eefsec (LOC106583209)


Basic Information

Item Value
gene id eefsec
gene name LOC106583209
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 60120427 ~ 60144066 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609959.2
AACTAGTACATCATTTGAGATTGATTCCTGCCTTTGTGATTGCATTCCATCGCCTACACTCTCTTATCAAAAAGTTTGTTTAATAAATGTAATTCGTTTTGAGTTCTAAACGGATATTTTCTTCACACCTCATGATTTTGTAGCCTCTACTTGTGAGAGGGAGTAAAACGTTACTCACACTGGCATAATTTCCAGAGGACTGTTTTTACTGATACGCAGGAAGAAAAGTTTTGTGTAGCTCGACAGCTAACGTTTGTGTTTAGTTACCTTTATTTCATCAAACATATGAATTAATTGTAACGTAAGGAGTTTAATGTATGAGTTTATTGAATGAATATTAGTTTATCGTAAATGTTGTCAATCGTGTTGTGTCATTAACTTACTGAACGTAACTACAGTTCAAGGCACAGCCAGTAACGCTAACTGCTGAGGTTGCGAAAGGAgcagatagctagctaactaccagTCATGGCAGACTCGAGCAACAACCACCCGAAGACATTAAATTTTAATGTGGGGGTACTTGGGCATGTCGACAGCGGGAAGACATCGCTTGCCAGGGCGCTCAGCAGCACAGCGTCCACGGCTGCCTTTGACAAGAACCCCCAGTCCCGAGAGAGAGGCATCACTCTGGATCTCGGCTTCTCCTCCTTCAACGTGGACCTCCCCGAGCAGCTGCGGGAGGACCCCGGGGGCCACGGCTACGACAACCTGCAGTTCACGCTGGTGGACTGTCCTGGACACGCGTCCCTCATTCGCACCATCATTGGGGgggctCAAATCATAGACTTGATGATGCTGGTGGTAGACGTGGTGAAGGGGATCCAGACCCAGACAGCAGAGTGTCTGCTGATAGGAGAGCTGACCTGCCCCCGCATGGTGGTCATTCTCAACAAGACTGACCTGCTGCCGCCCAACAAGAGACAGACCGCCATCGACAAGATGACCAAGAGACTGCACAAGACACTGGagaacaccagATTTAAAGACTGTCCTGTGATTGCCTTGTCAGCAAAGCCTGGGGGTCCTGAGGCCCCTGAAACAGAGGAGCCCCATGGAGTGCCTGAGTTAATAGAGttGTTGAAGAGCCAGACGTACCTCCCTCACAGAGATCCGGGGGGAGCTCTGCTGATGGCTGTGGACCACTGCTTCTCCATCCGTGGTCAGGGCACAGTCATGACCGGAACCATCCTACAGGGGGCGCTGGCTGTCAATGACACTGTGGAGATCCCTGCGCTCAAGGTGACCAAGAAAGTGAAGTCAGTTCAGATGTTCCGGCGGCCGGTGACCGGGGCCATGCAGGGTGACCGGGTGGGCGTGTGTGTGACCCAGTTTGACCCTAAACTGCTAGAACGGGGGGTGGTGTGTACCCCTGGTTCCCTACACACCCTCCACGCAGCCATCATCTCTGTCAGAAAGATTGGCTACTTCAAGGGTTCCCTGGCCACCCGTGCCAAGTTCCACATCACCGTGGGACATGAGACTGTCATGGCCAGGGTCACCTTCTTCGGTCTGCCCCCTGGAGAGACCCACCAGGCCTCCACCACGGACCCCCAGCTACCCACCTCAGACCCCCACGCCTCTGAGCCAGACCTTAGACCCCTGGACACACCCTTCTCTTTTGACCGGGAGTACTTCCACCAGGATGAGTATGTGATTGGCCAACGGGAGGCCGGCGGGGCGGGACAAGACCCGGAGCAGTGGGCGCTGCTGGAGTTTGAGCATCCGGTCACATGTCCCACTCTTTGCCTAGTGATTGGCTCCAAGCTGGATACAGACATTCACGCCAACGTGTGCCGACTGGCGTTCCAGGGGCGTCTGCTGGAGGGTTTTGAGGAGAAGAGCTACTCTGAGACTACACTACTCAGACTACGTATCTACAAGACCAAACACAAGGAGGGACAGGTGGAGAGGGTGACAGACGACTACACTGTGATTGGCCGAAATCTCTTCAAGAAGGAGACCAACCTGCAGTTGTTTGTGGGGTTAAAGGTCACGCTGTCGACCGGCGAGGAGGGGGTCATCGAGGGCGGCTTCGGACAGAGCGGGAAGTTTAAGATCCGGGTGCCAGAGGGTCTCAGTCTAGAGACTAagcagctcctctcctcctctgccaagAAGAGAGTTAAGGGTGGTGCTAAGGGGGAACCAGCCAAAGAGGATGATGCCAAGACAGACTCTCAGCCAATCTGCATCAACCTCCGATTCAAGAGATACGTCTTTGACCCCCACAAGAAGATGGTTCAGAGCTGACCTCTGCAGCAGCTATAGGATGATACCTGTGATGTCgtgtaaaaacaaaaatgttgCTTAAAAGCTGATCACCGTTCATGGGGAAAGTATTGCTCACTATattttcaatgcatttttctGCGATCGTCACagccgtctaaggcactgcatctcagtgcaagaagcgtcactacagtccctggttcgattacaggctgtatcacatccggacgtgattgggagtcccatcgggctgctcacaattggcc

