Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110528989 |
| gene name | LOC106583145 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 60699279 ~ 60822525 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| collagen alpha-1(VII) chain-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036983693.1 | False | 10372 | mRNA | 0.58 | 121 | 60699279 | 60822524 |
| XM_036983694.1 | False | 10467 | mRNA | 0.58 | 121 | 60699279 | 60822524 |
| XM_036983695.1 | False | 10372 | mRNA | 0.58 | 121 | 60699279 | 60822524 |
| XM_036983696.1 | False | 10363 | mRNA | 0.58 | 121 | 60699279 | 60822524 |
| XM_036983698.1 | False | 10282 | mRNA | 0.58 | 120 | 60699279 | 60822524 |
| XM_036983699.1 | False | 10273 | mRNA | 0.58 | 120 | 60699279 | 60822524 |
| XM_036983697.1 | False | 10310 | mRNA | 0.58 | 120 | 60699279 | 60822525 |
| TU717567 | False | 563 | lncRNA | 0.46 | 3 | 60699480 | 60702614 |
| TU717562 | False | 924 | TUCP | 0.62 | 17 | 60738495 | 60748099 |
| TU717563 | True | 308 | lncRNA | 0.61 | 5 | 60753024 | 60755444 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110528152 | LOC106583196 | coding | downstream | 30195 | 60639865 ~ 60669084 (-) |
| trnaf-gaa-79 | NA | coding | downstream | 71978 | 60627229 ~ 60627301 (-) |
| LOC100136654 | ip6k2 | coding | downstream | 135867 | 60553435 ~ 60563412 (-) |
| LOC110528150 | LOC106583199 | coding | downstream | 168601 | 60512572 ~ 60530678 (-) |
| uroc1 | uroc1 | coding | downstream | 198836 | 60490775 ~ 60500443 (-) |
| LOC110528153 | LOC106583194 | coding | upstream | 107776 | 60930301 ~ 60933747 (-) |
| LOC110528154 | gnai2 | coding | upstream | 123539 | 60946064 ~ 61041619 (-) |
| LOC110528155 | LOC106583192 | coding | upstream | 232864 | 61055389 ~ 61128517 (-) |
| LOC118965385 | NA | coding | upstream | 334193 | 61156718 ~ 61158861 (-) |
| LOC110528156 | NA | coding | upstream | 336415 | 61158940 ~ 61164665 (-) |
| G630902 | NA | non-coding | downstream | 123803 | 60488050 ~ 60575476 (-) |
| G630886 | NA | non-coding | downstream | 328827 | 60370161 ~ 60370452 (-) |
| G630788 | NA | non-coding | downstream | 459952 | 60176578 ~ 60239327 (-) |
| G630794 | NA | non-coding | downstream | 507442 | 60191327 ~ 60191837 (-) |
| G631214 | NA | non-coding | upstream | 6861 | 60829386 ~ 60829648 (-) |
| G631238 | NA | non-coding | upstream | 24475 | 60847000 ~ 60847202 (-) |
| G631253 | NA | non-coding | upstream | 32906 | 60855431 ~ 60855779 (-) |
| G631321 | NA | non-coding | upstream | 63274 | 60885799 ~ 60888175 (-) |
| G631414 | NA | non-coding | upstream | 122596 | 60945121 ~ 60945582 (-) |
| G630747 | NA | other | downstream | 615422 | 60083046 ~ 60083857 (-) |
| G630227 | NA | other | downstream | 781728 | 59915979 ~ 59917551 (-) |
| G630132 | NA | other | downstream | 946688 | 59747450 ~ 59752591 (-) |
| sfrs3 | sfrs3 | other | downstream | 1985705 | 58707572 ~ 58713630 (-) |
| LOC110528083 | LOC106583085 | other | downstream | 2003512 | 58691817 ~ 58695856 (-) |
| G631740 | NA | other | upstream | 368183 | 61190708 ~ 61191045 (-) |
| G631687 | emc3 | other | upstream | 375482 | 61198007 ~ 61199438 (-) |
| G632459 | NA | other | upstream | 868723 | 61691248 ~ 61691644 (-) |
| G632994 | LOC106583176 | other | upstream | 1398747 | 62221272 ~ 62222445 (-) |
| LOC118965309 | LOC106583169 | other | upstream | 1685694 | 62506239 ~ 62520518 (-) |
