccagcctttcgaaacccgttgatgatagttgattttttgacaatgctccacgctgtcagcAGCTCTATTTCCCTTTCCAACAGCCAcatcgatcgccttcaacttgaaagctgcatcatatgcattcCTTCGTGTCTTTGTCATGATGAGGTTGACAAAATGACTACCGTTATAAGAACGATGGGAAGTTTGAGCGTGttcgatttacgtcacattatgtgacggtgctcagttttttggcgcatgaatcttgtgaaagcgggaaaaatccataaattagccgcgtcattgtttaaaccgcgaggttcaacgcgtgggaaaaaagtagcggcttatagtccggaaattacgGTGCCTACCTCGTCCCATacttcatcctcctcatcctcatcggCATCCCGCTCttcttcctggagctggctgTGGGCCAGAAGATCCGACGTGGGAGCATGTGTGCCCCCGCCTGGGCGGGATAGGGGTGTCCAGTCTAATGTCGTGGATCCTGAGTGTGAGAAAAGCTCGGCCACCACCTACTTCTGGTACCGCCAGACCCTGAACACTACCAGCACCATCGCAGACAGCGGCGGCCTGAACGTCAAGATGACCCTGTCTCTGCTGGTGGCCTGGATCATCGTCTGTCTGGCTGTCATCAGAGGTATCGCATCCTCCGGAAAGGTGATGTATTTCAGCTCTCTGTTCCCCTACGTGGTGCTCTTCTGTTTCCTGGTGAGAGGTTTACTGTTTAAGGGTGACGTCGATGGCATTGCACACATGTTCACTCCCAAGCTGGAGAAGATGCTGGAGCCCCAGGTGTGGAGGGAGGCAGCCACAAAGGTGTTTTTTGCCCTTGGCCTGCTTTGGTGGAGTCATCACCTTCTCCAGCTACAACAAGATAGACAACAACTGCCACTTTGACGCCATGCTCGTCTCCTTTATAAACTTTGTCACCTCCATCCTGGCTACTCTGGTGGTGTTCGCCGTGCTGGGCTTCAAGGCAAACCTTATGAATGAGAAGTGTGTCATAGTAAATGCAGAGAAGATCATTGGCTGCCTGAACTCTAACGTGCTGAGTCATTACCTCATTCCGCCACACGTGAACTTCTCCCAGCTGTCCACCGTAGAGTACACTGAGATGTACGGTGTCATCAAGACGGTGAAGGAGGGCAGCTTCGCTAAACTGGGCCTGGACCCTTGTGTTCTGGAGGATGAGCTCAACAAGtcagTGCAGGGTACAGGCTTGGCCTTCATTGCCTTCACAGAGGCCATGACTCACTTCCCGGCCTCTCCCTTCTGGTCCGTCATGTTCTCCTTCATGCTCATCAACCTGGGCCTGGGCAGTATGATCGGCACCATGACAGGCATCACCACGTCCTCGACACCTACAAGATCCAGAAGGAGCTCTTCACAGTGTGCTGCTGTAATCATAGCCTTTATCTGTGGCCTGCTCTTCGTCCAGCGCTCTGGGAACTACTTTGTCATCATGTTTGATAACTATTCTGCTGGTCTGCCACTCACTGTCGCGGTCATCCTAGAGAATGTGTCAGTGGCCTGGATCTACGGCACCAAGAGGTTTATGCAGGACCTTGAGGATATGTTGGGTTTCCGGCCCCATGCCTTCTATTTCTACATGTGGAAGTACGTCTCCCGTTGTCTCATCGTTCTCATTATGGCTACTGTCATTGAGATGGCCATCAGCCCGCCAGGGTACAATGCATGGGTGGAGGAACTGGCTCAGGAGCGTTTCCAGAGCTACCCTCCCTGGGCATTGGCCATGTGCTTCTCCCTCATCGTGATGGCCATGCTTCCTCTCCCCATCGTCTTCATCGCCCGCCACTTCAACCTGATGTCTGATGGCTCCAACAAGTTGTCCGTCTCCTACCGCAAGGGCATGATGAAGGACATCTCCAACCTGGAGAAGGTGGACGAGATGCACTTCATCCTGGGCAAGAACCCAAGAGAGACACCTTTGCCCAAGCCCCCGTCCCAAGCCAACCTAGTCCCCCCAGGCACCAAACCCCTGGAGAACTCCAACTCCTCGTCCGCCAACAGCTGCTACCGGACGGGCTACCAGAACAACATCGGCCCCATAACCCCCACCACCCCCGTCACCCCCACTGTCCCTGAGTCCGACTCATGATCACTCCTCTTCATGTTCCTGCCCCTAAACCCCTAACGATCACCCTCCTACAGGCCAACTCACATTTAACCCTACAGAGTCTCACCACCAGAGGGACCTGCAGCGCTGCCCAAAACACCTCCACCCTCACGCTATGAGTGACCCTAGTCACAagacacccctctccccctctccaacaGACCCAGATGTTAGAGTTTACCGCAGCAGGGGCTGCTTTGACAAGGAACCACATGGTCAGGTGTCTGAGATATTACAGGTGTGTATCTATCCCTAATGGAGTGTATTCAGTGCTGGACACGCAGTCTGTTCTGGTCTAGAGGCCAGGCAACAGTATTcttattctgctctgctctgcttatTGCAGACACAGTTTAGGGGAATGTAGAGAAAATCATATTTACGTTGGCATTAAGTGAAACTGAATGTGAGtatctatacagtgcattcggaaagaattcagactttttccacattttaagttacagccttattcaaaggTCCTCATCACTctatgcacaataccccataatgacaaagcgaaaaactgttttttataaaTGTCTGGAAAtggtattaaaaatacaaaaaacagaccctttgctatgagactcaaaattgagctctggtgcatccaaGAAAGACTAGTATTTATAGGCACAAATTGGAATGTATTACAGCAGATGTGATGATTAAGGAGCTTTGACCAAATCTGATCGAAGTCTGACTGTAAAGCAATCTCCATTTTACTGAGGAATATAAACCTTCCAATGGTTGATCCTCAAATCTCTGTTTACTGATACTCATGAGCAGAATGGCAGTGCTTCATGCTTAGTATGTAAGTGTGTCTTCATTTAAACCAAGAGCACAGTTCTCCGTTGGACAATTTCAACCCTCTTACAGAAGTGAAGTATTAAAACCAGATAGAGAACTCACAAAAGCACACAGTGTTAGTTTAATATCTGCCAAGACCTTTTCCCACAAGTATTTACACAGTTTCATCACACAGATTGCAAAGCTTTTACCATTCGTTCTTgccataacaaacaaaaaaaaagtacatttgacaatctgaaatggcagggaaggaaggaaatgccccccccccccccaaaaaaaaaaaatgtgacccACTTTCATAAAGTAAAATGCCTACTTGGCCTGTCACTCTTATCGTCGTTTGAATTACAAATAGCTGTGAAGTCAATGATTCCATTTTAGAGAGCTTTCTTTTATGAAGAGGATtgctttatttgtatttttgtcaCAATGTTCAAAGCCATGGTGTTGATGATTAAATTGACTACATTTATATTACTGCATAATATTCTATCTGTGTATGTTGGTGCGCATAATGTTTAATACTAATTAAGATTTTATCTGCAAACGTGACCGGGTGTACTTTTTCATCCTGTGTATATTTGAAGTTTCTCTATTTTGTAGTTGGTATACCTTATCTATGGGAGTGTAAAAGGAGTGCGACGAGGGGGTGGGTACAGTATGTTAACCTTGTGTGATCCTAATGTAGCCTCGTTTTGAGAACGTGTATTGTCGAACTCTGACGAGCTACATGTGCAGCACTCTGGTTCTCATGTGTTCCTCTCTCAGCTGCTTGTAGAGAGGCGTGGCCCTCCAGACAAGAACACATGGATAAGCATATCTATGCAGTAGGTTAATATACAACCAGTCTTTGCTTGAAGTTCTAGTCAAGCTTTATTTGAGTCAAAATCCCTCACTTTAAACGTCTGTAAATATTCTTACGTCTGTAAGATTCTACACCCGATAATAATCCAATTATTCGAAAGATAGAGCAAAACTTGTGAAGTATATAAATGTCTTAACACTGAACTGTTTCGATGAGAGTTAATGTGGAGGAAATGACTATTGGATGTGGTGAATATGAATGCACTTTTTCACTTGAATCTCAAGAGTAttgttatgtttttgttttctgcaTGATGGTATGCTCAGTGTTTGCCCTAGCGTGGGTACAGTCTTTGTTAAAGCATTGTACTATTCATTATATTATCTGCTGCAGTAACAGCAACGGGATTGGAGGCTAAAACCTCTGTAGGGAAAATGACTTGTTAGGAACTGCCCCTTTGTAGCTAAAGTGTTAGTGACTCTCAACataatgtgagtgtgtgagtgtgggtaTGTGTATTTGTGTCTATGAATGTGTGTTAGTGAGTTTCCTTCTTATAAGTGGGTGCAGGGACTTACCAAGCACAAGTTGAACATTGAATCGGAGGCCCAACCAAAACCAACTCTCTCTTCCATCATGACGATTGTACGTTATTGAAACTACACGTGACAAGAGTAACATTGTTTTTTTGGGATATCACCAAAAATATCAATAAACCATAAAGAACATGTCAAGTGATTTGTATTGAACTTTTAGGACAAGCTAGATGTGTAGATAAGATACTTGTAGTTTGGATGGCCTGAACCACTGCCGTTCTCTTTACAATTGGAACATAAGGTCCCCTAGCATTGTGCAAACTTAATCATTTGGCACTCAACATATCCCATATTGGGACATAACCATGTTCCCAGCAGAACACAATCACACGTCCTCACTCTCATTAAgtaatatatactgtacacagaGGAAAGTATTGTCATGGTTCACAAGGATCATAATTAATTCACATTTCAATGCAATGTAAATACGCCCTTTGTACATATTTGTGAAGCAATCCCTTGGAGGCCAACAGATGACAAATATCTGTACACAGCTGTTATTCTGGAAGAGGAAATGGTGCTGTCCTCCCTCATAATGGATGTTTTGGCAAAGAACTAAAGGGCTTCTCAGAACCCAATGTACAACCCTTCAACAAGAGGACACAGCTGTGAACACAGGCTTAACCCATCAGAACACAGGCTTAACCCATCAGAACACAGGCAGTAGACATTTTTATTTCGGATgattattacagacagacattgTGGTGATGTTACGCTCTCACCCAACTGTGACATATAATTAGAAAATTACTTAACAGAAACGTAGAAACTATAGAATATACAGTAACTATAATTGCAATGTTTTAATTTGTAGTGTTAATATTGTTAGAGGTTGTAATGTTTTTATATCAAAGATAATGCATTTCATCTGTGTTTCAATTTCCCCTGATAAATTATCCATTTTGTTTCAAATATCAATGTGATTTCACGCTCTCACCTAAACAAATCATGAATAAGAATTAACCAGGCAAGTATTGATCAAATGACAGAAATAGCATTGTTTCAACTCATTGTTTCACATATAGAAAAGTACATGTCTAAATCAATGCTCAATTAATGTAAAATGAATTAGTATAGCTATACTAAACCAAAATATTaacacatgcaacaatttcaacgattttactctTACAGTAAATCAGTCActtgaaataaatacattaggccctaatctatggatttcacatgactgggcaggggcaaagccatgggtgggcctggcagggcataggcccacccatttggtaaccaggtccagccaatcagaatattgTTTAGTCTCAGAATAtcgtctcagacgatcccgcaggtgaagaagccaatgttgaggtcctgggctggcgtggttattcCTGCAGTGGACATTccggcagtcagcatgccaatttaatgctccctcaaaacagctgtggcattgtgttgtgtgacaaaactgcacattttagagtgcccaATTATTGTCCCTAACtcatgtaatgatcatgctgtttaatcagtttcttgatatgccacacctgtcaggtgaatggattatcttggcaaaggagaaatgctcactacacGGACAAactgtgaacaaatttgtttacaaaaTTTGAGAGGAAGAAGCTTTTTGTGCtcatggaaaatgtctgggctctttcatttcagctcatgaaacatgggaccaacacttcatatgttgtgtttatatttttgttcagtgtaaattacTTGACTGAAACTTGAATATGATTAAAAACTCTACATGTCAGCAAAAgtattgtatttggttcaaaacatTCTCTAAGACCTAAACCTCAAATGGAGTTGTGCATAAAGGGTGTGaccattgagcaagttgaggaagctGAACTCCTAGGTAACATTCAATGGTCaattatcatggtcaagtcatTTTGACAAAGTGAAGATGGGGAGGGTTATGTCTGGTATAAAAGTTGCATAATCAGATAAGatacagctcagacacccatacataccccacaagccatgccaccaggggtctcttcacagtccccatgtCCAAAACAATTCACGGAAatgcacagtattatacagagctatgatcgcatggaactcccgtccatctccaattactcaagcaaacagcaaaattacATAAAACAAATGGATAAAACAACATCTCATGGCACAATAGGGACTGTGAaatgacacacatacaaacaaacacatgcCCACACACTCTATCACACTCTAACACAAACAATCTATACACACATTATTCTTTAGTTGTGTTGTTTGTACAATGAGTGTAGAGAACATTAAGAACCCCTGGTCTTTCCAtgaccaggtgaatacaggtgatagctatgatcacttattgatgtaatttgttaaatccactttaagcAGTGTATATAAGGTtagagaaggatttttaagccttgagataattgagacatggattgtgtatgtgtgccattcagagggtgaatgggcaagacaaaaaatgtaagtgtctttgaatgggtatggtagtaggtgccaggggcagcggtttgtgtcaagaactgcaacgctgctgggttttttacaCTCAGTTTCTCAACTGTGAattaacagtttcccgtgtgtat

