LOC110528116 (LOC106583226)


Basic Information

Item Value
gene id LOC110528116
gene name LOC106583226
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 59556060 ~ 59599625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609937.2
tccacacACACATAATGCTAGCCCACTATCTGACCACAGAGTGAGCTCAGTGAATTGTGGAAAGCATATTGtttctccacatctctccctctctctttcactcttccaCAGGGGATCCTAAAAGACTGGACTATTTCTTCTTTGGATATCCTCCTCCTGCTTTGGGATTTAACTGAGAGTAGAGCaagctttctttctttttctttcctgAAATGTTTTATCTTCTGGGGATTACCACAGAAATACCTCCTGTGTGCGTTTgagcgtgagtgtgtgtgagtgtgtgtgccctGTGCCATGCCCACCCCTGGTCGTTTTGGGACTAACGGCAGTGGATCAGCATGAAGGGGGGTCACCATCAGCGGGGGTGCGGGTGTCAACACCTGTTCCGAAAAGTACTGGCTAAGTGTGGCTGCTGCTACGCCCGAGTTCGAGaGTCGTACTCTGTGGCCGGCAGTGAGGGCAGCATCACTCCATCCGTAGGCTCTGTGGCCAACCAGGCCTCTGGCATCTCCAGCCCCTGCTCGGCCTCCTCCCCTGGGGAGTCACGGCACTCCGTCAGTGCCCTGAAGAAGTGGCTCACCAACCCTGTCCGCAAGCTGAgcgtggggggaggaggaggagtgaaagGAGGAGGGGGATACAAGGAGGACAGGCAGGTCCACAGGCTGGATGGGAagcatccctctcccctcctccctaacGGCCAAGCCCTTGGAAGGCCTCTGGAGCAGGGGGAGAACTACACAATCCTCCCCTGCACTGATGTGGACTTGGGGAATGATGGCCTGGTGAGTCCAGCGACGTACTCTCCAACACACCCTCTCTGTCACAGCTACCTATCTGACCTACTACaggacagggatacacacagtCTGAACCATCATTATTCCACTATTCTCCCAGAAGAAGAAGATGGCTCCTCCCTGATTGATGACTCGACCAGCCAATGGTCAGCCACCATGGACagtgaggaggacaggaggagtgcCTTAGAGAAGAGCATatATGTGCTGACAGagctgatagagacagagaagtTGTATGTGGACGACCTGGGCCTCATAGTAGAGGGCTACATGGCCAGCATGGCCACTCAAGGGATTCCAGAGGACTTGAAGGGCAAAGACAAGATAGTGTTCGGGAACATCCACCAGATCTATGACTGGCATAAAGACTATCTCCTGGGGGAGCTGGAGAAGTGTGTGTCAGAGCCCGACAGACTGGCCCAACTCTTCATCAAgcatGAGCGGCGTCTCCACATGTACGTAGTGTACTGTCAGAACAAGCCCAAGTCAGAGCACATTGTCTCAGAGTATATGGAGACCTACTTCGAGGAGCTGAGGCAGCAGCTGGGCCACAGACTACAACTCAACGACCTGCTCATCAAACCAGTACAGAGGATCATGAAATATCAACTACTgctcaagGACTTCCTGAAGTACTACACCAAAGCAGGAAGGGATACCTCAGAGCTGGAGAGAGCGGTGGAGGTGACGTGTTTCGTGCCCAAGCGCTGTAATGATATGATGAATGTGGGCAGGCTGCAGGGCTTTGAGGGGAAGATCACAGCCCAGGGGAAGCTGCTCCAGCAGGACACCTTTACAGTCAGTGAGCAGGACAGCAGCTTCCTGTCCCGCGCCAAGGAGAGGCGTGTCTTCCTGTTTGAACAGCTGGTCATTATCAGTGAGCCAATCGACAGGAAAAAGGGCTTCTCTCTGCCAGGGTACACCTTTAAAAACAGCATCAAGctcAGTTGTCTGGGTGTGGAGGACCACTCTGAAGAGGACCCATGTCGTCTGGTCCTGACGTCCCGCGGGCCTGATGGGAGCGTGACACGCTTCGTCCTACAGGCATCGTCCCCTGAGACGCGAAGGGCCTGGGTCAACGACGTGGTCCAGATCCTGGAGACACAGAGGAACTTCCTCAACGCTCTCCAGTCTCCCATAGAGTACCAGCGAAGGGAGTCCAACAGCCTGGGACGAGCCATGAGGGCACCCGTGGCAACGACCTCTGGCCTGCGACCCCACTCCTCGGCCTCCATTGACCGCCACCGGCTACCTTACCTGCACTCCTACAACACCTCTCTGCCCTCCCTGCACCTGCCCAGCCAGGGACCCACTGCAGACACACAGTCCCCACTGTACCTTAGCCCTGCAACACCCcgtccctctcacctccctctgaAGCTCACCTTGTCCCAAGAGGTCAGGCACTGCCAGGGGGTGTCCAACGGCCTGTGCCCCCCTACCCAGCACAGCTTACAGGGTGGTACTGTCTGTTACCATGGAGCCATGCCGGGGGAGGGAGGGACTTACGCATCGCATCGCTCAGGCAACCTGGATCAGCTAACTGAACTCTCTCTGCATGAGCATGAGTGCTGATAACCTTTGACTTCACAGCCTGAATGAAggggtgtagggtgaagttgcccctagacgctgatcttaggtcagtttaGAATTTCCCCCAGGTTAGGTTTGGGGGAtgaggaagctgatcctagatctgtacctagtgTAACCTTCACTCTCTAGCGAATGAGGGGCAGGCTGATAGAGCCCTGGTTAACCTGGTTCCACTCAGGACAGGCAGGGGGCCTGGGGCGGGGTTAGTTCAGACAGTTTCACTATCACAACTCTTGTGATTGCCCTAATAACATTATATTATAATTACTATGGTATCTCTAGCTTCTAATTATgatttttttgttggtatttCTGTCATATTACATTTTCTACTATTTTGAAACCTGTACTTACTATTGTGATGCGAGAAGTGAAGCAGGAATGCAGCCCTCTGGTGTTTGTGAGAGAAAAGGAAAAGTAGCcaatggtgtctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcaacgGTTGCTATTCACACTGCAAACcgtttctacagtacagtaccactcATATGGTGACACGCTTAACACCATTTGTTTTCGTATAGAAATAGACATTTGGGAACTACCACTTAAGCCGCCAGCCCTTTCATGTTGCTTTTTCTTAAACACGGGGACCATATTAACATTATGCTACTGCTACATGTGACAGATTTGATCACTTTGCACAACAAGGAAAGTAAAACAGCAGTGGGGAGGTAATGCCATATCtattctctgtccctcttcctaaATAGCTATCCTCCTATTCTGAATTCATCCTCACCACCATTTCATAAAGCAGCCTTTGGGCCAAGAGTGTTGACATTGTGGGCTGGAGAACTATTTGAGCTTGATTTGGACTGAATTTGTCCAGGGCTTGAGCAGTCATGATTGTCTACTCTATCCATTATTACTGTGTTGCTCGGTTTGCATACTTTTCCCTTCATTTAAGGGGCCACTTTAACCCTGCCATTGTTCCAACGTTATCTGAAGAAAACACACGTAAACTCATACAAAGCCCACTCCAAACTctgaaggagagaggaaaaggggacaCCGATAGAGGGCGTGCTCATCTGTCAGTGTTATCATGAATGTAAATAATCTGCTGTGAGATCATATCAATAAACAACGTTTATGAAACACTGCTGCTGTTTCTCCCCCCA

