LOC110528091 (LOC106583076)


Basic Information

Item Value
gene id LOC110528091
gene name LOC106583076
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58878933 ~ 58889711 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983642.1
AGCTTTTCTATGAATCCTCCAGGAAGCATTTTGCAGCAGGTTGTACTCCATCATGCACTGTAGTAAATGCACATTAACACCCCATACTAGTGTATTATGACCTCCCTTTATGTTCCACATGAAAGGAGTGAACAGGGATTATTCACATGTTTGAGTGTCACAGGGGCTTTGGAAAGAACAACACTTCAAGCTGGAAATGGAGGAAAGAAGGATAGGCTGAAAAAGTGGAAGAGTCAGAACTGTAAAACTGTACAATGTGCAGAGTTTTACCTGAAGATGTTTTATGTCATTAACAAACATCTGGTTGATACCGTATTAAACAAGGAATTCATCTGACAAGGGATAAACACCTTGGATTCCTCTGATAAAGGGGAAGTCAGCCAGGCAGACTCTGGAGGAGAAGGGTCTGTATGAAGAGTACAAGAGGAAGTATCGCTACAACCCCAGAGCCAAGTTTAACAACAGGGCGGGTGGTGCCATGGTGCCCATGATCTACTATCCAGAGTCGACATACTACGGAGTCATCGCCATCGGTACTCCCCCTCAGTCGTTCAAGGTTCTCTTTGACACGGGATCTGCTGACCTGTGGGTGCCCTCTGTCCATTGCAGAAGCAGCAGCCAGGCCTGCAACAACCATGCCAGGTTCAACACTACAGCATCCTCCACATTCCAGCCCAGCTCAGAGACTTTCTCCATCCAATATGTCACTGGTTACATGACAGGGGATGTGGGATATGACACCGTAACATTCGGTGACTTGTATGTGACACACCAGATCTTTGGCCTGAGTCTGGTGGAGGATGCTTTCCTGGATAACTTACCATGGGATGGGATTCTGGGCCTGGCCTTCCCCAACCAGCAGTCAATTAACGGAGGTACTCCTGTATTTGACAACATTTGGAAACAAGGAAAGATCCCTCAAGACCTGTTCTCCATCTATCTGACCAGCTCTGTAGATGGCAGTATGTTAATCCTGGGAGGAACTGACCCCTCCTACTTCACAGGAAGCATCCAATGGATTCCCATCTCTCAACCTACTGGCTACTGGCAGATTAATGTAGACAGTATTACTATCAATGGGAATACTGTGGCGTGTGCAGCGGGCTGCCAAGCTGTAGTAGACTCTGGCACCACTGAGATCCTAGGGCCTACCAGGGACGTCAATAACATCAATGGCTGGGTGGGAGCCTACAGCGAAGAGGGTCTTGTGAGTTGCAGTAACATAAAGCGCATGCCTGAGATTATCTTCAACATCAATGGATTCGGCTTCACTCTCCCAGCATCAACCTATGTTTTCTCAtATGGCTCCAGCTGTACTACTGGTTTTGGCACCTGGGACAATGATCAGTGGATTCTGGGTGAGGTCTTCATGAGGCAGTTCTACACTGTCTTCAACAGAGAACAGAACTGGGTGGGCTTGGCCCAGGCTAAAAAGAGTCCAGAGTCAGACTGACACTGACAACCCTGCTGATGCCCTGACACCATACCCGTCTGCATCTCAGACTGAGAGAGATTTGCCAGCCCAACCATCTTCACTCCACTTCTGTTTACATCTGAAGTGAACAACAGACAGGGgtaatggaaaatgaaaaaatcTCCACTACTATGCAATTGTTCCAATTATGCAAATAAAACAAAGTTAACCTGTA
>XM_021609898.2
ACAGTGTATAAAAAGGCCAGGGTATAGCCAGTCCAATGTACTGTACTCCCAAGTAACTGATCAGACAAGATGAAGTTGGCTGTTGTGCTGTTTGCCTTAGTGACCCTTTCTGAGTGCCTTCTCAAGATTCCTCTGATAAAGGGGAAGTCAGCCAGGCAGACTCTGGAGGAGAAGGGTCTGTATGAAGAGTACAAGAGGAAGTATCGCTACAACCCCAGAGCCAAGTTTAACAACAGGGCGGGTGGTGCCATGGTGCCCATGATCTACTATCCAGAGTCGACATACTACGGAGTCATCGCCATCGGTACTCCCCCTCAGTCGTTCAAGGTTCTCTTTGACACGGGATCTGCTGACCTGTGGGTGCCCTCTGTCCATTGCAGAAGCAGCAGCCAGGCCTGCAACAACCATGCCAGGTTCAACACTACAGCATCCTCCACATTCCAGCCCAGCTCAGAGACTTTCTCCATCCAATATGTCACTGGTTACATGACAGGGGATGTGGGATATGACACCGTAACATTCGGTGACTTGTATGTGACACACCAGATCTTTGGCCTGAGTCTGGTGGAGGATGCTTTCCTGGATAACTTACCATGGGATGGGATTCTGGGCCTGGCCTTCCCCAACCAGCAGTCAATTAACGGAGGTACTCCTGTATTTGACAACATTTGGAAACAAGGAAAGATCCCTCAAGACCTGTTCTCCATCTATCTGACCAGCTCTGTAGATGGCAGTATGTTAATCCTGGGAGGAACTGACCCCTCCTACTTCACAGGAAGCATCCAATGGATTCCCATCTCTCAACCTACTGGCTACTGGCAGATTAATGTAGACAGTATTACTATCAATGGGAATACTGTGGCGTGTGCAGCGGGCTGCCAAGCTGTAGTAGACTCTGGCACCACTGAGATCCTAGGGCCTACCAGGGACGTCAATAACATCAATGGCTGGGTGGGAGCCTACAGCGAAGAGGGTCTTGTGAGTTGCAGTAACATAAAGCGCATGCCTGAGATTATCTTCAACATCAATGGATTCGGCTTCACTCTCCCAGCATCAACCTATGTTTTCTCAtATGGCTCCAGCTGTACTACTGGTTTTGGCACCTGGGACAATGATCAGTGGATTCTGGGTGAGGTCTTCATGAGGCAGTTCTACACTGTCTTCAACAGAGAACAGAACTGGGTGGGCTTGGCCCAGGCTAAAAAGAGTCCAGAGTCAGACTGACACTGACAACCCTGCTGATGCCCTGACACCATACCCGTCTGCATCTCAGACTGAGAGAGATTTGCCAGCCCAACCATCTTCACTCCACTTCTGTTTACATCTGAAGTGAACAACAGACAGGGgtaatggaaaatgaaaaaatcTCCACTACTATGCAATTGTTCCAATTATGCAAATAAAACAAAGTTAACCTGTA

