uroc1 (uroc1)


Basic Information

Item Value
gene id uroc1
gene name uroc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 60490775 ~ 60500443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983688.1
CCACAGActacagaccctttactctgatAAACAGTGGTCAACAGTGAGCTACAGAGCTGCGTGCCCATTTTTCCTGCGTTCCCAGacattgtgtgtctctctgggttTGTCTCTCCTCTGATCCTGCTTAAATCCTCCATAGTGTGACAGGACACAGTGGACAGGATGTCAAACCTGAAGGAGTTGTGTAGCGGCCTGCCTCTGGATCCCATGCCATCCAATCGGGGCCGGGACCCCAGTGTGCCACATGCACCCGTCAGGACGCCCAACCTCACtccggaggaggagaggCTAGCCCTGAGGAATGCCCTGCGCTACTTTCCCCCCTCCCACCACAACATCCTGGCTGCTGAATTCGCCCAGGAGCTCAGGCAGTATGGACACATCTACATGTACCGCTTCTGTCCCCGCATACATATGAGGGCCTACCCTATAGATCAGTACCCCTGTCGTACACGCCAAGCTGCCTCCATCATGCTCATGATCATGAACAACCTGGACCATGCAGTTGCCCAGTTTCCCCAGGAGCTGGTTACCTATGGGGGAAATGGACAGGTGTTCAGTAATTGGGCCCAGttccGCCTGGTGATGTACTACCTGAGTGAGATGACAGAGGAGCAGACTCTGGTCATGTACAGTGGTCATCCAGCGGGGCTGTTCCCCAGCCTGCCCTCCTCCCCCCGCGCTATCATTACCAACGGCATGgTCATTCCAAACTATTCCTCCAGAGAGCAGTATGAGAAGATGTTTGCTTTGGGTGTATCAATGTATGGTCAGATGACTGCTGGTAGCTACTGCTACATTGGGCCTCAGGGGATTGTCCATGGCACCATGcTGACAGTGTTGAATGCAGGGCGGAGGTATCTGGGGTCTGATGACCTGAGGGGCCGGGTGTTGGTGACATCGGGGCTGGGGGGCATGAGCGGGGCACAGGCCAAGGCTGCTGTCATCGCTGGCTGTGTGGGGGTCATTGCCGAGGTAGATGAGGTGCCCCTGAGGAAGAGACATGAGCAAGGCTGGTTAATGGAGGTCACCAGTGACATAGAACACTGCATCCAACGCATTAGAGAAGCCAAGAGATCCAAGACTCCCCTCAGCTTGGGTTACCATGGCAATGTTGTGGACTTATGGGAGCGTCTGTTGACGGAGtatgagaggacaggagagctGCTGGTGGACCTGGGCTCAGACCAGACCTCCCTCCACAACCCCTTCAGTGGAGGGTACTACCCAGCTCAGCTCAGCCTCCAACAGGCCAACCAGCTCATGGCCACAGACCCAGCACGCTTCAAAACCGTGGTCCATGAGAGcCTTTGTAGACAGGTAGCTGCCATCAACAAGCTGTCTGAGGCAGGGATGTTCTTCTGGGACTATGGAAACGCCTTCCTCCTGGAGGCCCAGAGAGCAGgagcggaggtagagaaggagggaggcggAGCGACAGAGTTCCGCTACCCATCCTATGTCCAAGACATCATGGGTGACATCTTCTCCCTGGGCTTTGGACCATTCCGCTGGGTCTGCACCTCCGGTGACCCTCATGACCTGACACTGACTGATGACATCGCCGCCACTGTCCTGGAGGAGATCAGCGCCAATGTGACTGAGCGTGTGCGACAGCAGTACAACGACAACATCCGCTGGATCCGTGAGGCCGGAAAACACAGGATGgtGGTGGGCTCCCAAGCCAGAATCCTCTACTCAGACCAGAAAGGCCGTGTGTGTATTGCCTTGGCCATCAATCAAGCTATTGCTGATAGGAGAGTTTCGGCTCCTGTGGTCATCAGTAGAGACCACCATGACGTTAGTGGAACAGACAGTCCCTTCAGAGAGACCTCCAATGTGTACGACGGCTCTGCCTTCTGTGCAGACATGGCGGTCCAGAACTTTGTAGGCGATGCATTCAGAGGAGCCACCTGGGTGTCCCTGCACAACGGTGGAGGGGTCGGCTGggGTGAGGTGATGAACGGAGGGTTTGGTCTGCTCCTGGACGGGACGGAGGAGGCAGCGAAGAGAGCCAGTCTGATGCTCAACTGGGACGTCTCTAACGGGGTGGCTCGTCGATGCTGGTCGGGGAACTCCAACGCCTATGAGACCATCCAGCGTACCATGGAGGAGCAAAGGCAGCTTCGCGTCACGATGCCCTACCCTGTGCAGGACGAAGATGTGTTAGACAGGGCCCTGCAGGGCTAGATCAGCACACTGCTCACAACACAGCTAGCTAGTCAGATGATAAAGGACACACAGAATATTCATTGTGTCAATCCACACCACCATTCACAATTCCAGATTGTCCTGAATTAAGAGCAGAACCAAGATGATCACTTGATCATGGAtgtcatacagttgaagtcggaagattacatacacttaggttg