Function

NR:

description
rho guanine nucleotide exchange factor 25-like

GO: NA

KEGG:

id description
K20690 ARHGEF25; Rho guanine nucleotide exchange factor 25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609937.2 True 3628 mRNA 0.51 16 59556060 59599625

Neighbor

gene id symbol gene type direction distance location
LOC110528115 NA coding downstream 14549 59539797 ~ 59541511 (-)
os9 LOC106583228 coding downstream 39480 59504688 ~ 59516580 (-)
apof apof coding downstream 87318 59456533 ~ 59468742 (-)
LOC110528106 LOC106565518 coding downstream 231971 59317841 ~ 59324089 (-)
LOC110528103 LOC106583067 coding downstream 398759 59132559 ~ 59157301 (-)
LOC110528118 prkag1 coding upstream 57346 59656971 ~ 59664214 (-)
LOC110528119 rhebl1 coding upstream 67776 59667401 ~ 59671567 (-)
LOC110528120 lmbr1l coding upstream 73049 59672674 ~ 59694121 (-)
LOC110528124 LOC106565535 coding upstream 126787 59726412 ~ 59729413 (-)
LOC110528128 LOC106583146 coding upstream 290813 59890438 ~ 59895213 (-)
G629996 NA non-coding downstream 38812 59516972 ~ 59517248 (-)
G629995 NA non-coding downstream 53906 59501878 ~ 59502154 (-)
G629990 NA non-coding downstream 57693 59498131 ~ 59498367 (-)
G629989 NA non-coding downstream 58253 59497594 ~ 59497807 (-)
G629987 NA non-coding downstream 63490 59491766 ~ 59492570 (-)
G630092 NA non-coding upstream 79877 59679502 ~ 59680142 (-)
G630093 LOC106581475 non-coding upstream 80519 59680144 ~ 59680456 (-)
G630094 NA non-coding upstream 81300 59680925 ~ 59681153 (-)
G630096 NA non-coding upstream 82907 59682532 ~ 59682791 (-)
G630101 NA non-coding upstream 93681 59693306 ~ 59693511 (-)
sfrs3 sfrs3 other downstream 842486 58707572 ~ 58713630 (-)
LOC110528083 LOC106583085 other downstream 860293 58691817 ~ 58695856 (-)
LOC110528069 LOC106583062 other downstream 1126689 58425680 ~ 58437154 (-)
G628714 NA other downstream 1437938 58117190 ~ 58118122 (-)
G628575 LOC106579815 other downstream 1682729 57872050 ~ 57873331 (-)
G630132 NA other upstream 147825 59747450 ~ 59752591 (-)
G630227 NA other upstream 316354 59915979 ~ 59917551 (-)
G630747 NA other upstream 483421 60083046 ~ 60083857 (-)
LOC110528989 LOC106583145 other upstream 1138870 60699279 ~ 60822525 (-)
G631740 NA other upstream 1591083 61190708 ~ 61191045 (-)

Expression


Co-expression Network