ruvbl1 (ruvb1)


Basic Information

Item Value
gene id ruvbl1
gene name ruvb1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 60109874 ~ 60122317 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983679.1
AAAATGAACTTTTGTGTTATTTCCTTCAACTTCCTTGGTAACCCACATGGAAACAGTTCTTATCATACCACACTGAAACAGATCgcatctgtttgttttgttttaccgCGCCAATTCTAAATGTGAATAAATAACGATCAGGAAGGGAGCATTTTTGTTTGCATTTGTTACTTTATTATAAGACGTTCATAAAATACACAGCCATGAAGATCGAGGAAGTCAAAAGCACCACGAAAACCCAGCGCATCGCGTCTCACAGTCATGTGAAAGGACTCGGGCTAGACGATGCCGGGAACGCAAAGCAAAATGCGTCAGGTCTTGTTGGACAGGAGACCGCAAGAGAGGCTTGTGGTATCATTGTGGAACTGATCCGTTCAAAGAAGATGTCGGGAAGGGCAGTTTTACTTGCTGGACCTCCCGGTACAGGAAAGACCGCCTTGGCTTTGGCTATGGCACAGGAGCTCGGCAACAAGGTGCCCTTCTGCCCCATGGTGGGCAGTGAGGTCTACTCTTCTGAGATCAAGAAAACAGAGGTGCTAATGGAGAACTTCAGGAGGGCCATAGGGTTACGTATTAAGGAGACCAAGGAGGTGTATGAGGGGGAGGTCACAGAGCTGACCCCCTGTGAGACAGAGAATCCCATGGGTGGTTACGGGAAGACCATCAGCCACGTCATCATCGGACTGAAGACCGGCAAGGGCACCAAGCAGCTCAAGCTGGACCCCAGTATTTATGAGAGCCTGCAGAAGGAGCGTGTGGAAGCGGGAGACGTCATCTACATTGAAGCAAACAGTGGCGCCGTCAAGAGACAAGGTCGGTGTGACACATTTGCCACAGAGTTTGACCTGGAGGCTGAGGAGTACGTGCCGCTGCCTAAGGGGGACGTCCACAAGAAGAAAGAGATTATCCAAGACGTCACGCTACACGACCTGGATATTGCCAATGCtagaccacagGGAGGTCAAGATATCCTGTCTATGATGGGACAGCTGATGAAGCCCAAGAAGACCGAGATCACAGACAAGCTGCGAGCTGAGATCAACAAGGTGGTAAACCGCTACATTGACCAGGGTGTGGCTGAGCTGGTCCCTGGGGTGCTGTTTGTGGACGAGGTGCACATGCTGGACATCGAATGTTTCACCTACCTGCACCGAGCTCTGGAGAGCACCATCGCACCCATCGTAGTATTCGCCTCCAACAGGGGCAACTGCCTCAtcagGGGGACAGAGGACATCAGCTCTCCTCATGGCATTCCCCTGGACCTGCTGGACCGAGTCATGATCATCCGCACCATGCTCTACACACCGCAGGAGAtgaagcagaTCATTAAGATTCGTGCTCAGACCGAGGGGATCAACATCAGTGAGGAGGCCCTCAGTCACCTGGGAGAGATCGGAACCAAGACCACACTCCGgtATGCGGCTCAGCTGCTGACCCCAGCCAGTCTGTTAGGCAGAGTCCAGgggaaggagggagtagagagggagcaGGTGGAGGAGATCAACGAACTCTTCTACGATGCCAAGTCCTCCGCTAAGATCCTCCAGGACCAGCAGCACAAGTACATGAAATAAAGAACTATCGTCCactccctccacccttctctacCTCCCTTCATCCTCACTTTCTACCACAAGGCATCAAATGTCTGTAAACCCTGacagtctctttttctctcctcgtTCTCCTTCATGTAAAGTTCATCCTGCTCGTTCTTGTTTCTCTCATTCCAGCCTTCCTCTCATCCTTTTGTTCTGAGCCCCCATCAAGCTGCCCCATCTGTGCATCATCCACTGTAGTAGCTTGTTACGTTCAGATAAATACATTGTTTTAAAGGTTATTTGCGTgttaataaaattagattttttcaATAAAACTGAAAACTTGA
>XM_036983680.1
gttacgcaaatgcagtaagccaagGCTTGTGGTATCATTGTGGAACTGATCCGTTCAAAGAAGATGTCGGGAAGGGCAGTTTTACTTGCTGGACCTCCCGGTACAGGAAAGACCGCCTTGGCTTTGGCTATGGCACAGGAGCTCGGCAACAAGGTGCCCTTCTGCCCCATGGTGGGCAGTGAGGTCTACTCTTCTGAGATCAAGAAAACAGAGGTGCTAATGGAGAACTTCAGGAGGGCCATAGGGTTACGTATTAAGGAGACCAAGGAGGTGTATGAGGGGGAGGTCACAGAGCTGACCCCCTGTGAGACAGAGAATCCCATGGGTGGTTACGGGAAGACCATCAGCCACGTCATCATCGGACTGAAGACCGGCAAGGGCACCAAGCAGCTCAAGCTGGACCCCAGTATTTATGAGAGCCTGCAGAAGGAGCGTGTGGAAGCGGGAGACGTCATCTACATTGAAGCAAACAGTGGCGCCGTCAAGAGACAAGGTCGGTGTGACACATTTGCCACAGAGTTTGACCTGGAGGCTGAGGAGTACGTGCCGCTGCCTAAGGGGGACGTCCACAAGAAGAAAGAGATTATCCAAGACGTCACGCTACACGACCTGGATATTGCCAATGCtagaccacagGGAGGTCAAGATATCCTGTCTATGATGGGACAGCTGATGAAGCCCAAGAAGACCGAGATCACAGACAAGCTGCGAGCTGAGATCAACAAGGTGGTAAACCGCTACATTGACCAGGGTGTGGCTGAGCTGGTCCCTGGGGTGCTGTTTGTGGACGAGGTGCACATGCTGGACATCGAATGTTTCACCTACCTGCACCGAGCTCTGGAGAGCACCATCGCACCCATCGTAGTATTCGCCTCCAACAGGGGCAACTGCCTCAtcagGGGGACAGAGGACATCAGCTCTCCTCATGGCATTCCCCTGGACCTGCTGGACCGAGTCATGATCATCCGCACCATGCTCTACACACCGCAGGAGAtgaagcagaTCATTAAGATTCGTGCTCAGACCGAGGGGATCAACATCAGTGAGGAGGCCCTCAGTCACCTGGGAGAGATCGGAACCAAGACCACACTCCGgtATGCGGCTCAGCTGCTGACCCCAGCCAGTCTGTTAGGCAGAGTCCAGgggaaggagggagtagagagggagcaGGTGGAGGAGATCAACGAACTCTTCTACGATGCCAAGTCCTCCGCTAAGATCCTCCAGGACCAGCAGCACAAGTACATGAAATAAAGAACTATCGTCCactccctccacccttctctacCTCCCTTCATCCTCACTTTCTACCACAAGGCATCAAATGTCTGTAAACCCTGacagtctctttttctctcctcgtTCTCCTTCATGTAAAGTTCATCCTGCTCGTTCTTGTTTCTCTCATTCCAGCCTTCCTCTCATCCTTTTGTTCTGAGCCCCCATCAAGCTGCCCCATCTGTGCATCATCCACTGTAGTAGCTTGTTACGTTCAGATAAATACATTGTTTTAAAGGTTATTTGCGTgttaataaaattagattttttcaATAAAACTGAAAACTTGA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0005524 ATP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983679.1 False 1888 mRNA 0.50 11 60109874 60120275
XM_036983680.1 True 1568 mRNA 0.52 11 60109874 60122317

