arpc4 (LOC103358720)


Basic Information

Item Value
gene id arpc4
gene name LOC103358720
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 60380683 ~ 60391541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609965.2
GTACATGGTGTGTTCCGGTTAGTGCATAGGGTCATGAAAGAGCCATGACAAGTGTACTACTTCCGTCTTCTCCTCCCCAGCGGATATAGAGAAATGacaGCGACTCTGCGCCCGTACCTCAACGCTGTGCGTGCCACGCTGCAGGCCGCCCTCTGTCTGGAGAACTTCTCCTCTCAGGTGGTGGAGCGACACAACAAGCCAGAGGTGGAGGTCCGGAGCAGTAAAGAGTTGCTGCTGCAGCCAGTCATCATCAGTCGTAATGACAAGGAGAAGGTTCTTATCGAGGGCTCCATCAACTCAGTCCGAGTCAGCATCGCTGTCAAGCAGGCGGATGAGATTGAGAAGATCCTTTGCCATAAATTCATGCGCTTCATGATGATGAGAGCTGAGAACTTCTTCATCCTGAGGAGGAAACCGgtggagGGTTATGACATCAGTTTTCTCATCACCAACTTCCACACGGAGCAGATGTACAAGCACAAGCTGGTGGACTTCGTCATCCACTTCATGGAGGAGATCGACAAGGAGATCAGCGAGATGAAGTTGTCTGTCAACGCCAGGGCCCGTATCGTCGCAGAGGAGTTCCTCAAAAATTTCTAAGAAAATTCCCAAACATTCCTTACGCTGATCACGACCGTCATCATGGTTTCTGAGGGGTCCGCATCACAGGacggagaagggggaggggaaaaCATTGTGACCAGACATTCGCAATGGAAAAAAGTAAAGATGCATCAGACCAATGGGGTGTTGCCCTACGTCATTGAGGTATCCCTGTGCTCAGAAATATTGATGTTTGTACATACTTAATATTCACAGCCTCGTTTAATTTCTGCCCTTTAGAACAAAGCATTAAATCAGGGCGGGTCCTTAAAATAGAATCCTAATCAATATTAATGAGCACAGGGAAATGCATGGAGATTTCTGATAATTGAaactatttcttttttttttatataaatattatattCAGACTGTTTTGCTAAGTTTTTGTTACGACACCTGTTTCTTGTGTTAATACACACAGAGCAGACCCTATCATTGATGGAAATGATTGTGATAATAGTGCTGGCAGTGATGAATAAATCCCTTTATTGTTTGTTTGTA
>XM_036983684.1
GTACATGGTGTGTTCCGGTTAGTGCATAGGGTCATGAAAGAGCCATGACAAGTGTACTACTTCCGTCTTCTCCTCCCCAGCGGATATAGAGAAATGacaGCGACTCTGCGCCCGTACCTCAACGCTGTGCGTGCCACGCTGCAGGCCGCCCTCTGTCTGGAGAACTTCTCCTCTCAGGTGGTGGAGCGACACAACAAGCCAGAGGTGGAGGTCCGGAGCAGTAAAGAGTTGCTGCTGCAGCCAGTCATCATCAGTCGTAATGACAAGGAGAAGGTTCTTATCGAGGGCTCCATCAACTCAGTCCGAGTCAGCATCGCTGTCAAGCAGGGTTATGACATCAGTTTTCTCATCACCAACTTCCACACGGAGCAGATGTACAAGCACAAGCTGGTGGACTTCGTCATCCACTTCATGGAGGAGATCGACAAGGAGATCAGCGAGATGAAGTTGTCTGTCAACGCCAGGGCCCGTATCGTCGCAGAGGAGTTCCTCAAAAATTTCTAAGAAAATTCCCAAACATTCCTTACGCTGATCACGACCGTCATCATGGTTTCTGAGGGGTCCGCATCACAGGacggagaagggggaggggaaaaCATTGTGACCAGACATTCGCAATGGAAAAAAGTAAAGATGCATCAGACCAATGGGGTGTTGCCCTACGTCATTGAGGTATCCCTGTGCTCAGAAATATTGATGTTTGTACATACTTAATATTCACAGCCTCGTTTAATTTCTGCCCTTTAGAACAAAGCATTAAATCAGGGCGGGTCCTTAAAATAGAATCCTAATCAATATTAATGAGCACAGGGAAATGCATGGAGATTTCTGATAATTGAaactatttcttttttttttatataaatattatattCAGACTGTTTTGCTAAGTTTTTGTTACGACACCTGTTTCTTGTGTTAATACACACAGAGCAGACCCTATCATTGATGGAAATGATTGTGATAATAGTGCTGGCAGTGATGAATAAATCCCTTTATTGTTTGTTTGTA

Function

NR:

description
Actin-related protein 2/3 complex subunit 4

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609965.2 False 1107 mRNA 0.45 6 60380683 60391541
XM_036983684.1 True 1011 mRNA 0.45 5 60380683 60391541

Neighbor

gene id symbol gene type direction distance location
LOC110528142 LOC106583206 coding upstream 24726 60338799 ~ 60355957 (+)
eefsec LOC106583209 coding upstream 236617 60120427 ~ 60144066 (+)
mustn1a NA coding upstream 271393 60107071 ~ 60109290 (+)
LOC110528987 LOC106583211 coding upstream 278172 60084526 ~ 60102511 (+)
rft1 rft1 coding upstream 278825 60075464 ~ 60101858 (+)
LOC118965307 NA coding downstream 172052 60563593 ~ 60565240 (+)
LOC110528988 LOC106583198 coding downstream 240071 60631612 ~ 60635398 (+)
pob pob coding downstream 805177 61196718 ~ 61200460 (+)
LOC110528158 LOC106583188 coding downstream 809346 61200887 ~ 61233404 (+)
LOC118965359 fancd2 coding downstream 854381 61245922 ~ 61248219 (+)
G630500 NA non-coding upstream 10363 60369931 ~ 60370320 (+)
G630453 LOC106583208 non-coding upstream 87307 60288709 ~ 60293376 (+)
G630375 NA non-coding upstream 238051 60090196 ~ 60142632 (+)
G630385 NA non-coding upstream 243676 60136588 ~ 60137007 (+)
G630326 NA non-coding upstream 264390 60115628 ~ 60116293 (+)
G630523 NA non-coding downstream 4449 60395990 ~ 60397394 (+)
G630528 LOC106583201 non-coding downstream 20998 60412539 ~ 60414116 (+)
G630539 NA non-coding downstream 44546 60436087 ~ 60446429 (+)
G630557 pius non-coding downstream 108590 60500131 ~ 60555496 (+)
G631050 NA non-coding downstream 306950 60698491 ~ 60698704 (+)
G630327 NA other upstream 232302 60147817 ~ 60148381 (+)
G630206 NA other upstream 463132 59913345 ~ 59917551 (+)
LOC110528122 LOC106583221 other upstream 672630 59705922 ~ 59712261 (+)
G629679 NA other upstream 695496 59684872 ~ 59685187 (+)
G630516 NA other downstream 77390 60468931 ~ 60483057 (+)
G630515 uroc1 other downstream 100736 60492277 ~ 60496429 (+)
G631568 gpx1 other downstream 843937 61235478 ~ 61251702 (+)
LOC110528160 LOC106583186 other downstream 994491 61385568 ~ 61470736 (+)
G632146 NA other downstream 1299740 61691281 ~ 61691647 (+)

Expression


Co-expression Network