Function

NR:

description
pepsin A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983642.1 False 1649 mRNA 0.47 9 58878933 58889711
XM_021609898.2 True 1420 mRNA 0.49 9 58884506 58889711

Neighbor

gene id symbol gene type direction distance location
LOC110528089 LOC106583079 coding upstream 37614 58835280 ~ 58841319 (+)
LOC110528088 LOC106583080 coding upstream 44630 58825054 ~ 58834303 (+)
LOC110528087 LOC106583081 coding upstream 62847 58804760 ~ 58816086 (+)
LOC110528086 LOC106583082 coding upstream 78811 58737859 ~ 58800122 (+)
LOC110528084 LOC106583083 coding upstream 141304 58728133 ~ 58737629 (+)
LOC110528092 LOC106583074 coding downstream 25471 58915182 ~ 58920830 (+)
LOC110528093 gnai3 coding downstream 36229 58925940 ~ 58932441 (+)
LOC110528095 LOC106565671 coding downstream 80015 58969726 ~ 59022859 (+)
LOC110528097 LOC106583070 coding downstream 145362 59035073 ~ 59042858 (+)
LOC110528099 LOC106583069 coding downstream 178926 59068637 ~ 59084729 (+)
G628478 NA non-coding upstream 26281 58843280 ~ 58852652 (+)
G628476 NA non-coding upstream 160285 58712897 ~ 58718648 (+)
G628458 NA non-coding upstream 255598 58622608 ~ 58623335 (+)
G628457 NA non-coding upstream 258707 58619967 ~ 58620226 (+)
G628451 NA non-coding upstream 268565 58610111 ~ 58610368 (+)
G628566 NA non-coding downstream 1417 58891128 ~ 58894932 (+)
G628572 NA non-coding downstream 16716 58906427 ~ 58906692 (+)
G629165 NA non-coding downstream 32525 58922236 ~ 58922541 (+)
G629170 NA non-coding downstream 43016 58932727 ~ 58933102 (+)
G628468 LOC106583084 other upstream 165349 58708295 ~ 58713584 (+)
LOC110528980 LOC106583093 other upstream 374856 58502198 ~ 58589001 (+)
LOC110528055 LOC106583107 other upstream 887061 57917801 ~ 58055214 (+)
G627035 NA other upstream 1282882 57542882 ~ 57596051 (+)
snrpe ruxe other upstream 1555912 57319669 ~ 57323047 (+)
G629678 NA other downstream 794620 59684331 ~ 59684763 (+)
G629679 NA other downstream 795161 59684872 ~ 59685187 (+)
LOC110528122 LOC106583221 other downstream 816242 59705922 ~ 59712261 (+)

Expression


Co-expression Network