LOC110528094 (LOC106583073)


Basic Information

Item Value
gene id LOC110528094
gene name LOC106583073
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 58948456 ~ 58970820 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609901.2
CTGCGTGCCAGCATACATCTCCAGAGTCCTCTTCCTCCATCCACCAACCCCTGACTGAGGCCAGGACCCCTTGTTCCCAGCCCCCACCTCTGCCCTCCTTCTTGCCTGTCTCCCAGTGCACCCCTCAGACGGCGGGAGCGGACGGCCGCATTTCCGTACCACACAGGATCTTGTCTTGAAGGAGTGAGAAAGACCCAAAGTTCAAAATGGGAGCTGGAGGAAGTGTCGAAGACAAGGCATTAGCCGCAAAGTCCAAAGAGCTGGAAAAGCAGCTGGCGGAGGATGCAGACAAAGAATCCAAGACAGTCAAGCTTCTGCTGCTTGGTGCTGGTGAGTCTGGGAAGAGCACAATTGTCAAGCAGATGAAAATTCTCCATCAAGGTGGTTATACCAAAGAAGAACAATTGGAGTTCAGGGCGATCATCTATGGTAACATCTTGCAGTCTGCTCTGGCCATTATCAGAGGCATGGAGATGCTGTCAATTGACTTTGGATCACCAAAGGGATCTGAAGACGGGCAGAAGCTGTCCAACCTGTCAGACTCCATTGAAGAGGGCTCAATGCCCCCTGAGCTGGCTGATGTCATCAAGAGGCTCTGGAGTGACAGTGGTGTCCAGGCCTCCTTCGAGAGAGCAGCTGAGTACCAGCTCAACGACTCAGCTGGCTACTATCTTGGAGAATTGGACAGAATTACAAAGTCTGATTACCTGCCCAACGAGCAGGATGTGCTGCGTTCTCGAGTCAAGACCACCGGCATCATCGAGGAGCAGTTCTCCTGCAAAGAGCTGCACTTCAGGATGTTCGATGTGGGCGGCCAGCGGTCGGAGAGAAAGAAGTGGATCCATTGTTTTGAGGGTGTAACCTGCATCATCTTCTGCGGAGCCCTCAGTGCTTATGACATGGTGCTTGTAGAGGACGATGAAGTGAACCGTATGCATGAGTCTCTTCACCTGTTCAACAGTATCTGCAACCACAGGTTCTTCGCCACCACCTCCATCGTACTCTTCCTCAACAAGAAGGATCTTTTCGAGGAGAAAATCAAGAAGGTCCACCTAAGCATCTGCTTCCCCGACTACGATGGCCCCAACACGTATGATGATGCCAGCGACTACATCAAGAAGCAGTTTGAGGAGCTGAACATGAAGAAGGGTGTCAAAGAAATCTACTCTCACTTGACCTGCGCCACGGACACAAAGAATGTTGAGATTGTGTTCGGAGCCGTGACAGACATCATTATCAAAGAGAACCTAAAATCTTGCGGTCTGTTCTAAGCAGAAACACAAAAAAGATTTTATTTTCCCCCTCATCCCTTCACTTGGATTCATGTTGAAGTTGAGCGGTAGGAACAGAATGCACAACAGAAGGCTCTGTAATGGCATAAGACTCTTCAGACCCTTCAATTCTAGACTATCCCATCCCTTCCTTCCTAACTCCTGACACCCTAAATGATGAGTAATGAATGCAAACACTAGGGAACAGCACCCAATTTACTCCAAAGGGAGTTAACACACATCATATCCAACAAATCGAACAAAGATGGCAACATGTCCCTCCTGGAGACAATGTGGATGATGATGTCCTTCAGATGGAAATGAGGATGAGAAGTCAGAAGAACAGCAGAATTAACACTTGTTTGATGTAGGTACTTTGTTATTCTGAATTATTTCTGGTTCTTTATGATGGGTTTGTGTTGAGGAAAGTGTCCAAAGCTGCTCAGGACTCCTATTGATAAACTTAGGAAATAATATGTTTTGAGGTGAGCCATCTTACTCAACATGGTCAGAGTGAAGTCATTTCCAGTAACATTGCTCTTGCCCCATGATTTATAATGTTTTTATCTAGTTCTAAGTATCTCAAATTAGAACTCTGTTTGGATATGCCTACTGTTTTACACCAGATGTAACACAGCAAAAAAACATATTTAGCTAATTCCAATCAGTGAGTTCAAATAGCCAGGTCTAAACTGGAATTTAAGAAAAAGTACCCTCAAAACAAGTTAGCAAAGTATTTTGTAAATACAATAGTAGATTAGTGGGCCTTATATATTAATATTAAAATATGTATCAAAATGTTCAACATCAGTGACTAGTGATGTACATGTATATTTCATTTTGACTATTGACAATTGAACCTGTAACTCTGACCGGTCTTGCGAAAGATAAGACATTCAAAATAAAGATCGACATAGAA
