LOC110528161 (LOC106583185)


Basic Information

Item Value
gene id LOC110528161
gene name LOC106583185
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 61515356 ~ 61520408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609989.2
GACAGTCACTGCCTTACACagtgatagagaggaggaggagggatggaaagcGCATCCTCACATCTATCAGGGACTTAGACACCATCCTGAGTGAAGTGAAGTGATCACCTTCTACTCACCTGCTCTCACACTAGTGTGATCACAGCCTGGTCTGGACCAGGGAGATTCCCTCTACACCTATACCAGAGACTTCAAAACCTCTGGAAAACCCACTGGCTAACTCTATCCTCAGCAGTGTGGATCTTGTCCTGCTCATCCAGTGGAAATACCCAGTGTAACTGGTCTATGTGGACCTGTTCATGTCTGGATCTGCTTAACTGATGTCTCCTCACTAAAACAACACCTGGGATATCCAGAAAGGACGAATCATAAAATCCTAGTCTCTTTGAATTGGACTGGACATATCATAATCTCATATGGGACATGTCCAACATGATGACAAGTACGTGAAAAGAGAAGAAAGTTAACATTGCAATGGGGCCtgctgctgttgtgatgcctctGACTAGTCTTCTGTGAAATATGGAGAAATCTGGTCCGATGCTGGCCGCTATTCCCAATCGCACAGGGGCCAACCTCACAACTGGCCTATGGGGACCCAACCCCACAGTCCCCGCAGAGGTGGGAGTGGTCACCAGCTCCCAGTCTCAGATCAAAGATCTGATTGGGCTGTTTGCAATGGTGACCCTTAATCTCATCGCCCTATTGGCCAACACTGGAGTCATGGTGGCCATCGCCCGCGCCCCTCACCTGAAGAGGTTTGCCTTTGTGTGCCACCTGTGTGCAGTGGACCTGCTGTGTGCCATCCTCCTCATGCCTCTGGGCATCATCTCCAACTCACCCTTCTTTGGCACCGTGGTGTTCACCGTGTTGGAATGCCAGGTCTACATCTTCCTCAACGTGTTCCTCATCTGTGCCTCCATCCTCACCATCACCGCCATCAGTGTGGAGCGCTACTACTACATCGTCCATCCCATGCGCTACGAGGTGAAGATGAGCATCAATCTAGCCATCGGCATAATGCTCCTCATATGGGTCAAGTCCATCCTTCTGGCCCTGGTCACCCTGTTTGGTTGGCCTGCCTACGGGGCCCACAGCTCCATCGCTGCCAACCACTGCTCCCTCCACTGGAGCCACAGTCGGTTGAGGAAGGTGTTCGCCGTGCTCTTCAGCGTGGTGTGTTTCCTTTTACCTGCCATTGTCATCTTTGCTGTCTACTGTAACGTGTACAAGGTGGCGCGCTCGGCTGCCCTGCAGCACGCACCCGCGACCACCACCTGGGCCTCGTCCAACCCAGCCAAACGTGCCAACCGTTCTGACTCCATCAACAGCCAGACCACCATCATCACCGCCACACGCAGCCTGCCCCAGAGACTGTCCCCTGAGAGGGCATTCAGCGGGGGTAAGGCTGCCCTCACCCTGGTGGTCATTGTGAGCCAGTTCCTGCTCTGCTGGCTGCCTTACTTCTCCTTCCACCTGCACTTGTCCTTCAGATCGGCCCTGCAGAGTCCCGgggacgtggaggaggccgtcaCCTGGCTGGCCTACTCCTCCTTTGCTGTCAACCCTTTCTTTTATGGCCTTCTCAACAGACAGATCAGGGAGGAGTTGGTCAAGTTCCGGCGCTGCTGCTCCTCCGGGCCGGTGGAGCTGGTGGCCTCCAGCCATGAGGGCTCCTTTCAGGAGAACTTCCTCCAGTTCATTCAGAGAACCAGCAGCACGGCCGACAAGCGCTCCAGCTGCACCAACTCCAGCCCCAGGAACACTCTGGACCAGGGGATCAGAATACCTGGCCAGATACCAGAAGAGCATGGCTAAACAGAGGACAGTGGATAGCACACTTCAATTTGGACTGTTAATATGACAGCCCTCGGTACTCGTAGCACCCTGAGTTTTTCCTGATTATGTGTCCTGACCAGGAAAACTATAGGGCCCTGAGATTTTTCAAGTCAGATCATGTGGTTGGTAAAAACTCAAGCCCCTACTCATAAGCTGTACATAATATGCCTCTGAGTAGGTGTCCATTATTTATTGGTATGGGATTCATTCAGGTAAGGTCTCCAACACAAGACCAGTGTTTTAATGTGAAATATGAAATTATTGTGACAGAATTTCATTTACTTTACCATTGTTTCATGACAGGCCTAAACCGAAACATTCTGTtacagtctccatatatacttccattcattttttcagCTGGTACCAAgggaccttcagatgagtttTGTAAGGCCTGTGGCCTCAACATCATGTTCGatagtctcatctttccatagtttgtaggccaaaccgttggtacgctacagatgattttgtgagcagaccgattttcgggattgtctcgtggtctgacaaacatcgctctagttttgtcacctttcaccacagatgcagAATTGTGATATAtgcagatgtggtggattgagaggCATCCAATCCCAAAACAAACACATCCCTagcttaaattgacagattttttaTGGGGATTGTTTTATTATTACAATTAGATTGACACAGGGGCGCGGACATCTACCTTAGGGGGTTAAAGTGTATGCTTGTTTCATATAATGTTGTATgaattataaactcagcaaaaaaagaaacgtcctctcactgtcacctgcgtttattttcagcaaactcaacatttgtatgaacataagattcaaca