Function

NR:

description
PREDICTED: sodium-dependent neutral amino acid transporter SLC6A17-like isoform X1

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110528983 True 7013 mRNA 0.43 10 58846467 58868216

Neighbor

gene id symbol gene type direction distance location
LOC118965303 LOC106565665 coding downstream 1099 58843679 ~ 58845368 (-)
sfrs3 sfrs3 coding downstream 132837 58707572 ~ 58713630 (-)
LOC110528083 LOC106583085 coding downstream 150611 58691817 ~ 58695856 (-)
LOC110528082 LOC106583086 coding downstream 158673 58681731 ~ 58687794 (-)
ccnd3 LOC106583090 coding downstream 184256 58655809 ~ 58662211 (-)
LOC110528090 LOC106583075 coding upstream 21785 58890001 ~ 58895798 (-)
LOC110528094 LOC106583073 coding upstream 80240 58948456 ~ 58970820 (-)
eps8l3a LOC106583072 coding upstream 154478 59022694 ~ 59037726 (-)
LOC110528098 LOC106583071 coding upstream 175055 59043271 ~ 59047897 (-)
LOC110528100 mep50 coding upstream 216886 59085102 ~ 59094461 (-)
G629124 NA non-coding downstream 22619 58821468 ~ 58823848 (-)
G629117 strip1 non-coding downstream 30402 58812794 ~ 58816065 (-)
G629001 NA non-coding downstream 204995 58640672 ~ 58641472 (-)
G628997 NA non-coding downstream 225833 58620334 ~ 58620634 (-)
G629152 NA non-coding upstream 40018 58908234 ~ 58908581 (-)
G629185 NA non-coding upstream 56134 58924350 ~ 58924635 (-)
G629187 gnai3 non-coding upstream 57742 58925958 ~ 58932436 (-)
G629190 NA non-coding upstream 66902 58935118 ~ 58935510 (-)
LOC110528069 LOC106583062 other downstream 417096 58425680 ~ 58437154 (-)
G628714 NA other downstream 728345 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 973136 57872050 ~ 57873331 (-)
G630132 NA other upstream 879234 59747450 ~ 59752591 (-)
G630227 NA other upstream 1047763 59915979 ~ 59917551 (-)
G630747 NA other upstream 1214830 60083046 ~ 60083857 (-)
LOC110528989 LOC106583145 other upstream 1870279 60699279 ~ 60822525 (-)
G631740 NA other upstream 2322492 61190708 ~ 61191045 (-)

Expression


Co-expression Network