Neighbor

gene id symbol gene type direction distance location
LOC110528128 LOC106583146 coding downstream 214661 59890438 ~ 59895213 (-)
LOC110528124 LOC106565535 coding downstream 380461 59726412 ~ 59729413 (-)
LOC110528120 lmbr1l coding downstream 415753 59672674 ~ 59694121 (-)
LOC110528119 rhebl1 coding downstream 438307 59667401 ~ 59671567 (-)
LOC110528118 prkag1 coding downstream 445660 59656971 ~ 59664214 (-)
LOC110528140 LOC106583208 coding upstream 160327 60282644 ~ 60295290 (-)
LOC110528141 LOC106583207 coding upstream 208712 60331029 ~ 60336416 (-)
LOC110528144 LOC106583201 coding upstream 273647 60395964 ~ 60458245 (-)
si:dkey-197j19.6 LOC106583152 coding upstream 336193 60458510 ~ 60471468 (-)
LOC110528145 LOC105017320 coding upstream 356371 60478688 ~ 60487941 (-)
G630748 NA non-coding downstream 3737 60101948 ~ 60106137 (-)
G630718 NA non-coding downstream 44943 60062964 ~ 60064931 (-)
G630713 NA non-coding downstream 96381 60013247 ~ 60013493 (-)
G630712 NA non-coding downstream 99495 60010071 ~ 60010379 (-)
G630708 NA non-coding downstream 105902 60003768 ~ 60003972 (-)
G630774 NA non-coding upstream 24633 60146950 ~ 60147298 (-)
G630775 NA non-coding upstream 25173 60147490 ~ 60147700 (-)
G630776 NA non-coding upstream 27698 60150015 ~ 60150330 (-)
G630788 NA non-coding upstream 54261 60176578 ~ 60239327 (-)
G630794 NA non-coding upstream 69010 60191327 ~ 60191837 (-)
G630747 NA other downstream 26017 60083046 ~ 60083857 (-)
G630227 NA other downstream 192323 59915979 ~ 59917551 (-)
G630132 NA other downstream 357283 59747450 ~ 59752591 (-)
sfrs3 sfrs3 other downstream 1396300 58707572 ~ 58713630 (-)
LOC110528083 LOC106583085 other downstream 1414107 58691817 ~ 58695856 (-)
LOC110528989 LOC106583145 other upstream 616178 60699279 ~ 60822525 (-)
G631740 NA other upstream 1068391 61190708 ~ 61191045 (-)
G631687 emc3 other upstream 1075690 61198007 ~ 61199438 (-)
G632459 NA other upstream 1568931 61691248 ~ 61691644 (-)
G632994 LOC106583176 other upstream 2098955 62221272 ~ 62222445 (-)

Expression


Co-expression Network