Function

NR:

description
probable G-protein coupled receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609989.2 True 2674 mRNA 0.50 2 61515356 61520408
Loading

Neighbor

gene id symbol gene type direction distance location
parp3 parp3 coding upstream 672 61487933 ~ 61514684 (+)
LOC110528160 LOC106583186 coding upstream 44620 61385568 ~ 61470736 (+)
LOC110528159 LOC106583187 coding upstream 139119 61255912 ~ 61376237 (+)
LOC118965308 NA coding upstream 259929 61250093 ~ 61255427 (+)
LOC118965359 fancd2 coding upstream 267137 61245922 ~ 61248219 (+)
LOC110528162 LOC106583183 coding downstream 13539 61533947 ~ 61539719 (+)
LOC110528166 NA coding downstream 179564 61699972 ~ 61707326 (+)
LOC110528992 NA coding downstream 451546 61971954 ~ 61996298 (+)
LOC110528167 LOC106583179 coding downstream 481145 62001553 ~ 62013335 (+)
LOC110528168 LOC106583178 coding downstream 504451 62024859 ~ 62135585 (+)
G631997 NA non-coding upstream 3225 61510336 ~ 61512131 (+)
G631599 NA non-coding upstream 133560 61381130 ~ 61381796 (+)
G631568 gpx1 non-coding upstream 263654 61235478 ~ 61251702 (+)
G631575 NA non-coding upstream 325554 61189385 ~ 61189802 (+)
G632027 NA non-coding downstream 7328 61527736 ~ 61528197 (+)
G632014 NA non-coding downstream 9427 61529835 ~ 61611282 (+)
G632082 NA non-coding downstream 92666 61613074 ~ 61613299 (+)
G632096 NA non-coding downstream 104270 61624678 ~ 61625133 (+)
G632098 NA non-coding downstream 105446 61625854 ~ 61626188 (+)
G630515 uroc1 other upstream 1018927 60492277 ~ 60496429 (+)
G630516 NA other upstream 1032299 60468931 ~ 60483057 (+)
G630327 NA other upstream 1366975 60147817 ~ 60148381 (+)
G632146 NA other downstream 170873 61691281 ~ 61691647 (+)
G632776 NA other downstream 619108 62139516 ~ 62139991 (+)
G632809 LOC100194703 other downstream 710107 62230515 ~ 62231349 (+)
G632817 NA other downstream 725512 62245920 ~ 62329061 (+)
LOC110528175 LOC105017014 other downstream 819613 62325429 ~ 62342019 (+)

Expression

LOC110528161(LOC106583185) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
End of interactive chart.

LOC110528161(LOC106583185) Expression in each Bioproject

Bar chart with 14 bars.
LOC110528161(LOC106583185) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
End of interactive chart.

Co-expression Network