LOC118965308


Basic Information

Item Value
gene id LOC118965308
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 61250093 ~ 61255427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052625.1
aatgagaacttgttctcaactagcctacctggttaaataaaggtgaaataaaaaaataaaaaaataaactgtgGCTGAGAGAGGAGGGCACCAGGCTACAAACAGGGAGCAGACTGCAACCCTAGCCCGGCAGTTCCTGTGCCAGGAGTTGGTGACTACGAGCGGAGACCGAGAGAACCAAAGAGGACCCAAAGACAACGAGACTCTCCAAACTCTCCTCAGGCAGTGGAGGAGATAGCTGGAGAGGGCATCCCTGAGATCCTCAACGCAGTAGCCAAAGACGCCAGCTCTAGAACTTGGCCCACTCTCAACAGGGTGAGGAGATCCTCTCTCAACGCTCAAAGGGGAGTTATGAAGAGGAAGACTCCCTGCTGCCTCAGGAGCAGTCAGAAGATGAGGCCCAAGAGAGTGACTCTGAGGAGAGGAAGAATGGCAACAGGAAGGAAGAGGGGGATAACGATGAAATTGCAGATGACTCGGATAATTAGGACAATGTGTAGGAATACTGTCAACTCTGTGAACTCTTGACCTTTGTGTCAACAAACTCTAACCTTGCTTAACCCATATCCCTTTGCACCCTCAGATAGGAATAGGTCAGGTAGAACCAAGAGAGGATTCCTTGTGCGTTGCTGCCATTGAGAAAATTGACAATTAGGGGATTACTGTGGAAAGAGGGGTCACTATGTTAGTGGATGCTCAAAACGCTGCAAACGGCAATAGAGTGCTGCATTTTTTCAAACACTAATGTCTGAGGCTGAGAAAGGGTCTTATGAAATTGTGACGTTTTGGAAAGCTGCTGAGTGCAGAAAAGTTAGATTTACTTTGAAGATACAGTATGTTGCAATGAAATACTTCAACTGTAAAATATTATTATTCATGTATAAGACTCTCTTTAAATATTTTACAGATTTTCTCTATAAATATGTTAATCAAGTTTAGCATGTTTTAAAGTAACTGCCCAGttaaaatctcacttttaaaagttaacattctgttaactcatatccaaataatgttgttgactcgtcctatactcgtatttgtggccaaagcacaAATTGGAGAAGAAACACTTAAAAACCCCCACCTCAAACTTTTTCTCAAAAAACAAATAGTTATCATATATAATGTGACGTACTGTATCATTCAAATATATACAAGTTAGTCTTGTTTCCAGTCTCACAAGCTTGATTGATTGCCTGAAACTGTAGTAGATGATGCAATGGGCTCATTTGAGTGGTAAGGCGAAAACAACCAACAGTAGACGAAGGTTGAGGAGTGAAGTTGGGGGAGGTGCATCTGTAACAGCTGAAAGTATGACACTAACCACATTTCCTTCCACAGTTTtgcgagtaaagtcataccgtatataaaaaaaatcacgacagctgtgatgCAAAAAAGAAAGGTCGATGGAAACTCCTTTATGCGCAAATGTGAATATAATCaccatcatattgaagtaaacttAGTCACacgatatggtgtgtgtggtcctcaccactacgactcaggaaaccaagTAGTTTATAAGGCTACAGATTAAATTAtctatgatgaacttcacagggtggtgaatgtgCACAGTGAACTTGATGCTCCATTACAATacatatcgagggtcttattctggttacatgatgatcgatgcttaaATATTCTGGCTCTTATTATCCacaataatctcatcatgtagactagcctacccgcactgtatctgcgagctgttggctacagCGCATGTGCCAAAACCATAGTAGGCACATTTGTTATTTAACTCATCAGTTTTGTGACTAAACTATCGGTAgggttgaaaatgcgatggaaacattTAACTTTCGATTTTGAAAACTTCAGTGAAAAGACAATTTCGTGTGCACTGTCATCATGCACATatttttatccgcaacaagtccaTCGGGATtctagaatattcgcatgaaaatctgtcgccaattggatggaaacctggctaCTGATGTGGTTTTCCAACAAGGCTAAgtacaacatggcagtgttgccattgtttatGAAAGTTGTTCTTCATGTCGAAATAAATGTCTAT
>TU718061
aaaaaaataaaaaaataaactgtgGCTGAGAGAGGAGGGCACCAGGCTACAAACAGGGAGCAGACTGCAACCCTAGCCCGGCAGTTCCTGTGCCAGGAGTTGGTGACTACGAGCGGAGACCGAGAGAACCAAAGAGGACCCAAAGACAACGAGACTCTCCAAACTCTCCTCAGGCAGTGGAGGAGATAGCTGGAGAGGGCATCCCTGAGATCCTCAACGCAGTAGCCAAAGACGCCAGCTCTAGAACTTGGC

Function

NR:

description
Fanconi anemia group D2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052625.1 False 2065 mRNA 0.41 5 61250093 61255427
TU718061 True 252 lncRNA 0.53 3 61250142 61250851

Neighbor

gene id symbol gene type direction distance location
LOC118965359 fancd2 coding upstream 1874 61245922 ~ 61248219 (+)
LOC110528158 LOC106583188 coding upstream 16689 61200887 ~ 61233404 (+)
pob pob coding upstream 49633 61196718 ~ 61200460 (+)
LOC110528988 LOC106583198 coding upstream 614695 60631612 ~ 60635398 (+)
LOC118965307 NA coding upstream 684853 60563593 ~ 60565240 (+)
LOC110528159 LOC106583187 coding downstream 485 61255912 ~ 61376237 (+)
LOC110528160 LOC106583186 coding downstream 130141 61385568 ~ 61470736 (+)
parp3 parp3 coding downstream 232506 61487933 ~ 61514684 (+)
LOC110528161 LOC106583185 coding downstream 259929 61515356 ~ 61520408 (+)
LOC110528162 LOC106583183 coding downstream 278520 61533947 ~ 61539719 (+)
G631575 NA non-coding upstream 60291 61189385 ~ 61189802 (+)
G631573 NA non-coding upstream 61424 61188308 ~ 61188669 (+)
G631572 NA non-coding upstream 62204 61187635 ~ 61187889 (+)
G631559 NA non-coding upstream 84902 61164935 ~ 61165191 (+)
G631557 NA non-coding upstream 87018 61162544 ~ 61163075 (+)
G631599 NA non-coding downstream 125703 61381130 ~ 61381796 (+)
G631997 NA non-coding downstream 254909 61510336 ~ 61512131 (+)
G632027 NA non-coding downstream 272309 61527736 ~ 61528197 (+)
G632014 NA non-coding downstream 274408 61529835 ~ 61611282 (+)
G632082 NA non-coding downstream 357647 61613074 ~ 61613299 (+)
G630515 uroc1 other upstream 753664 60492277 ~ 60496429 (+)
G630516 NA other upstream 767036 60468931 ~ 60483057 (+)
G630327 NA other upstream 1101712 60147817 ~ 60148381 (+)
mustn1a NA other upstream 1140803 60107071 ~ 60109290 (+)
G630206 NA other upstream 1332542 59913345 ~ 59917551 (+)
G632146 NA other downstream 435854 61691281 ~ 61691647 (+)
G632776 NA other downstream 884089 62139516 ~ 62139991 (+)
G632809 LOC100194703 other downstream 975088 62230515 ~ 62231349 (+)
G632817 NA other downstream 990493 62245920 ~ 62329061 (+)

Expression


Co-expression Network