LOC110528142 (LOC106583206)


Basic Information

Item Value
gene id LOC110528142
gene name LOC106583206
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 60338799 ~ 60355957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609963.2
CGCAAGACTAGTTGTTttggaggaagtgagagagaaaaaatcagTCGCGAAAAGAAACCAGGGCAAAAAACAAGACAACAAAGTCGAGACAAAAATTATATAGCTAAATATACGTATTTACACTAATGTGAAGGGAATCTGAATATCAAAGAGAGATAAGCATCTCAAGCTGCAGAAACCAACTTGATACATGAACATTTTAACTGGGTAATCTAGCTAACGCATTAACTAGCTATCTATTTTGCTCGTGACAGTTATTCAAATTCAACAAGAGGCTCACCTGAGTCGATAAAGCGGTCTGGTGTGTTGGAAGTTGAAGACACGACAGAATGACATCCAGGAAGAAAGTGCTCCTGAAAGTCATCATCCTTGGGGATTCTGGagTTGGGAAGACCTCCCTGATGAACCAGTATGTGAATAGGAAGTTCAGTAACCAGTACAAAGCCACAATAGGAGCTGACTTCCTGACCAAGGAGGTGATGGTGGACGATCGGCTCGTCACAATGCAGATCTGGGACACGGCAGGGCAGGAGAGGTTCCAGTCTCTGGGTGTGGCGTTCTACCGCGGGGCAGACTGCTGTGTGCTGGTGTTTGATGTGACTGCGCCTAACACCTTCAAGACTCTAGACAGCTGGAGGGACGAGTTCCTCATCCAGGCCAGTCCCAGGGACCCCGAGAACTTCCCCTTTGTGGTGCTAGGCAACAAGATCGACCTGGAGAACAGACAGGTGACGACCAAGCGAGCTCAGGCATGGTGTCAGAGTAAGGACAACATCCCCTACTTTGAGACCAGTGCTAAGGAGGCCATCAACGTAGAGCAGGCCTTCCAGACCATCGCACGCAATGCCCTCAAACAGGAGACGGAGGTGGAGCTGTATAATGAATTCCCGGAACCCATCAAGCTGGACAGAAATGACCGAGCAAAGCCTTCAGCAGAGGCCTGCAGCTGCTGAGGCACAACATGGACTATCTTCTGTCTGGCTTTCAGGAACAaaccccttctctctttctaaaGGAAAGGACAGCCTCTCTGGTTTCTGCATGCACCCATGTCACATTCCCCTCCCACCAGAATCCCAACGAGTGTCCAGTTATTTACATGTACTGCACATGATGGGTGTATACATACACCTTTAACACACATTCATTCACTCCCACACATACACATCTTGATGAATCCAATGCCGTTAGAGAAGAATTGGTACACCCCTGTAGACTCCACTATTACTGCCCGTTCCTGAATCCATACCATGAGTGAACCCACAGCCTGGCCCACCCTGTCTgactctgtcccctctctgtctctcacattgGGGGGTCCAGATAGAGCCATGTCCTAGGAGTGCAGTGGAGAACTCTAAAGTGATGGCTGAAGCTTCTTGACATGAGATTATGATGATGATATCTTTGTCTCATTGTCCTGAAACATTTAATCCTCTGTATTTTCTGTTCTTcataattgttttgttttgactTGAAGTTCTATATTGCCTAACTTACTGTTGACAAATAATTAGCTGTACTGTAATTTTTTGTTCGTATTGGCTGTCGATGTTAAGTCTTAAGCCAATCGGAAGCTTATACTTGGTTTTGCACTGTGGTTTTACTGATATTTTTTGTTATAAACTCTTATTTGGGCTTGACTGACAACAAGCCATTAACAACAACACTGCTCCCACCATCCTTCTCTACTACCCCCAGGAAGCCTGTTgaagctataaaaaaaaaatgcacagGTGGCTCCCTTTTGTTGGGAGTGCGCATTGGTTGGTTTAGTAGTTTATGTTGCAGGGGAAATATTCATAAGTAGGCGATGAAGAGAGAAAAGCTGACGACGCAAACACAATGGAAGACATGGAGAAAGTTCTTATTAAGATATTAATAGTCCTagaactactgctactactatgttCTATATGTCCTTTCCTTTGTCAGCCAATGTGTTTCAACACTACAATTACAGCTCTGCTCCTCTACATCTGTCCACTGTTATGCCTGTATTGTCTATACTGTATCTTCCTTTCTGCTGGTAGCTCAGGTTGGCAAGAGTTTGTTAATAAGTGCTTAATATGACtttttaacagattgtgtactaCTATTGAGTGTGGGTATAACAGGAACAGTGGGGAAAAGATGAGAGATTAAACAATTGGATGTTATTTCTATCAATCACAAAGAAACAGTCCAAGGATTTGCCCTGGTATTACTCCTCTTCTTCACGAAATAATCAGTGCTATGCCAATTCAGTTGTTGAGTATTGGGATTTCAAAAGTAATGATAATAAAAAGTAattcaatataaaaaaaaa