>XM_036983651.1
GTGTCCTGTGCtggagaggcaggttgaggttgccagggTCAGAGTTGTACAGAAGGGTCCTATGCTATACCTGTGAAGAAAGTTGAGGATGGGCCAACGGTGAGCGATCCTAAGAGGCTCCCGGTGCTGGTGAGTCTGGGAAGAGCACAATTGTCAAGCAGATGAAAATTCTCCATCAAGGTGGTTATACCAAAGAAGAACAATTGGAGTTCAGGGCGATCATCTATGGTAACATCTTGCAGTCTGCTCTGGCCATTATCAGAGGCATGGAGATGCTGTCAATTGACTTTGGATCACCAAAGGGATCTGAAGACGGGCAGAAGCTGTCCAACCTGTCAGACTCCATTGAAGAGGGCTCAATGCCCCCTGAGCTGGCTGATGTCATCAAGAGGCTCTGGAGTGACAGTGGTGTCCAGGCCTCCTTCGAGAGAGCAGCTGAGTACCAGCTCAACGACTCAGCTGGCTACTATCTTGGAGAATTGGACAGAATTACAAAGTCTGATTACCTGCCCAACGAGCAGGATGTGCTGCGTTCTCGAGTCAAGACCACCGGCATCATCGAGGAGCAGTTCTCCTGCAAAGAGCTGCACTTCAGGATGTTCGATGTGGGCGGCCAGCGGTCGGAGAGAAAGAAGTGGATCCATTGTTTTGAGGGTGTAACCTGCATCATCTTCTGCGGAGCCCTCAGTGCTTATGACATGGTGCTTGTAGAGGACGATGAAGTGAACCGTATGCATGAGTCTCTTCACCTGTTCAACAGTATCTGCAACCACAGGTTCTTCGCCACCACCTCCATCGTACTCTTCCTCAACAAGAAGGATCTTTTCGAGGAGAAAATCAAGAAGGTCCACCTAAGCATCTGCTTCCCCGACTACGATGGCCCCAACACGTATGATGATGCCAGCGACTACATCAAGAAGCAGTTTGAGGAGCTGAACATGAAGAAGGGTGTCAAAGAAATCTACTCTCACTTGACCTGCGCCACGGACACAAAGAATGTTGAGATTGTGTTCGGAGCCGTGACAGACATCATTATCAAAGAGAACCTAAAATCTTGCGGTCTGTTCTAAGCAGAAACACAAAAAAGATTTTATTTTCCCCCTCATCCCTTCACTTGGATTCATGTTGAAGTTGAGCGGTAGGAACAGAATGCACAACAGAAGGCTCTGTAATGGCATAAGACTCTTCAGACCCTTCAATTCTAGACTATCCCATCCCTTCCTTCCTAACTCCTGACACCCTAAATGATGAGTAATGAATGCAAACACTAGGGAACAGCACCCAATTTACTCCAAAGGGAGTTAACACACATCATATCCAACAAATCGAACAAAGATGGCAACATGTCCCTCCTGGAGACAATGTGGATGATGATGTCCTTCAGATGGAAATGAGGATGAGAAGTCAGAAGAACAGCAGAATTAACACTTGTTTGATGTAGGTACTTTGTTATTCTGAATTATTTCTGGTTCTTTATGATGGGTTTGTGTTGAGGAAAGTGTCCAAAGCTGCTCAGGACTCCTATTGATAAACTTAGGAAATAATATGTTTTGAGGTGAGCCATCTTACTCAACATGGTCAGAGTGAAGTCATTTCCAGTAACATTGCTCTTGCCCCATGATTTATAATGTTTTTATCTAGTTCTAAGTATCTCAAATTAGAACTCTGTTTGGATATGCCTACTGTTTTACACCAGATGTAACACAGCAAAAAAACATATTTAGCTAATTCCAATCAGTGAGTTCAAATAGCCAGGTCTAAACTGGAATTTAAGAAAAAGTACCCTCAAAACAAGTTAGCAAAGTATTTTGTAAATACAATAGTAGATTAGTGGGCCTTATATATTAATATTAAAATATGTATCAAAATGTTCAACATCAGTGACTAGTGATGTACATGTATATTTCATTTTGACTATTGACAATTGAACCTGTAACTCTGACCGGTCTTGCGAAAGATAAGACATTCAAAATAAAGATCGACATAGAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0001580 detection of chemical stimulus involved in sensory perception of bitter taste biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609901.2 False 2190 mRNA 0.45 9 58948456 58964243
XM_036983651.1 True 1989 mRNA 0.44 9 58948456 58970820

