LOC110528104 (LOC106565516)


Basic Information

Item Value
gene id LOC110528104
gene name LOC106565516
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 59269662 ~ 59293823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609921.2
TGGGACGATGTGTAAGAGCGGAAAGAGGGAGCACAGGAACTTTGTGCGAGAGGGCGGGGGAGCAGAGCGCGCGACTgtcaagaggagagaggaggaaatctAACAAGTGAGAAAACTGTTGCATTTTGGTAAAGACGCTTATCAGTGGATTAAAATATGAAAATCTACAATAATTCTCTTTAGAATATCTTGGAGCATAGAAAGGAAGTGAAAAGTTAATTAGATAAGTGGTGGCCTAAGTCACTATTTTGTTCCCTCTGTCTGCCTTGGGTGTTGATGACCAACGAGTGACCTGTTACTCACTGACTGGAAAAATAATCAGTCGGCATAACGACGATTCGTTGTATTGAGAGAAAAACAAAAGTGAATTTGCTGTTAGTTTTCGAGTTCATCTGACTATTCCAGAGCTTGACAACTCACGGAGACGACGGTGAGGATGCGCTGTCTTCACTGTTTTCTCGACCACGTTGAAAGTCTACCTGCGCGAAACTGAAGGGTTCACCTTCCCACAGCGTATCTCAGATCATCGACACTTCTATTGTGCAGCGAGGAGCAAAAGAATGCTCCTGGCACAAGATGTCTGATTTACAGGCGAGCAGTGGAACCTTAGATATTCTCTGCTACGACTCAACTCACCACAAAAAAAACCAGAGAAGCAAGTTTTTATGAGGAACAGAACATTTTCTCAGTACTGTTTCAATAAATACtgacttttgaaaaaaaaatcaCCTTCCAACAACCATATCTGAGAGGGGAATTTGTTAGTCTACCCAAGAGGAAAACAGACCCAGGATTAAGCGATGAAAAGTacatagagaaagagaaacacaAGGAAGGAGGAATAGGAACAAATACAAGAGATTTAAGCGCTCTTTCATTCCTCTCCACTCATCCTTGGACCAGACAAGTGAGTGCCCTTCACTGAATGCCGTGGGTGAGATGGACTCCTTTGGGAATACTGGAGCAGACCCCACCTGACAGCTCTCCAACTGAGAAATATAAGGACATTCCACCAGGAGATTCTGCTGCCATTCTGGctgaaaaatatttatatttttagagAACCCTCTAGAACAATCTACACTCCATCCCAGGGAAAAACCTTGCATTTAACCTTCCAAAGAACTGGATGTGGAACTTAGTCAGTTTCAACCCGTGTCTGTAACACTGAGAAGGTGTCCACACTCAACTGGCTGGTTTCACCTCTAGCCCTCTGAAAGAAAATAACATACTACATTTGATATCAGTGAGCTCTTTACTGAAAAGAAGGATGAAGAAAGTGAATAAATATTGTTTTGCAGATTAAACATTTTACGTTAAAAAATAAATGTGGAGAAAAAGGTTTTGACAAATTTGAGGATAAACCtagaaaaacattttaaaaaatgaacggaatgaaaacatgttttgtaTTCTCTTCCTGACATTTGACTTCAACGACTCATGACTTTGTGACATTGAGCTTTGCTGTTCCTTAAGTGTCCTATATCATCTCATTCCTGTCTTTACGTTGAAATCTCCTATATTTATAGTCTTTCCTCACAACCCTCCTACCTTTTCGCTCTCCCTCATTTACATCTTATTTCCCTTAGGTAAAATTAACTACTTCACCCCCTACTCCCAGTGTAGAACCTCTCTGTCCCATCGCCTTTCCCCCTTTAGcccctctctcaccatctctcccccTAGTCCTGGTTTTCCCAGAGTTCATTCTGGCCGGCACCACCATTCCGGCCAAGGGGGAGGAGGACTTCCTCACTCTGGCCGCCTCCCGGCTCAGCCGCAGGAAACGTGTCATCGGGGCAGGAGTGGGCGTGGCTATGGTGCTGGTGCTGCTGGTTGCCATCCCCTTATTGGTTCACACCACCAAAGGGGGGGCGTCTGGAGGCGGGAGCACCCATTATGAGATGCTCGGCAGCTGCAAGATGGTGTGCGACTCTTTCACCCCCCCACAGGGCAGCCACGAGCTGACCGCTGTCTCCCCCCAACCCCCAGACTTCACAGGGAGAAGGGGCAAGTCTGGGTTTCGTGGGAGCCCTGGCCCCCCAGGCCCCAGAGGTCCCACAGGAGAACCAGGCAAGCCAGGCCCCCCTGGTCCCCCCGGCCCTGGCCCAGGGGGCTACATCCCCTCCTTCTACAGCCCCAAGATCGCCTTCTACGCTGGCCTCCGCAAACAGCATGAAGGGAGTGAGGTGTTGAGGTTTGACGACGTAGTGACCAATGTGGGGAACTACTATGAACCCAGTACTGGCAAGTTCACCTGCCCCCTACCTGGCATCTACTTCTTCACCTACCATGTCCTGATGAGGGGCGGAGATGGGACCAGCATGTGGGCCGACTTAAAAAAGAATGgacaggtgaggGCCAGTGCCATTGCCCAGGATGCTGATCTGAACTATGACTATGCCTCCAACAGTGTCATCCTGCACCTGGATGTGGGGGACGAGGTGTGCGTGCAGCTCGACGGGGGCAAAGTTCACGGAGGAAACACCAACAAATACAGCACCTTCTCTGGCTTCCTCATCTACCCTGATTGAAGGCATccacatgtcacacacacacacacacacaaccatacacacacattctcccAGGCAAACAAATACAGCAACTTTTTCAGGATCCTCATCCAACCTGATTCTCTCAaccactctcttctctccactctctctttcacaccatTGCTAAAACACACAGTATTTAGAGAAACAGATGCAATGGGAAAAGGAAATgtataatgtctgtgtttttAATGTCTAGATAATGGTCATACCATAACATTCCAAACCAAGTGTAGTTACAAGGCATATAATGTGCATATAGACTGTGTTTATACGCATTTTTATTTAATACACACACCCATTTGTTTGTCATGTGTTTTGTCATTCTCATGATATCATTGAATCACAGATATGTAAATGAAACTAACATGTAAGTATGGGGTGACAAACAAGAATTATGTCAAGACAAAAACTTGTTTAAAGATCATCTTGATATCGTGTGTATTCTTAAAGTTACATATATATTCACTTCTGATGCGCACACATCTGTGTGTATGATCATGTATGTGAAAGTATACCTACATGACTCGCATAcaactctttcacacacacacacacacacacagtgattcaTTGAACTTCCCCTATCTAGTGTTGCATTGACATGGGCTGACCATTTCAGCCACCAGTGTGGAATTTAGTAAAATGGTCTCAGATTGCAGACTGTAAATGGAAGACTGCGAGGTTGGTTGCGGGGCTTCCCGCCTCCCTTCTTCGCTCCAAGATGGATTTCCAATACGGCTGAAGACACCAAATGAGAAAAGTCATGAATATATTGATCGGAGCTGATAATACACCCAACACCACGAACATCAtccagtgtggtgtgtgtaagaTAAGTATCATGTTGTTAGTTTTACCTACATGGCCCCTGCCTACAGCTaaggggggtggggaggggtgATGGTAGTCCCCTCACACACAGGATATCAATGATGAGGCTTATGGTAGACAGATACAGTATTTTTCCAGACCTTATGGTGGATGACAGAGCATCATCGTGTTCCACTAATGAGCCCATCCTTTGTTTAAACCCTCAAACCCTATTCCTATATTCACATTACATTAAATTGATAACAGAGCAATTTAAACTGGGTGTCGAACCCAGACATAATCAGAGATGGAGCTTTAGATCATGGAGAGACGATGCTTTAGTTCATGGAGAGACGATGCTTTAGTTCATGGAGAGACGATGCTTTAGTTCATGGAGAGACGATGCTTTAGTTCATGGAGAGACGATGCTTTAGTTCATGGAGAGACGATGCTTTAGTTCATGGAGAGACGATGCTTTAGTTCATGGAGAGATGATGCTTTAGTTCATGGAGAGATGATGCTTTAGATCATGGAGAGATGATGCTTTAGATCATGGAGAGATGATGCTTTAGTTCATGGCCAGTTGGTCATTTGTATAATGATGAGTCTTCTTTTCTTCTAAGGTAAAGCAGCCTGTTTGTTTACAGTGTGGATACCGACATTGAGGATTCATCTTGTACTCTGTACAGAACTAGtttcacattttaaaatgtacgCTGCTACCGTAGAACTAGAAACGGACTGAGTGTCTTCAATGGAAATGTACATCTTTGTGTGTTATTGAATGTACCATACATTACTAATTGTGTAAATGCAATTCAAATATGCAGGTTCAGGTTGATGCTGTCTGTCAAATATGTTATGCAAACCCTTGACACAGTGGCAATGAGACTATATTGTGTCACTTGTGTTATCGATCAAGAATGGATTTCATGGAAATTTTAGAGTGGGGGCATTATTACCTTGTCAggccattaaaaaaaaatatacatcaATGTGAATGCCCTGCCTTGACAATACCATGAAAAGCAGGTCCTTCTCCTGTAGTTCATAGCATCATACATGTACCTAATGTAAGTAGTTGTACATGTTACAGGACTTCAGAGGAGGCCTCTATTGTAACAAGTTGTTGTATTAGGAAAACCACTGAATAAATGCAGCTGCAGCAGGGATGATACTGCTACTCCATGTGTGTGCATTACTGTTGCAACACAGTATGACCGGTGTGTGTGTCGCGTCTCAGGTCCAACTACAGGACAGAGCTTTGGGCTTGATCTAAAGACAGAACACCAGTTATTATCAAACTGCATCAGTCAGATGAAAACATTATTCCTGTACTATATCTTAACTGACAGTATTACAATAACCACCTACCATCTTATTTAAACCAACATAATGTACTGATTTGTTTGTCTGTACATGACTTCTGTGTCATGCTGCATTCTACTGTGTTCCCTGGCACTAAATAATGTTAAATAACTTACTGTTGAAAAGGAAACCTGGTCTTTGTTTATGAACGGTATGAATTGATTGTTGTCATTGTACCTTGTGTGTATATCTTATGTATAATATTATAAACAACAATTTAATCTACCCTAAAGGTAATATATAAGACCTACAATAAAACAATGTGAAGACGC
>TU715686
TATTGTTTTGCAGATTAAACATTTTACGTTAAAAAATAAATGTGGAGAAAAAGGTTTTGACAAATTTGAGGATAAACCtagaaaaacattttaaaaaatgaacggaatgaaaacatgttttgtaTTCTCTTCCTGACATTTGACTTCAACGACTCATGACTTTGTGACATTGAGCTTTGCTGTTCCTTAAGTGTCCTATATCATCTCATTCCTGTCTTTACGTTGAAATCTCCTATATTTATAGTCTTTCCTCACAACCCTCCTACCTTTTCGCTCTCCCTCATTTACATCTTATTTCCCTTAGGTAAAATTAACTACTTCACCCCCTACTCCCAGTGTAGAACCTCTCTGTCCCATCGCCTTTCCCCCTTTAGcccctctctcaccatctctcccccTAGTCCTGGTT
>TU715685
GTACTGGCAAGTTCACCTGCCCCCTACCTGGCATCTACTTCTTCACCTACCATGTCCTGATGAGGGGCGGAGATGGGACCAGCATGTGGGCCGACTTAAAAAAGAATGgacaggtgaggGCCAGTGCCATTGCCCAGGATGCTGATCTGAACTATGACTATGCCTCCAACAGTGTCATCCTGCACCTGGATGTGGGGGACGAGGTGTGCGTGCAGCTCGACGGGGGCAAAGTTCACGGAGGAAACACCAACAAATACAGCACCTTCTCTGGCTTCCTCATCTACCCTGATTGAAGGCATccacatgtcacacacacacacacacacaaccatacacacacattctcccAGGCAAACAAATACAGCAACTTTTTCAGGATCCTCATCCAACCTGATTCTCTCAaccactctcttctctccactctctctttcacaccatTGCTAAAACACACAGTATTTAGAGAAACAGATGCAATGGGAAAAGGAAATgtataatgtctgtgtttttAATGTCTAGATAATGGTCATACCATAACATTCCAAACCAAGTGTAGTTACAAGGCATATAATGTGCATATAGACTGTGTTTATACGCATTTTTATTTAATACACACACCCATTTGTTTGTCATGTGTTTTGTCATTCTCATGATATCATTGAATCACAGATATGTAAATGAAACTAACATGTAAGTATGGGGTGACAAACAAGAATTATGTCAAGACAAAAACTTGTTTAAAGATCATCTTGATATCGTGTGTATTCTTAAAGTTACATATATATTCACTTCTGATGCGCACACATCTGTGTGTATGATCATGTATGTGAAAGTATACCTACATGACTCGCATAcaactctttcacacacacacacacacacacagtgattcaTTGAACTTCCCCTATCTAGTGTTGCATTGACATGGGCTGACCATTTCAGCCACCAGTGTGGAATTTAGTAAAATGGTCTCAGATTGCAGACTGTAAATGGAAGACTGCGAGGTTGGTTGCGGGGCTTCCCGCCTCCCTTCTTCGCTCCAAGATGGATTTCCAATACGGCTGAAGACACCAAATGAGAAAAGTCATGAATATATTGATCGGAGCTGATAATACACCCAACACCACGAACATCAtccagtgtggtgtgtgtaagaTAAGTATCATGTTGTTAGTTTTACCTACATGGCCCCTGCCTACAGCTaaggggggtggggaggggtgATGGTAGTCCCCTCACACACAGGATATCAATGATGAGGCTTATGGTAGACAGATACAGTATTTTTCCAGACCTTATGGTGGATGACAGAGCATCATCGTGTTCCACTAATGAGCCCATCCTTTGTTTAAACCCTCAAACCCTATTCCTATATTCACATTACATTAAATTGATAACAGAGCAATTTAAACTGGGTGTCGAACCCAGACATAATCAGAGATGGAGCTTTAGATCATGGAGAGACGATGCTTTAGTTCATGGAGAGACGATGCTTTAGTTCATGGAGAGACGATGCTTTAGTTCATGGAGAGACGATGCTTTAGTTCATGGAGAGACGATGCTTTAGTTCATGGAGAGACGATGCTTTAGTTCATGGAGAGACGATGCTTTAGTTCATGGAGAGATGATGCTTTAGTTCATGGAGAGATGATGCTTTAGATCATGGAGAGATGATGCTTTAGATCATGGAGAGATGATGCTTTAGTTCATGGCCAGTTGGTCATTTGTATAATGATGAGTCTTCTTTTCTTCTAAGGTAAAGCAGCCTGTTTGTTTACAGTGTGGATACCGACATTGAGGATTCATCTTGTACTCTGTACAGAACTAGtttcacattttaaaatgtacgCTGCTACCGTAGAACTAGAAACGGACTGAGTGTCTTCAATGGAAATGTACATCTTTGTGTGTTATTGAATGTACCATACATTACTAATTGTGTAAATGCAATTCAAATATGCAGGTTCAGGTTGATGCTGTCTGTCAAATATGTTATGCAAACCCTTGACACAGTGGCAATGAGACTATATTGTGTCACTTGTGTTATCGATCAAGAATGGATTTCATGGAAATTTTAGAGTGGGGGCATTATTACCTTGTCAggccattaaaaaaaaatatacatcaATGTGAATGCCCTGCCTTGACAATACCATGAAAAGCAGGTCCTTCTCCTGTAGTTCATAGCATCATACATGTACCTAATGTAAGTAGTTGTACATGTTACAGGACTTCAGAGGAGGCCTCTATTGTAACAAGTTGTTGTATTAGGAAAACCACTGAATAAATGCAGCTGCAGCAGGGATGATACTGCTACTCCATGTGTGTGCATTACTGTTGCAACACAGTATGACCGGTGTGTGTGTCGCGTCTCAGGTCCAACTACAGGACAGAGCTTTGGGCTTGATCTAAAGACAGAACACCAGTTATTATCAAACTGCATCAGTCAGATGAAAACATTATTCCTGTACTATATCTTAACTGACAGTATTACAATAACCACCTACCATCTTATTTAAACCAACATAATGTACTGATTTGTTTGTCTGTACATGACTTCTGTGTCATGCTGCATTCTACTGTGTTCCCTGGCACTAAATAATGTTAAATAACTTACTGTTGAAAAGGAAACCTGGTCTTTGTTTATGAACGGTATGAATTGATTGTTGTCATTGTACCTTGTGTGTATATCTTATGTATAATATTATAAACAACAATTTAATCTACCCTAAAGGTAATATATAAGACCTACAATAAAACAATGTGAAGACGC

Function

NR:

description
PREDICTED: complement C1q-like protein 4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609921.2 False 5014 mRNA 0.43 3 59269662 59293823
TU715686 False 409 lncRNA 0.38 1 59271597 59272005
TU715685 True 2770 lncRNA 0.41 2 59272553 59293823

Neighbor

gene id symbol gene type direction distance location
LOC110528099 LOC106583069 coding upstream 184963 59068637 ~ 59084729 (+)
LOC110528097 LOC106583070 coding upstream 226804 59035073 ~ 59042858 (+)
LOC110528095 LOC106565671 coding upstream 246803 58969726 ~ 59022859 (+)
LOC110528093 gnai3 coding upstream 337221 58925940 ~ 58932441 (+)
LOC110528092 LOC106583074 coding upstream 348832 58915182 ~ 58920830 (+)
LOC110528105 LOC106583239 coding downstream 5219 59299042 ~ 59317047 (+)
LOC110528107 endou coding downstream 38170 59331993 ~ 59338641 (+)
LOC110528108 LOC106583237 coding downstream 50800 59344623 ~ 59349054 (+)
LOC110528109 LOC106583234 coding downstream 94939 59388762 ~ 59435880 (+)
gpr84 gpr84 coding downstream 143432 59437255 ~ 59443170 (+)
G629468 NA non-coding upstream 920 59268480 ~ 59268742 (+)
G629463 NA non-coding upstream 1803 59267630 ~ 59267859 (+)
G629458 NA non-coding upstream 6904 59262396 ~ 59262758 (+)
G629457 NA non-coding upstream 8757 59260596 ~ 59260905 (+)
G629392 NA non-coding upstream 109267 59160168 ~ 59160395 (+)
G629485 NA non-coding downstream 587 59294410 ~ 59294612 (+)
G629465 myl6 non-coding downstream 24022 59317845 ~ 59324020 (+)
G629493 NA non-coding downstream 32910 59326733 ~ 59327031 (+)
G629510 NA non-coding downstream 61280 59355103 ~ 59355421 (+)
G628468 LOC106583084 other upstream 556078 58708295 ~ 58713584 (+)
LOC110528980 LOC106583093 other upstream 765585 58502198 ~ 58589001 (+)
LOC110528055 LOC106583107 other upstream 1277790 57917801 ~ 58055214 (+)
G629678 NA other downstream 390508 59684331 ~ 59684763 (+)
G629679 NA other downstream 391049 59684872 ~ 59685187 (+)
LOC110528122 LOC106583221 other downstream 412130 59705922 ~ 59712261 (+)
G630206 NA other downstream 619717 59913345 ~ 59917551 (+)
mustn1a NA other downstream 813248 60107071 ~ 60109290 (+)

Expression


Co-expression Network