LOC110528098 (LOC106583071)


Basic Information

Item Value
gene id LOC110528098
gene name LOC106583071
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 59043271 ~ 59047897 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983650.1
CCTTTGGGAGGACCTTTTAAACAATAAGCATGGCGTTGACCCCGCGGCGTGTCCGGCTCAAGCCCTGGCTAGTGGACCAGGTGGACAGTGGGTTCTACCCAGGCCTGGTGTGGATTGACCGAGACAATAAGCGCTTCAGGATCCCCTGGAAACACGCTACACGGCACACCCCCCAGCACGAGGAAGAAAACACTATTTTTAAGGCCTGGGCGTTAGAGACCGGAAAGTTCCAGGAGGGTATTGATGATCCTGACCCTGCCAAGTGGAAAGCTCAGCTCCGCTGCGCCCTCAACAAGAGCAGAGAGTTCAACCTTGTCTACGACGGCACCAAAGAAGTCCCCATGAACCCCCTGAAGATCTACGACATCTGTGACATCCcacagcccctcagtaacccaggatCTTCAGACCCGGGGTCTTGGACACCAAATGATGGGGATGAAgatgaatcagatggctcagagCCCCTCCCTCCTTATCCAAAATCCAACGGCACCAGCCCCGCTCTTATGTGGTCTCCACCGGGGTCTGTATCGCCCCTCCAACCCCCCAGCTGTCCCCCATCAGTTGAAGTGTGGCCCAAAGAGGAAGTTAAGCTGTGGCCCAAAGAAGAGCCTTTGGATATGGAGATGCAGCCTTCGTCCCTGGAGATGGCGCCCCCCCCACCACTGGACATGCTTCCCCCTCCCATGCCTGACGTGATGTTCGCCTCGCCAGAGATGTGGATCAGCTCCTTGCCTAtgacagaCCTGGAGGTGCAGTTCCAGTACCGGGGTAAGGAGGTGTGTCCAGCCATGACGGTCAGTAACCCCCAGGGCTGTAGGCTTTTCTACGGGGACCTAGGTCCCATGGTCAACCAGGAGGAGCTGTTTGGTCCTATCAGCCTGGAGCAGCTGAGGTTCCCCTCTACTGAGCACATCGCCAACGACACGCAGAGGGTCTTCACCAACCGCCTGCTGGATGTCATGGACCGAGGCCTCGTCCTGGAGATCAGCGGCCATGACATCTATGCCATCCGCCTCTGCCAATGCAAGGTGTACTGGTCAGGCCCTTGCGCCCCCAACCCCAAAGCACCCAACCTCatagagaggcagaggaagaTCAAGCTGTTCTGTCTGGAGTCCTTTCTCAGTGATGTGATAGCCCATCAGAGGGGCCAGTCGGCCAGCCCTCCTCAGTTCGACATCAACCTGTGCTTCGGAGAGGAGTGGCCTGACAGCAGACCCAAAGAGAAGAAGCTCATCATGGTACAGATTATTCCAGTGGTAGCACGTATGATCACTGAGATGTTCTCAGGCGACTGCATGCGCTCCTTCGACAGCGGCAGCGTGCGCCTGCAGATCTCCATCCcagacatcaaggacaacatcgTGACCCACCTGAAGCAGCTGTACCGCCTGCTGCAGACCCACCAGGGCCAGGAAGGTTGGCCTCAGGCTCTGGCCCCAGGAGCCGGCATGCACCTGTCCCCGGCCCTGCATGCCCAGTGAAGTAGCCTAGTCCACCACGGCCCTACCAGAccagtcagtctctctcacacacagctctGTTTGGACACTGCTGCCTCTCTACTGCTGGTCCAAGAGGGGATCTATAATCAGCAAACTAGTACTTATGTTTATAGAGGCATGTTCATCAGAATAGGGAGAGGAATCACATTGATTTAGCTTCTTTTCCCCCTTTTGTTATTATGGTCTATTATAGGGTTCATTGGTCCATGTGTATATATTGTGGTAAATGCTGCTACCAGGCATTGTAATTATACTGTTACTGTGGCAGTCAGTAAAACATGGTGTGGTGATAGTGTCTGTCTGCAGTTGTAAGCTCCAGGGCCTTGAACCAGAGCAGCATTGTGGGTCAAAGTCCTGTAGGCTGCAAGTCAACATTGAACATCGTCAATGAGTTACAGACATGACCCTGGTCGCCAGTTACACAATACAGACAGTGACTTCTGAATAATCATCAAGCTTTGTCCTGGTCCTTGTTGTTCATAAAACATGATCTCAATCTCATGTTTGCTACCTGTTTGAGTGCTAATGCATTTTAGAAGATTTAGTTGAACTTTCATCAATAAGTGATACatgcatatactgtactttaAGTTATCCGTTTATTATAAACAATATAAAGAAAAAGTAGCATTGTGACATTTGCAttttaagtcatttagcagacacttacagcgacttacaggagcagttAGGGATACGCTCCtttctcaagggcacatcaacagatttttcacctactCGGctcgggatttgaaccagcaacctttcagttactggctccCCGCTCTTAACGGCTAGACTACCTACCGCCCATGACTGTTGAGATCCATTCCTTCATGTGATTCTAACTGGTCTTGCTAGGTATGTGAACAGTTTACTATAACTTAGTTTTTTGTGAAGATCATTTAAAGATGCTAGTAGAGAAAATCATTTAAATGTTGATTTTCCAGATGTATATCCTACACTTATCATTATATGGAATTGAATCTATTTGTTTAGTAAAACCTAGTATACGGGGTGTGCACTTAATGTTAGAAAGGATCTCAACTCTTTTTCCCTCTAATGATTTGTATTTTCCTTTTTTTGAAATAAAAATGTCAAATTA
>XM_036983649.1
TGGGAAGAAGTCCACCTTATGACAATAAGCATGGCGTTGACCCCGCGGCGTGTCCGGCTCAAGCCCTGGCTAGTGGACCAGGTGGACAGTGGGTTCTACCCAGGCCTGGTGTGGATTGACCGAGACAATAAGCGCTTCAGGATCCCCTGGAAACACGCTACACGGCACACCCCCCAGCACGAGGAAGAAAACACTATTTTTAAGGCCTGGGCGTTAGAGACCGGAAAGTTCCAGGAGGGTATTGATGATCCTGACCCTGCCAAGTGGAAAGCTCAGCTCCGCTGCGCCCTCAACAAGAGCAGAGAGTTCAACCTTGTCTACGACGGCACCAAAGAAGTCCCCATGAACCCCCTGAAGATCTACGACATCTGTGACATCCcacagcccctcagtaacccaggatCTTCAGACCCGGGGTCTTGGACACCAAATGATGGGGATGAAgatgaatcagatggctcagagCCCCTCCCTCCTTATCCAAAATCCAACGGCACCAGCCCCGCTCTTATGTGGTCTCCACCGGGGTCTGTATCGCCCCTCCAACCCCCCAGCTGTCCCCCATCAGTTGAAGTGTGGCCCAAAGAGGAAGTTAAGCTGTGGCCCAAAGAAGAGCCTTTGGATATGGAGATGCAGCCTTCGTCCCTGGAGATGGCGCCCCCCCCACCACTGGACATGCTTCCCCCTCCCATGCCTGACGTGATGTTCGCCTCGCCAGAGATGTGGATCAGCTCCTTGCCTAtgacagaCCTGGAGGTGCAGTTCCAGTACCGGGGTAAGGAGGTGTGTCCAGCCATGACGGTCAGTAACCCCCAGGGCTGTAGGCTTTTCTACGGGGACCTAGGTCCCATGGTCAACCAGGAGGAGCTGTTTGGTCCTATCAGCCTGGAGCAGCTGAGGTTCCCCTCTACTGAGCACATCGCCAACGACACGCAGAGGGTCTTCACCAACCGCCTGCTGGATGTCATGGACCGAGGCCTCGTCCTGGAGATCAGCGGCCATGACATCTATGCCATCCGCCTCTGCCAATGCAAGGTGTACTGGTCAGGCCCTTGCGCCCCCAACCCCAAAGCACCCAACCTCatagagaggcagaggaagaTCAAGCTGTTCTGTCTGGAGTCCTTTCTCAGTGATGTGATAGCCCATCAGAGGGGCCAGTCGGCCAGCCCTCCTCAGTTCGACATCAACCTGTGCTTCGGAGAGGAGTGGCCTGACAGCAGACCCAAAGAGAAGAAGCTCATCATGGTACAGATTATTCCAGTGGTAGCACGTATGATCACTGAGATGTTCTCAGGCGACTGCATGCGCTCCTTCGACAGCGGCAGCGTGCGCCTGCAGATCTCCATCCcagacatcaaggacaacatcgTGACCCACCTGAAGCAGCTGTACCGCCTGCTGCAGACCCACCAGGGCCAGGAAGGTTGGCCTCAGGCTCTGGCCCCAGGAGCCGGCATGCACCTGTCCCCGGCCCTGCATGCCCAGTGAAGTAGCCTAGTCCACCACGGCCCTACCAGAccagtcagtctctctcacacacagctctGTTTGGACACTGCTGCCTCTCTACTGCTGGTCCAAGAGGGGATCTATAATCAGCAAACTAGTACTTATGTTTATAGAGGCATGTTCATCAGAATAGGGAGAGGAATCACATTGATTTAGCTTCTTTTCCCCCTTTTGTTATTATGGTCTATTATAGGGTTCATTGGTCCATGTGTATATATTGTGGTAAATGCTGCTACCAGGCATTGTAATTATACTGTTACTGTGGCAGTCAGTAAAACATGGTGTGGTGATAGTGTCTGTCTGCAGTTGTAAGCTCCAGGGCCTTGAACCAGAGCAGCATTGTGGGTCAAAGTCCTGTAGGCTGCAAGTCAACATTGAACATCGTCAATGAGTTACAGACATGACCCTGGTCGCCAGTTACACAATACAGACAGTGACTTCTGAATAATCATCAAGCTTTGTCCTGGTCCTTGTTGTTCATAAAACATGATCTCAATCTCATGTTTGCTACCTGTTTGAGTGCTAATGCATTTTAGAAGATTTAGTTGAACTTTCATCAATAAGTGATACatgcatatactgtactttaAGTTATCCGTTTATTATAAACAATATAAAGAAAAAGTAGCATTGTGACATTTGCAttttaagtcatttagcagacacttacagcgacttacaggagcagttAGGGATACGCTCCtttctcaagggcacatcaacagatttttcacctactCGGctcgggatttgaaccagcaacctttcagttactggctccCCGCTCTTAACGGCTAGACTACCTACCGCCCATGACTGTTGAGATCCATTCCTTCATGTGATTCTAACTGGTCTTGCTAGGTATGTGAACAGTTTACTATAACTTAGTTTTTTGTGAAGATCATTTAAAGATGCTAGTAGAGAAAATCATTTAAATGTTGATTTTCCAGATGTATATCCTACACTTATCATTATATGGAATTGAATCTATTTGTTTAGTAAAACCTAGTATACGGGGTGTGCACTTAATGTTAGAAAGGATCTCAACTCTTTTTCCCTCTAATGATTTGTATTTTCCTTTTTTTGAAATAAAAATGTCAAATTA
>XM_021609915.2
ACGGCTCTACCTGAGTTTCGTTAGGGGAAGCGGAAAAGGCATAAACTGCTCGGCCTGCTCCGGACATTATCAGAATTAATCTCCCGTGATAAGAAGTATCCGTGGGTCATCTATACGTTTACCTGGATTGCAAAGGACATAGAAGTTCCAACATTTTGGAGAATAATATTTTCCTGAAGTTTGGGATTCTACCTTCTCCCAGATCTTAAGTATCCTACTTCCTGGTTACGTTCAACAGCAGACAATAAGCATGGCGTTGACCCCGCGGCGTGTCCGGCTCAAGCCCTGGCTAGTGGACCAGGTGGACAGTGGGTTCTACCCAGGCCTGGTGTGGATTGACCGAGACAATAAGCGCTTCAGGATCCCCTGGAAACACGCTACACGGCACACCCCCCAGCACGAGGAAGAAAACACTATTTTTAAGGCCTGGGCGTTAGAGACCGGAAAGTTCCAGGAGGGTATTGATGATCCTGACCCTGCCAAGTGGAAAGCTCAGCTCCGCTGCGCCCTCAACAAGAGCAGAGAGTTCAACCTTGTCTACGACGGCACCAAAGAAGTCCCCATGAACCCCCTGAAGATCTACGACATCTGTGACATCCcacagcccctcagtaacccaggatCTTCAGACCCGGGGTCTTGGACACCAAATGATGGGGATGAAgatgaatcagatggctcagagCCCCTCCCTCCTTATCCAAAATCCAACGGCACCAGCCCCGCTCTTATGTGGTCTCCACCGGGGTCTGTATCGCCCCTCCAACCCCCCAGCTGTCCCCCATCAGTTGAAGTGTGGCCCAAAGAGGAAGTTAAGCTGTGGCCCAAAGAAGAGCCTTTGGATATGGAGATGCAGCCTTCGTCCCTGGAGATGGCGCCCCCCCCACCACTGGACATGCTTCCCCCTCCCATGCCTGACGTGATGTTCGCCTCGCCAGAGATGTGGATCAGCTCCTTGCCTAtgacagaCCTGGAGGTGCAGTTCCAGTACCGGGGTAAGGAGGTGTGTCCAGCCATGACGGTCAGTAACCCCCAGGGCTGTAGGCTTTTCTACGGGGACCTAGGTCCCATGGTCAACCAGGAGGAGCTGTTTGGTCCTATCAGCCTGGAGCAGCTGAGGTTCCCCTCTACTGAGCACATCGCCAACGACACGCAGAGGGTCTTCACCAACCGCCTGCTGGATGTCATGGACCGAGGCCTCGTCCTGGAGATCAGCGGCCATGACATCTATGCCATCCGCCTCTGCCAATGCAAGGTGTACTGGTCAGGCCCTTGCGCCCCCAACCCCAAAGCACCCAACCTCatagagaggcagaggaagaTCAAGCTGTTCTGTCTGGAGTCCTTTCTCAGTGATGTGATAGCCCATCAGAGGGGCCAGTCGGCCAGCCCTCCTCAGTTCGACATCAACCTGTGCTTCGGAGAGGAGTGGCCTGACAGCAGACCCAAAGAGAAGAAGCTCATCATGGTACAGATTATTCCAGTGGTAGCACGTATGATCACTGAGATGTTCTCAGGCGACTGCATGCGCTCCTTCGACAGCGGCAGCGTGCGCCTGCAGATCTCCATCCcagacatcaaggacaacatcgTGACCCACCTGAAGCAGCTGTACCGCCTGCTGCAGACCCACCAGGGCCAGGAAGGTTGGCCTCAGGCTCTGGCCCCAGGAGCCGGCATGCACCTGTCCCCGGCCCTGCATGCCCAGTGAAGTAGCCTAGTCCACCACGGCCCTACCAGAccagtcagtctctctcacacacagctctGTTTGGACACTGCTGCCTCTCTACTGCTGGTCCAAGAGGGGATCTATAATCAGCAAACTAGTACTTATGTTTATAGAGGCATGTTCATCAGAATAGGGAGAGGAATCACATTGATTTAGCTTCTTTTCCCCCTTTTGTTATTATGGTCTATTATAGGGTTCATTGGTCCATGTGTATATATTGTGGTAAATGCTGCTACCAGGCATTGTAATTATACTGTTACTGTGGCAGTCAGTAAAACATGGTGTGGTGATAGTGTCTGTCTGCAGTTGTAAGCTCCAGGGCCTTGAACCAGAGCAGCATTGTGGGTCAAAGTCCTGTAGGCTGCAAGTCAACATTGAACATCGTCAATGAGTTACAGACATGACCCTGGTCGCCAGTTACACAATACAGACAGTGACTTCTGAATAATCATCAAGCTTTGTCCTGGTCCTTGTTGTTCATAAAACATGATCTCAATCTCATGTTTGCTACCTGTTTGAGTGCTAATGCATTTTAGAAGATTTAGTTGAACTTTCATCAATAAGTGATACatgcatatactgtactttaAGTTATCCGTTTATTATAAACAATATAAAGAAAAAGTAGCATTGTGACATTTGCAttttaagtcatttagcagacacttacagcgacttacaggagcagttAGGGATACGCTCCtttctcaagggcacatcaacagatttttcacctactCGGctcgggatttgaaccagcaacctttcagttactggctccCCGCTCTTAACGGCTAGACTACCTACCGCCCATGACTGTTGAGATCCATTCCTTCATGTGATTCTAACTGGTCTTGCTAGGTATGTGAACAGTTTACTATAACTTAGTTTTTTGTGAAGATCATTTAAAGATGCTAGTAGAGAAAATCATTTAAATGTTGATTTTCCAGATGTATATCCTACACTTATCATTATATGGAATTGAATCTATTTGTTTAGTAAAACCTAGTATACGGGGTGTGCACTTAATGTTAGAAAGGATCTCAACTCTTTTTCCCTCTAATGATTTGTATTTTCCTTTTTTTGAAATAAAAATGTCAAATTA