Neighbor

gene id symbol gene type direction distance location
LOC110528090 LOC106583075 coding downstream 52658 58890001 ~ 58895798 (-)
LOC110528983 LOC106565665 coding downstream 80240 58846467 ~ 58868216 (-)
LOC118965303 LOC106565665 coding downstream 103088 58843679 ~ 58845368 (-)
sfrs3 sfrs3 coding downstream 234826 58707572 ~ 58713630 (-)
LOC110528083 LOC106583085 coding downstream 252600 58691817 ~ 58695856 (-)
eps8l3a LOC106583072 coding upstream 51874 59022694 ~ 59037726 (-)
LOC110528098 LOC106583071 coding upstream 72451 59043271 ~ 59047897 (-)
LOC110528100 mep50 coding upstream 114282 59085102 ~ 59094461 (-)
LOC110527129 LOC106583068 coding upstream 128455 59099275 ~ 59105032 (-)
LOC110528101 LOC106583060 coding upstream 145628 59116448 ~ 59128446 (-)
G629197 NA non-coding downstream 6292 58941944 ~ 58942164 (-)
G629193 NA non-coding downstream 9353 58938815 ~ 58939103 (-)
G629190 NA non-coding downstream 12946 58935118 ~ 58935510 (-)
G629187 gnai3 non-coding downstream 16020 58925958 ~ 58932436 (-)
G629185 NA non-coding downstream 23821 58924350 ~ 58924635 (-)
G629307 NA non-coding upstream 41762 59012582 ~ 59014673 (-)
G629313 NA non-coding upstream 78757 59049577 ~ 59049803 (-)
G629742 NA non-coding upstream 87873 59058693 ~ 59079816 (-)
G629777 NA non-coding upstream 134282 59105102 ~ 59105380 (-)
LOC110528069 LOC106583062 other downstream 519085 58425680 ~ 58437154 (-)
G628714 NA other downstream 830334 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 1075125 57872050 ~ 57873331 (-)
G630132 NA other upstream 776630 59747450 ~ 59752591 (-)
G630227 NA other upstream 945159 59915979 ~ 59917551 (-)
G630747 NA other upstream 1112226 60083046 ~ 60083857 (-)
LOC110528989 LOC106583145 other upstream 1767675 60699279 ~ 60822525 (-)
G631740 NA other upstream 2219888 61190708 ~ 61191045 (-)

Expression


Co-expression Network