rft1 (rft1)


Basic Information

Item Value
gene id rft1
gene name rft1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 60075464 ~ 60101858 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609957.2
ACACGTTCTGGTGACGTTGTAGTGACTTTCCATGTGTACGGAAGTTGATAGCATGAAATCTCTAAAGCTGTATGTAGTCAGGTCTGGTCATAcgatccaccagaaaagacaaatGGCACAAAAATTAGTACAGATTCATACTTCATAACGCACTTACTGTCCGTATCTGTGAGTCTGCTCCTTTTCACGGTGCAGTTTCTGGAGAAGCCTTGTCACAAGCCTCAAAGGAAgagggctagctagctagctgtacgATGAGTTCCCAAGATATGTTGAAGAATGCCTCCACTCTCGCGTCATACAATGTCTTGCTTCAGGTCATGTTTCGTGTGCTCACCTTTTTGCTGAACGCATTCACACTGCGCTTTGTGTCCAAAGAGCTGATTGGCGTTGTCAACGTCAGGTTGACACTGCTGTACTCCACGCTGGTCTTCTTGTCCAGAGAGGCCTTCAGGAGAGCCTGTTTGAGTGGCGGAACAGATCACAACTGGAGACAAGTCATCAACCTGCTATGGCTGACGTTGCCACTGGGTGTACTATGGGCATctctccttgtgtgtgtgtggctgtggctCCTGGAGGTTCCGGATCCCCTGACTATCCCCCACTACGGCCCCGCTGTGGGGCTCTTTGCCCTGGCCGCACtgcaggagctgctggctgagccTCTCTGGGTCCTGGCTCAGGCCCACATGTTTGTCAGGCTGAAGGTGGTTGCTGAGAGCCTGGCCATGGTGGCTAAGTGTGTTCTGACAGTGGTGCTGGTGGTCTCTGCTCCTCAGTGGGGGCTCTACATATTCTCTGCTGCTCAGCTGGTGTACACAGGGTTCCTGGTGCTGTGCTACTTTGTCTACTTCCTGCGTTTCCTGGGCTCTGGGGAGGCCAACAGGAAGTACTTCCCCCTGCAGTGTGTGGCAGACCTGCTGCCCTCCAGTGTTGAAGGAGAGcctGTGATTGACTGGACGTTGGCCAGGCTGACGTGGAGCTTCTTCAAGCAATCCTTTCTGAAGCAGATCCTGACGGAGGGAGAGCGTTATGTCATGACCTTCCTCAATGTGCTGAGCTTCGGGGAGCAGGGCGTGTACGACATCGTCAACAACCTGGGCTCAATGGTTGCCCGTTTCATCTTCCTGCCCATCGAGGAGAGCTTCTACGTCTTCTTTGCCAAAGTCCTGGAGAGGGGGCGGGACGTCAGGCAGCAGAAACAGGAGGAGGTTGCCATAGCAGCTGAAGTTCTGGAGTGTCTGCTGAAGCTGGTGCTTGTGATTGGTCTGATCATCACAGTGTTTGGTTACGCCTACTCCCACCTGGCTCTGGACATCTATGGGGGATCTCTACTGAGCAGTGGTGCAGGGCCCAGTCTGTTGCGATGCTACAGCTCCTATGTGCTCCTACTGGCCATTAATGGAATAACTGAGTGCTTTGTCTTTGCTGCCATGAGCAAGGAAGAGGTTGACAGGTATAACCTGGTGATGTTGGCTCTGTCTATCTCCTTCCTGCTCCTGTCTTACATGCTGACGTGGTGGGCAGGGGGCATTGGCTTCATCCTGGCTAACTGTCTGAACATGGGCCTGCGTATCCTTCACAGCCTGTTCTACATCCACCGCTACTTCCTGTTAAGCCAGTGGACGCCTCTGCGCGGCCTGAGGCCCTCCCCTCTTCTGCTGCTAGCTCTGGCTCTCAGTGCAGTCCTCACTGCTCTCTCTGAGGGTGTGTTCTGTTGTGACGGAGGATGGTTACTAAGGCTGGTTCACATCGCCGTGGGAGCCGGGTGTCTACTGGGTGTACTTGTCACTGTCCTTCTCACAGAGAcaaaacttgttcagtttgttcgGACTCAGCTCTTACCTCGCTATGGGAAGAAACACACCTAAACCTGCCCAGCAGAGGAGTAACCTGCCAActataatgagagagagagagacaggataatCCGAATGGCAGAAGGATACATAGATCTGAACACAGTGACTTGGAGGGGAATGTGGAAACAGCTGCAATCCTATGTGACCCTGTCATGGACTGAGGGTGAAGTTGGAATGAGCAGCTCACTGgccaaaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacagtaaGGTCTAAAAATATTGGCaacattgataaagatgagcaaaaaacactgtataaaataaatacatacaaatac