Function

symbol description
uroc1 Predicted to enable urocanate hydratase activity. Predicted to be involved in histidine catabolic process. Predicted to act upstream of or within histidine metabolic process. Human ortholog(s) of this gene implicated in urocanase deficiency. Orthologous to human UROC1 (urocanate hydratase 1).

NR:

description
urocanate hydratase

GO: NA

KEGG:

id description
K01712 hutU, UROC1; urocanate hydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983688.1 True 2378 mRNA 0.55 19 60490775 60500443

Neighbor

gene id symbol gene type direction distance location
LOC110528145 LOC105017320 coding downstream 2834 60478688 ~ 60487941 (-)
si:dkey-197j19.6 LOC106583152 coding downstream 19307 60458510 ~ 60471468 (-)
LOC110528144 LOC106583201 coding downstream 32530 60395964 ~ 60458245 (-)
LOC110528141 LOC106583207 coding downstream 154359 60331029 ~ 60336416 (-)
LOC110528140 LOC106583208 coding downstream 195485 60282644 ~ 60295290 (-)
LOC110528150 LOC106583199 coding upstream 12129 60512572 ~ 60530678 (-)
LOC100136654 ip6k2 coding upstream 52992 60553435 ~ 60563412 (-)
trnaf-gaa-79 NA coding upstream 126786 60627229 ~ 60627301 (-)
LOC110528152 LOC106583196 coding upstream 139422 60639865 ~ 60669084 (-)
LOC110528989 LOC106583145 coding upstream 198836 60699279 ~ 60822525 (-)
G630886 NA non-coding downstream 120323 60370161 ~ 60370452 (-)
G630788 NA non-coding downstream 251448 60176578 ~ 60239327 (-)
G630794 NA non-coding downstream 298938 60191327 ~ 60191837 (-)
G630776 NA non-coding downstream 340445 60150015 ~ 60150330 (-)
G630775 NA non-coding downstream 343075 60147490 ~ 60147700 (-)
G631214 NA non-coding upstream 328943 60829386 ~ 60829648 (-)
G631238 NA non-coding upstream 346557 60847000 ~ 60847202 (-)
G631253 NA non-coding upstream 354988 60855431 ~ 60855779 (-)
G630747 NA other downstream 406918 60083046 ~ 60083857 (-)
G630227 NA other downstream 573224 59915979 ~ 59917551 (-)
G630132 NA other downstream 738184 59747450 ~ 59752591 (-)
sfrs3 sfrs3 other downstream 1777201 58707572 ~ 58713630 (-)
LOC110528083 LOC106583085 other downstream 1795008 58691817 ~ 58695856 (-)
G631740 NA other upstream 690265 61190708 ~ 61191045 (-)
G631687 emc3 other upstream 697564 61198007 ~ 61199438 (-)
G632459 NA other upstream 1190805 61691248 ~ 61691644 (-)
G632994 LOC106583176 other upstream 1720829 62221272 ~ 62222445 (-)

Expression

uroc1(uroc1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
End of interactive chart.

uroc1(uroc1) Expression in each Bioproject

Bar chart with 18 bars.
uroc1(uroc1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4000.
End of interactive chart.

Co-expression Network