LOC118965307


Basic Information

Item Value
gene id LOC118965307
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 60563593 ~ 60565240 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052624.1
ATGGATGACGTCAACGCTTCTGACAGGATGTGTAGTTATGTATAATAGCCACATTAGCGGCTATTTAGCGTTTCATTTTGGGGTgatgactacaggtgaatatattgataCAAGTTACCTTGTCTGGGAGATTTGTGCAGTTATCAATACATTActccagggctccCGGTGCCTCTGATCCCAGGACCTACACTACATCGGAGACATCGGTCTCACTCTAATCCAGCTTTCTGGAAGACAGACCAGCAGGGAAATGGACCACGGAAAAACACCCAACTTAACCAAACATCAAGTGCACTGAACTGTATGTTAGTGTActggtatgtgtgtgagtgtgcataagcgcttgtgttttggtgtgtgtctgttttgAATATTTGTGTACACCAGTGTGTGTATAagcaagtgtgtgtatgtgcatgaatgagtaggtgagtttCTGGCCTAGTCACCAGGCAGGCAGGGCTGATGGATGAGGCACAGGCCTGTGCCCAGGGACAATGGACCCGGCCGCGCTACACTGCAGGCAAGGCATTCAGCCCAGTTATGAAACACATTACTGGGCCAGACAGGCTCTAACCTCCTCCACCATTTGCTGGGCATAGAGCAATGGTCTAACAGACTCCAACATCTGTCCTGCAGGCACAGAGGGGTAGCCAGAAAAATACCAACAATCAGGCATCTATGATAAAACTGGTGCCACTGCCATTTCAACAGCATTGTTTTTCTTCACCACTACCGTTATTTTCAGCTGCTGATCATGGTATATCGCACATGACATACATCTCAAATAGCACATTTTACAGGGAGGGGGATGGACCCAAAGGAGGGctggaactagagagagagagagagagagagagctaaggaGGTTCAGTAGCACCTAGAACTTCTGCTCAGATACTGTCTGACTTTGTCCCTGACGGTAAAATCttagtaagacaaaaataatggtgttctaaAAAAGCTCCAGTTGCCAagacaacaaatacaaattctatctagtcaccgttgccctagagcacacaactAAATATATCTACCACGGcctaaacatcaacaccacaggtaacttccacaaggctATGAACACTCTAAGAGATAGGgctttctatgccatcaaaaggcaGATAAAACtcgacatcccaattaggatctagCTAAAAAATATTTCAGTTAGTTGTAGAACCAATTGCtctctatggttgtgaggtctggggtccactcaccaaccaataattcacaaaatgggacaagccCCCAATTGAGACTATACCCTTTaaatatcaaaatccagaaaagagctgttaaattttACAACCAAATAAAAGGAAGCcatccctacacattccaccacaaaaccctcacctacagagagattaacctagagAAGAATCCTTTCAGCCAGCTGgtactggggctctgttcacaaacacaaacagaccccacagaaccccaggacagcaacacaatcagacccaaccaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052624.1 True 1487 mRNA 0.45 2 60563593 60565240

Neighbor

gene id symbol gene type direction distance location
arpc4 LOC103358720 coding upstream 172052 60380683 ~ 60391541 (+)
LOC110528142 LOC106583206 coding upstream 207636 60338799 ~ 60355957 (+)
eefsec LOC106583209 coding upstream 419527 60120427 ~ 60144066 (+)
mustn1a NA coding upstream 454303 60107071 ~ 60109290 (+)
LOC110528987 LOC106583211 coding upstream 461082 60084526 ~ 60102511 (+)
LOC110528988 LOC106583198 coding downstream 66372 60631612 ~ 60635398 (+)
pob pob coding downstream 631478 61196718 ~ 61200460 (+)
LOC110528158 LOC106583188 coding downstream 635647 61200887 ~ 61233404 (+)
LOC118965359 fancd2 coding downstream 680682 61245922 ~ 61248219 (+)
LOC118965308 NA coding downstream 684853 61250093 ~ 61255427 (+)
G630557 pius non-coding upstream 8097 60500131 ~ 60555496 (+)
G630539 NA non-coding upstream 117164 60436087 ~ 60446429 (+)
G630501 NA non-coding upstream 141715 60371544 ~ 60421878 (+)
G630528 LOC106583201 non-coding upstream 149477 60412539 ~ 60414116 (+)
G630523 NA non-coding upstream 166199 60395990 ~ 60397394 (+)
G631050 NA non-coding downstream 133251 60698491 ~ 60698704 (+)
G631075 LOC106583145 non-coding downstream 171196 60736436 ~ 60736797 (+)
G631209 NA non-coding downstream 260916 60826156 ~ 60826363 (+)
G631216 NA non-coding downstream 266241 60831481 ~ 60831719 (+)
G631219 NA non-coding downstream 268858 60834098 ~ 60834621 (+)
G630515 uroc1 other upstream 67164 60492277 ~ 60496429 (+)
G630516 NA other upstream 80536 60468931 ~ 60483057 (+)
G630327 NA other upstream 415212 60147817 ~ 60148381 (+)
G630206 NA other upstream 646042 59913345 ~ 59917551 (+)
G631568 gpx1 other downstream 670238 61235478 ~ 61251702 (+)
LOC110528160 LOC106583186 other downstream 820792 61385568 ~ 61470736 (+)
G632146 NA other downstream 1126041 61691281 ~ 61691647 (+)
G632776 NA other downstream 1574276 62139516 ~ 62139991 (+)
G632809 LOC100194703 other downstream 1665275 62230515 ~ 62231349 (+)

Expression


Co-expression Network