Function

NR:

description
interferon regulatory factor 6-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060429 epithelium development biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10154 IRF6; interferon regulatory factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983650.1 False 2616 mRNA 0.50 8 59043271 59047285
XM_036983649.1 False 2617 mRNA 0.50 8 59043271 59047423
XM_021609915.2 True 2837 mRNA 0.49 8 59043271 59047897
Loading

Neighbor

gene id symbol gene type direction distance location
eps8l3a LOC106583072 coding downstream 5545 59022694 ~ 59037726 (-)
LOC110528094 LOC106583073 coding downstream 72451 58948456 ~ 58970820 (-)
LOC110528090 LOC106583075 coding downstream 147473 58890001 ~ 58895798 (-)
LOC110528983 LOC106565665 coding downstream 175055 58846467 ~ 58868216 (-)
LOC118965303 LOC106565665 coding downstream 197903 58843679 ~ 58845368 (-)
LOC110528100 mep50 coding upstream 37205 59085102 ~ 59094461 (-)
LOC110527129 LOC106583068 coding upstream 51378 59099275 ~ 59105032 (-)
LOC110528101 LOC106583060 coding upstream 68551 59116448 ~ 59128446 (-)
LOC110528103 LOC106583067 coding upstream 84662 59132559 ~ 59157301 (-)
LOC110528106 LOC106565518 coding upstream 269944 59317841 ~ 59324089 (-)
G629307 NA non-coding downstream 28598 59012582 ~ 59014673 (-)
G629264 NA non-coding downstream 82510 58959423 ~ 58960761 (-)
G629197 NA non-coding downstream 101107 58941944 ~ 58942164 (-)
G629193 NA non-coding downstream 104168 58938815 ~ 58939103 (-)
G629190 NA non-coding downstream 107761 58935118 ~ 58935510 (-)
G629313 NA non-coding upstream 1680 59049577 ~ 59049803 (-)
G629742 NA non-coding upstream 10796 59058693 ~ 59079816 (-)
G629777 NA non-coding upstream 57205 59105102 ~ 59105380 (-)
G629804 NA non-coding upstream 133016 59180913 ~ 59223560 (-)
sfrs3 sfrs3 other downstream 329697 58707572 ~ 58713630 (-)
LOC110528083 LOC106583085 other downstream 347504 58691817 ~ 58695856 (-)
LOC110528069 LOC106583062 other downstream 613900 58425680 ~ 58437154 (-)
G628714 NA other downstream 925149 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 1169940 57872050 ~ 57873331 (-)
G630132 NA other upstream 699553 59747450 ~ 59752591 (-)
G630227 NA other upstream 868082 59915979 ~ 59917551 (-)
G630747 NA other upstream 1035149 60083046 ~ 60083857 (-)
LOC110528989 LOC106583145 other upstream 1690598 60699279 ~ 60822525 (-)
G631740 NA other upstream 2142811 61190708 ~ 61191045 (-)

Expression

LOC110528098(LOC106583071) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
End of interactive chart.

LOC110528098(LOC106583071) Expression in each Bioproject

Bar chart with 21 bars.
LOC110528098(LOC106583071) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
End of interactive chart.

Co-expression Network