LOC110528092 (LOC106583074)


Basic Information

Item Value
gene id LOC110528092
gene name LOC106583074
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58915182 ~ 58920830 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609899.2
actgtgtgtgagtgttgaagacagagggagagagtgagcctgtgtgtgtgtatgtgtgcatgcgcgGTTTACATCAGCAAGAGGAGGGAGACACCATTTACtctgtctctttttttctctttcatCTCCATAAATCTATCACTCTGAAAACAGATACAGCCATCCAGAAAATAACAGAAGGAAGAGGCAAAGGCAGAGGAGGGGAAGTGGAGCATTCTGATAAAGAAGGGGAGTGCCTCAACATCAGTCAGCATCATACACAATACATGCTGCTGACTGATGTCTACCATGCAACCCAGAACTGGGAACTAACCAGCCAGCTTTACATTCTCAAAAGCAGGACAGACAGCAGGCTACAGCATCACAAAACCTGCCCAAAACCAGGAAAAGGCCTGCATTGCTGAGGAGGTTGAGGGGAGTTGACTTTTCAAAGGGTGACGCAGGATCTCACCCCCtgtctatagagctgctgctgtCTGACCTCCTCCCAGACTGGGCCTCTGGTTCCTGGCCCCGCCCCAGGCTGTGAAGGATGGGTGATGGGCCTGTGATTGACACCTCCCGCCCGCCTTGTCCCGCCATTCGATGGAGCCATTGTGgaactcctccctccccttcccactGTCCATGCCCAACACCTCGTCCTCTGAGTCACCCGAGAGCGGAGCTCTGTCCCAGTCAATAGCGCTACTCGCCATGCTGCTCATGGACCTGCTGGCCGTGGTGGGCAACGGGGCCATAATGGCTGTCATCGCCAAGGCCCCACAGCTACGTAAGTTTGCCTTTGTCTTCCACCTGTGCCTGGTGGACCTGCTGGCGGCCCTGGTTCTGATGCCCCTGGGCATGCTCTCAGGCCGGGCCTTCTTTGGCGAGGCCCTGTGTCGGAGCTACCTCTTCCTCAGCGTGTGCCTGGTCAGCGCCGCCATCCTCTCCATCTCAGCCATCAACGTGGAGCGCTACTACTACATCATCCACCCCATGCGCTACGAGGTGAAGATGACCCTGGGCCTGGTGGCCTCAGTGCTGGTGGGGATATGGGTCAAAGCTTTGTCCATGTCCGTCCTGCCGCTGCTGGCCTGGGCCTTACAGGGCGAAAGGACTCCTCTTCTGGAGGGTGCTGGAGTtgggggagggggtggaggtgTACCCTCACCCTCTGCTGCTCAGGGTCACAGGCGATGCTCCTTGCACTGGACAGGGGGCGGGTCAAACCGTGTTGCCTTCATGGTCCTGTTCACGCTGGTGTACTTCCTGTGTCCACTGATGGTCATCCTGGTAGTGTACTGCAGCATGTTCAAGGTGGCGCGAGTGGCAGCCATGCACCATGGGCCCCTGCCGACCTGGATGGACACGCCACGCCGGCATCGCTCTGAGTCGCTCAGCAGCCGCTCCACCATGGTGACCAGCTCGGGGACAGGGGCGGGGCACGACACTCCTCACCGCGCCTTCGGAGGGGGTAAGGCGGCAGCGGTGTTAGCAGCAGTGGGAGGACAATTCCTGTGCTGTTGGCTGCCCTACTTCTCCTTTCACCTGTACTCAGCTCTGGCCTCTAGCCCTCCAGCCACGCTGGTCCCCCTGGAGGAGGTCGTCACCTGGATCGGCTACTTTTGCTTCACCTCCAACCCCTTCTTCTACGGCTGTCTGAACCGACAGATCCGCGAGGAGCTGGGCAAGCATGTGCCTTGCCTGTTTCGCCAGGCAACGGGAGAGGAGGACCGACTGCCCAGCCGTGAGGGATCCATACAGGAGAATTTCCTGCAGTTTCTCCAGGGCACTGGCTGCAACCTGGATCCCCAGGACTCCCACAGCACCTCCAGCCCCAAGGGAGAGGCCTGCCGGCCCCTGGTCCAGCCCCCACAGCCTATACCCATTGACTTCCGCATCCCAGGACAGATTGCAGAGGAGACCTCAGAGTTCCTTGAGCATCACCAGATTAAAAACAACCATATCATATCGGACAGTTAGGTTATGGATTTATTTTATGTAAAAAATCAACACAAAAAGTTACCAGGATAACAATTACCACAGTAACATAACCACACTGGTATACAGTACGTCACGGAGTATTAACATAAAGCATTTTATTCTTAACAATCAAAAGCTGTGCAATGGGAATCGCATTTTGCAGCTTCACTTTCCATTCTGTAAAGGCTGCAATGCTATGGAATTTATATTATTTGTATCATGTTCCTATTAGAGTATACAACAAATAATTTGCTGTGGATTGTGGCATTTTGGGGAGAAAGACAAATGGCACAACTGTAGCTGCAGTGTATCTGACAGGTTAATATGGTCAGTGATGCCGATATTGGGGTTGTTTGTGAGGGAATTCGTTTTAGAGATTTAATTCTTTACTTTTTTTTACTTCACAATGCATTGATAGTGTCAGTATGTTATTAATACAGATGTATTATATATTCTGAGATGTTCCTTTTTTGGATTTCAAACCAAACAAGCCCTTGAGCAAAGGGGATGTTAGAGTCTGTCAGCCGTCTTTCTTTCGTTAAGCCTACTTTAAACTATATCAGGTTTTATGACTTTCAGAAGTCATCGTTGAGCCAAACACTTGTCCAATATCTGATACTGGTAGATCAATTACTTTTGAAGAATTGATGTATGgcagcttatttacataagctgTTGAATATAGAAACCAATATTGGAGTGCAGGAAGACATGCCTGAAAATATATAAGTATTCCTGACCCCTTCACCTCTGTAAAATATAATTAAACGGATGCATAGTAGACAGTGAGCGAATGGTCACAATATAACTACGATAAAGATACTGAAAGTTGGGACTTTTAGAGATGATGAATGAGCTACAGTACTTTAATTGTGCCCTGGTTGTGAGGTTGAGGCACGGAGGAAGTAAGAAGCGCCTGTTGTTGATAGGTAAACCTCTGGGCAGATACACCCTCTCTCTGGTGCTTTTCCTGAACACATCATCTGTGTTTTCCCATAAGCAGGCCAGGTTTATTGTGACCACAGTGAGGATGTAGGCAATCTTTTCCTTACTAATCCTGAACTACTTCTGGCCTGTCAGAAAAGTACATTTATTTTCATCTATCTACCGTTTAGATAGTACAGTGCCCCTCAAATTGACATGGGCAGGTGTTCAATACATTGGCAGATGTTCAGTTAATTAAAGGCAGGAGTATTTTTGTTAATTGATGCAATTGATACATTACATTTCTATACAATTAGATTTTTACATTTGCTGTTTTACAAATGTAGCTGTGTTTTATGTTAGATAAAACCTGACAGATTATTAGGTATTATTGATTACTGTATATTTTGTGATTAATTAACAAAATACAATGGTGTTTTCAAATGGAATACAGTAACTGTCTTTTCAATGTGTGTTGATTAGCTGTGGAGCAGCGGGTTGGAGAATGTAATAAACCAATTATATTTTACAGTGCAGCTCCTCAGAGTTCTCTACCTCAGATACAATATTGACTTAATTTGCAGGTCCAGCACACAATGTACACATAGAAAATATATGGTGTAAGTCATGCCACATATTTTTAACTCTATGCTCCCTGGGTTGCTTTCCTTCTGCAGCTGGACAAGGACAGACTGACAAAAGCTGTCCTCGGGGCTTTGTCTGAGAGACTTGATACAACGCCTTCACGTCTGCTATCTCTGGTGTCACATTGTGAGGGGATTTAGAATGGTTTGAGCTGTCCAAAACAGTACTGGCCAATTTGAGGTATCAGCCTTGTTAAAACATATATGGTTTATGCAAGAGTACAGAATAAAAGTTATTTATTTAGTTTCTGGCTTCTTAATTGTTTATTGATTGGTTTAACaaatatgaatgaatgaatgaaatgttatttttgtGTCAAATTTGCCAATTGGCAAGCCATCCCTTATGGAATTAATTGACACAtgaacaaacattacaataattcactatGCTAATTAAATGATAATTCTTCTTCCGATGTTCTCTGCATTGTGCATCGCATGAAGTGTGAAAAAAATGTAAGCTAAAAATCAATACATAATAGTAAATAAGGTTATCCAAACAATTgccattcaaaggtttggggtcacttagaaatgtccttgtttttgaaagaaaaa
>TU715385
AGATGTTCCTTTTTTGGATTTCAAACCAAACAAGCCCTTGAGCAAAGGGGATGTTAGAGTCTGTCAGCCGTCTTTCTTTCGTTAAGCCTACTTTAAACTATATCAGGTTTTATGACTTTCAGAAGTCATCGTTGAGCCAAACACTTGTCCAATATCTGATACTGGTAGATCAATTACTTTTGAAGAATTGATGTATGgcagcttatttacataagctgTTGAATATAGAAACCAATATTGGAGTGCAGGAAGACATGCCTGAAAATATATAAGTATTCCTGACCCCTTCACCTCTGTAAAATATAATTAAACGGATGCATAGTAGACAGTGAGCGAATGGTCACAATATAACTACGATAAAGATACTGAAAGTTGGGACTTTTAGAGATGATGAATGAGCTACAGTACTTTAATTGTGCCCTGGTTGTGAGGTTGAGGCACGGAGGAAGTAAGAAGCGCCTGTTGTTGATAGGTAAACCTCTGGGCAGATACACCCTCTCTCTGGTGCTTTTCCTGAACACATCATCTGTGTTTTCCCATAAGCAGGCCAGGTTTATTGTGACCACAGTGAGGATGTAGGCAATCTTTTCCTTACTAATCCTGAACTACTTCTGGCCTGTCAGAAAAGTACATTTATTTTCATCTATCTACCGTTTAGATAGTACAGTGCCCCTCAAATTGACATGGGCAGGTGTTCAATACATTGGCAGATGTTCAGTTAATTAAAGGCAGGAGTATTTTTGTTAATTGATGCAATTGATACATTACATTTCTATACAATTAGATTTTTACATTTGCTGTTTTACAAATGTAGCTGTGTTTTATGTTAGATAAAACCTGACAGATTATTAGGTATTATTGATTACTGTATATTTTGTGATTAATTAACAAAATACAATGGTGTTTTCAAATGGAATACAGTAACTGTCTTTTCAATGTGTGTTGATTAGCTGTGGAGCAGCGGGTTGGAGAATGTAATAAACCAATTATATTTTACAGTGCAGCTCCTCAGAGTTCTCTACCTCAGATACAATATTGACTTAATTTGCAGGTCCAGCACACAATGTACACATAGAAAATATATGGTGTAAGTCATGCCACATATTTTTAACTCTATGCTCCCTGGGTTGCTTTCCTTCTGCAGCTGGACAAGGACAGACTGACAAAAGCTGTCCTCGGGGCTTTGTCTGAGAGACTTGATACAACGCCTTCACGTCTGCTATCTCTGGTGTCACATTGTGAGGGGATTTAGAATGGTTTGAGCTGTCCAAAACAGTACTGGCCAATTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609899.2 False 4094 mRNA 0.46 2 58915182 58920830
TU715385 True 1291 lncRNA 0.38 1 58919159 58920449