Function

NR:

description
selenocysteine-specific elongation factor

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K03833 selB, EEFSEC; selenocysteine-specific elongation factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609959.2 True 2501 mRNA 0.52 7 60120427 60144066

Neighbor

gene id symbol gene type direction distance location
mustn1a NA coding upstream 11137 60107071 ~ 60109290 (+)
LOC110528987 LOC106583211 coding upstream 17916 60084526 ~ 60102511 (+)
rft1 rft1 coding upstream 18569 60075464 ~ 60101858 (+)
LOC110528134 LOC106583214 coding upstream 45276 60045927 ~ 60075151 (+)
LOC110528133 LOC106583215 coding upstream 82433 59994088 ~ 60037994 (+)
LOC110528142 LOC106583206 coding downstream 194733 60338799 ~ 60355957 (+)
arpc4 LOC103358720 coding downstream 236617 60380683 ~ 60391541 (+)
LOC118965307 NA coding downstream 419527 60563593 ~ 60565240 (+)
LOC110528988 LOC106583198 coding downstream 487546 60631612 ~ 60635398 (+)
pob pob coding downstream 1052652 61196718 ~ 61200460 (+)
G630326 NA non-coding upstream 4134 60115628 ~ 60116293 (+)
G630348 NA non-coding upstream 102508 60017644 ~ 60017919 (+)
G630342 NA non-coding upstream 113816 60006403 ~ 60006611 (+)
G630340 NA non-coding upstream 115874 60004097 ~ 60004553 (+)
G630280 LOC106583155 non-coding upstream 170177 59949266 ~ 59950250 (+)
G630453 LOC106583208 non-coding downstream 144643 60288709 ~ 60293376 (+)
G630500 NA non-coding downstream 225865 60369931 ~ 60370320 (+)
G630501 NA non-coding downstream 227478 60371544 ~ 60421878 (+)
G630513 NA non-coding downstream 245518 60389584 ~ 60578290 (+)
G630523 NA non-coding downstream 251924 60395990 ~ 60397394 (+)
G630206 NA other upstream 202876 59913345 ~ 59917551 (+)
LOC110528122 LOC106583221 other upstream 412374 59705922 ~ 59712261 (+)
G629679 NA other upstream 435240 59684872 ~ 59685187 (+)
G629678 NA other upstream 435664 59684331 ~ 59684763 (+)
G630327 NA other downstream 3751 60147817 ~ 60148381 (+)
G630516 NA other downstream 324865 60468931 ~ 60483057 (+)
G630515 uroc1 other downstream 348211 60492277 ~ 60496429 (+)
G631568 gpx1 other downstream 1091412 61235478 ~ 61251702 (+)
LOC110528160 LOC106583186 other downstream 1241966 61385568 ~ 61470736 (+)

Expression


Co-expression Network