>XR_002474201.2
ACACGTTCTGGTGACGTTGTAGTGACTTTCCATGTGTACGGAAGTTGATAGCATGAAATCTCTAAAGCTGTATGTAGTCAGGTCTGGTCATAcgatccaccagaaaagacaaatGGCACAAAAATTAGTACAGATTCATACTTCATAACGCACTTACTGTCCGTATCTGTGAGTCTGCTCCTTTTCACGGTGCAGTTTCTGGAGAAGCCTTGTCACAAGCCTCAAAGGAAgagggctagctagctagctgtacgATGAGTTCCCAAGATATGTTGAAGAATGCCTCCACTCTCGCGTCATACAATGTCTTGCTTCAGGTCATGTTTCGTGTGCTCACCTTTTTGCTGAACGCATTCACACTGCGCTTTGTGTCCAAAGAGCTGATTGGCGTTGTCAACGTCAGGTTGACACTGCTGTACTCCACGCTGGTCTTCTTGTCCAGAGAGGCCTTCAGGAGAGCCTGTTTGAGTGGCGGAACAGATCACAACTGGAGACAAGTCATCAACCTGCTATGGCTGACGTTGCCACTGGGTGTACTATGGGCATctctccttgtgtgtgtgtggctgtggctCCTGGAGGTTCCGGATCCCCTGACTATCCCCCACTACGGCCCCGCTGTGGGGCTCTTTGCCCTGGCCGCACtgcaggagctgctggctgagccTCTCTGGGTCCTGGCTCAGGCCCACATGTTTGTCAGGCTGAAGGTGGTTGCTGAGAGCCTGGCCATGGTGGCTAAGTGTGTTCTGACAGTGGTGCTGGTGGTCTCTGCTCCTCAGTGGGGGCTCTACATATTCTCTGCTGCTCAGCTGGTGTACACAGGGTTCCTGGTGCTGTGCTACTTTGTCTACTTCCTGCGTTTCCTGGGCTCTGGGGAGGCCAACAGGAAGTACTTCCCCCTGCAGTGTGTGGCAGACCTGCTGCCCTCCAGTGTTGAAGGAGAGcctGTGATTGACTGGACGTTGGCCAGGCTGACGTGGAGCTTCTTCAAGCAATCCTTTCTGAAGCAGATCCTGACGGAGGGAGAGCGTTATGTCATGACCTTCCTCAATGTGCTGAGCTTCGGGGAGCAGGGCGTGTACGACATCGTCAACAACCTGGGCTCAATGGTTGCCCGTTTCATCTTCCTGCCCATCGAGGAGAGCTTCTACGTCTTCTTTGCCAAAGTCCTGGAGAGGGGGCGGGACGTCAGGCAGCAGAAACAGGAGGAGGTTGCCATAGCAGCTGAAGTTCTGGAGTGTCTGCTGAAGCTGGTGCTTGTGATTGGTCTGATCATCACAGTGTTTGGTTACGCCTACTCCCACCTGGCTCTGGACATCTATGGGGGATCTCTACTGAGCAGTGGTGCAGGGCCCAGTCTGTTGCGATGCTACAGCTCCTATGTGCTCCTACTGGCCATTAATGGAATAACTGAGTGCTTTGTCTTTGCTGCCATGAGCAAGGAAGAGGTTGACAGGTATAACCTGGTGATGTTGGCTCTGTCTATCTCCTTCCTGCTCCTGTCTTACATGCTGACGTGGTGGGCAGGGGGCATTGGCTTCATCCTGGCTAACTGTCTGAACATGGGCCTGCGTATCCTTCACAGCCTGTTCTACATCCACCGCTACTTCCTGTTAAGCCAGTGGACGCCTCTGCGCGGCCTGAGGCCCTCCCCTCTTCTGCTGCTAGCTCTGGCTCTCAGTGCAGTCCTCACTGCTCTCTCTGAGGGTGTGTTCTGTTGTGACGGAGGATGGTTACTAAGGCTGGTTCACATCGCCGTGGGAGCCGGGTGTCTACTGGGTGTACTTGTCACTGTCCTTCTCACAGAGAcaaaacttgttcagtttgttcgGACTCAGCTCTTACCTCGCTATGGGAAGAAACACACCTAAACCTGCCCAGCAGAGGAGTAACCTGCCAActataatgagagagagagagacaggataatCCGAATGGCAGAAGGATACATAGATCTGAACACAGTGACTTGGAGGGGAATGTGGAAACAGCTGCAATCCTATGTGACCCTGTCATGGACTGAGGGTGAAGTTGGAATGAGCAGCTCACTGgccaaaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
rft1 Predicted to be involved in glycolipid translocation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation In. Orthologous to human RFT1 (RFT1 homolog).