Neighbor

gene id symbol gene type direction distance location
LOC110528091 LOC106583076 coding upstream 25471 58878933 ~ 58889711 (+)
LOC110528089 LOC106583079 coding upstream 73863 58835280 ~ 58841319 (+)
LOC110528088 LOC106583080 coding upstream 80879 58825054 ~ 58834303 (+)
LOC110528087 LOC106583081 coding upstream 99096 58804760 ~ 58816086 (+)
LOC110528086 LOC106583082 coding upstream 115060 58737859 ~ 58800122 (+)
LOC110528093 gnai3 coding downstream 5110 58925940 ~ 58932441 (+)
LOC110528095 LOC106565671 coding downstream 48896 58969726 ~ 59022859 (+)
LOC110528097 LOC106583070 coding downstream 114243 59035073 ~ 59042858 (+)
LOC110528099 LOC106583069 coding downstream 147807 59068637 ~ 59084729 (+)
LOC110528104 LOC106565516 coding downstream 348832 59269662 ~ 59293823 (+)
G628572 NA non-coding upstream 8490 58906427 ~ 58906692 (+)
G628566 NA non-coding upstream 20250 58891128 ~ 58894932 (+)
G628478 NA non-coding upstream 62530 58843280 ~ 58852652 (+)
G628476 NA non-coding upstream 196534 58712897 ~ 58718648 (+)
G628458 NA non-coding upstream 291847 58622608 ~ 58623335 (+)
G629165 NA non-coding downstream 1406 58922236 ~ 58922541 (+)
G629170 NA non-coding downstream 11897 58932727 ~ 58933102 (+)
G629171 NA non-coding downstream 13114 58933944 ~ 58934154 (+)
G629174 NA non-coding downstream 17003 58937833 ~ 58938061 (+)
G629175 NA non-coding downstream 17633 58938463 ~ 58938711 (+)
G628468 LOC106583084 other upstream 201598 58708295 ~ 58713584 (+)
LOC110528980 LOC106583093 other upstream 411105 58502198 ~ 58589001 (+)
LOC110528055 LOC106583107 other upstream 923310 57917801 ~ 58055214 (+)
G627035 NA other upstream 1319131 57542882 ~ 57596051 (+)
snrpe ruxe other upstream 1592161 57319669 ~ 57323047 (+)
G629678 NA other downstream 763501 59684331 ~ 59684763 (+)
G629679 NA other downstream 764042 59684872 ~ 59685187 (+)
LOC110528122 LOC106583221 other downstream 785123 59705922 ~ 59712261 (+)

Expression


Co-expression Network