Function

NR:

description
PREDICTED: ras-related protein Rab-7a-like isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005770 late endosome cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07897 RAB7A; Ras-related protein Rab-7A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609963.2 True 2308 mRNA 0.44 6 60338799 60355957

Neighbor

gene id symbol gene type direction distance location
eefsec LOC106583209 coding upstream 194733 60120427 ~ 60144066 (+)
mustn1a NA coding upstream 229509 60107071 ~ 60109290 (+)
LOC110528987 LOC106583211 coding upstream 236288 60084526 ~ 60102511 (+)
rft1 rft1 coding upstream 236941 60075464 ~ 60101858 (+)
LOC110528134 LOC106583214 coding upstream 263648 60045927 ~ 60075151 (+)
arpc4 LOC103358720 coding downstream 24726 60380683 ~ 60391541 (+)
LOC118965307 NA coding downstream 207636 60563593 ~ 60565240 (+)
LOC110528988 LOC106583198 coding downstream 275655 60631612 ~ 60635398 (+)
pob pob coding downstream 840761 61196718 ~ 61200460 (+)
LOC110528158 LOC106583188 coding downstream 844930 61200887 ~ 61233404 (+)
G630453 LOC106583208 non-coding upstream 45423 60288709 ~ 60293376 (+)
G630375 NA non-coding upstream 196167 60090196 ~ 60142632 (+)
G630385 NA non-coding upstream 201792 60136588 ~ 60137007 (+)
G630326 NA non-coding upstream 222506 60115628 ~ 60116293 (+)
G630348 NA non-coding upstream 320880 60017644 ~ 60017919 (+)
G630500 NA non-coding downstream 13974 60369931 ~ 60370320 (+)
G630501 NA non-coding downstream 15587 60371544 ~ 60421878 (+)
G630513 NA non-coding downstream 33627 60389584 ~ 60578290 (+)
G630523 NA non-coding downstream 40033 60395990 ~ 60397394 (+)
G630528 LOC106583201 non-coding downstream 56582 60412539 ~ 60414116 (+)
G630327 NA other upstream 190418 60147817 ~ 60148381 (+)
G630206 NA other upstream 421248 59913345 ~ 59917551 (+)
LOC110528122 LOC106583221 other upstream 630746 59705922 ~ 59712261 (+)
G629679 NA other upstream 653612 59684872 ~ 59685187 (+)
G630516 NA other downstream 112974 60468931 ~ 60483057 (+)
G630515 uroc1 other downstream 136320 60492277 ~ 60496429 (+)
G631568 gpx1 other downstream 879521 61235478 ~ 61251702 (+)
LOC110528160 LOC106583186 other downstream 1030075 61385568 ~ 61470736 (+)
G632146 NA other downstream 1335324 61691281 ~ 61691647 (+)

Expression


Co-expression Network