NR:

description
protein RFT1 homolog

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005319 lipid transporter activity molecular_function

KEGG:

id description
K06316 RFT1; oligosaccharide translocation protein RFT1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609957.2 False 2175 mRNA 0.52 10 60075464 60083008
XR_002474201.2 True 2113 mRNA 0.53 11 60075464 60101858

Neighbor

gene id symbol gene type direction distance location
LOC110528134 LOC106583214 coding upstream 313 60045927 ~ 60075151 (+)
LOC110528133 LOC106583215 coding upstream 37470 59994088 ~ 60037994 (+)
LOC110528132 NA coding upstream 128882 59937320 ~ 59946582 (+)
LOC110528131 ccdc174 coding upstream 140971 59930706 ~ 59934493 (+)
LOC118965358 NA coding upstream 238748 59832723 ~ 59838376 (+)
mustn1a NA coding downstream 5433 60107071 ~ 60109290 (+)
eefsec LOC106583209 coding downstream 18569 60120427 ~ 60144066 (+)
LOC110528142 LOC106583206 coding downstream 236941 60338799 ~ 60355957 (+)
arpc4 LOC103358720 coding downstream 278825 60380683 ~ 60391541 (+)
LOC118965307 NA coding downstream 461735 60563593 ~ 60565240 (+)
G630348 NA non-coding upstream 57545 60017644 ~ 60017919 (+)
G630342 NA non-coding upstream 68853 60006403 ~ 60006611 (+)
G630340 NA non-coding upstream 70911 60004097 ~ 60004553 (+)
G630280 LOC106583155 non-coding upstream 125214 59949266 ~ 59950250 (+)
G630279 NA non-coding upstream 126385 59948859 ~ 59949079 (+)
G630326 NA non-coding downstream 13770 60115628 ~ 60116293 (+)
G630385 NA non-coding downstream 34730 60136588 ~ 60137007 (+)
G630453 LOC106583208 non-coding downstream 186851 60288709 ~ 60293376 (+)
G630500 NA non-coding downstream 268073 60369931 ~ 60370320 (+)
G630501 NA non-coding downstream 269686 60371544 ~ 60421878 (+)
G630206 NA other upstream 157913 59913345 ~ 59917551 (+)
LOC110528122 LOC106583221 other upstream 367411 59705922 ~ 59712261 (+)
G629679 NA other upstream 390277 59684872 ~ 59685187 (+)
G629678 NA other upstream 390701 59684331 ~ 59684763 (+)
LOC110528099 LOC106583069 other upstream 990735 59068637 ~ 59084729 (+)
G630327 NA other downstream 45959 60147817 ~ 60148381 (+)
G630516 NA other downstream 367073 60468931 ~ 60483057 (+)
G630515 uroc1 other downstream 390419 60492277 ~ 60496429 (+)
G631568 gpx1 other downstream 1133620 61235478 ~ 61251702 (+)

Expression


Co-expression Network