LOC110528170 (LOC106565587)


Basic Information

Item Value
gene id LOC110528170
gene name LOC106565587
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62175981 ~ 62185946 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474207.2
ggaaAAGGAGAAGAACCTCTAACATTCCCACTGTTGATCCAGAATCAACCGGATTACTGCCACATTGTGACACATCCCATTGACATGATGAAGATCCAGCAGAAGCTGAAGATGGAGGAGTACGATGATGTGGACCAGATAACGTCTGACTTTCAGCTCTTATTCAACAATGCAAAGGCATACTACAAGGTAATATATCCCTGCCTGTAATAACAAACACATTCACTTGCTGGACTCTTTAGGGGAGAGAAGTAATGTAATGTTGTATGAAGGAGTTTTCCTAATAAATGCCCTGTCTATGGCTTAAACCTGGAATTGACCAAATGAAAGGGAGTGTGTTGCATGTCTGTAGCCAGACTCTCCAGAGTGCAGAGCAGCCTATAAGCTGTGGGACCTCTACCTGCGCACTAAGAATGAGTTTGTCCAGCGGGGGGAttatgatgacgatgatgaggaCGGGGACGATGCACAAGATAATCCTGGAGAGTCGGATGAGAATGCACCCAGTTGCCTGAAGGAGGTCCTTGAGCAGCTGTTGGATGCGGTGGTGAAATTCTCAGAGCCCTCTGGCATTTAGTCAGTGATCTGTTCCATAAACTACCAGTGACTATTATGCCATAGTAAAGGACCCAATAGATCTGAAAATCATTTCCCAGAAGATACAGATGAGCCTCTACAGAAGTGTTAGCGCCATGGCAAAAGACATAGATCTCCTGGCCAAGAATGCCAAAACGTACAATGGGCCTGGGTCACAGGTTTTTACGGATGCCAACACCATCAGAAATATTTTTttcacagagaaagacagaaattGAGCATGCTGAGCCCATCAAATCCGGCATTCACATCAAGGTCTGTCCACTATGACGAGGGGGAGTCGGAGGCAGAGAGCATCCACCACAGCATGGACATGAGTACCCCCATCTTCCAGCTGTACGAGGCTGTGCGGGGCGGAAGGAACAGCCAGGGACAGCTTATCGCCGAGCCTTTCCTCCAGCTGCCCTCCAGgaatgactacccagactactaCCAGCAGATCAGCCAGCCCATCTCCCTGCAACAGATTAGTATTGCTTCAGGTGAGAAGTGGCTGTATGGCTGCTGGTTCTACAGGCCAAATTAAACATTCCATCTTGCTACACGCAAGTTCCTGGAGAAGGAAGTCTTCAAGAGCGACTACTTCAACAAGATTCCCATCAGCATGATActgggaaaaggtgttgtcatgtTTGTCAAGCAGTGAAAGATGTGCGACTGACCAAGGAGCAGGAGAGCCGGCTGCCGTCCCATTGGCTGAAGAGCAAGGGCGCCCATTCCACAATGGCAGACTCACTGTGGCGTCTGCAAGACCTGATGCTGCGTGACACACTGAACATCCGCCAGACGAACAACCAGTAGGACATCTGAGCCACTGCTCCCTACACTGTCAGACAGGAAATGGGTTTAGGCTCATTTGAAAATGTGTAAATGTTGTTTTGTTATGTTACGTTAATGTGGGCATTCGTTTGTAGAATGGTTAAATTAGCTTGCTTACTCTGTTCAAGCTGTTTTGTGTTTGCATTTTAATTGTTCTAACAAGTGCATTATTGTATTTAATGTTTCTGTGATGGATAAAC

Function

NR:

description
LOW QUALITY PROTEIN: protein polybromo-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474207.2 True 1616 mRNA 0.47 9 62175981 62185946

Neighbor

gene id symbol gene type direction distance location
LOC110528169 LOC106583177 coding downstream 490 62159975 ~ 62175491 (-)
LOC110528991 LOC106583180 coding downstream 254842 61800678 ~ 61921139 (-)
LOC110528165 LOC106583181 coding downstream 426000 61634197 ~ 61749981 (-)
LOC110528164 LOC106583182 coding downstream 618793 61542003 ~ 61557188 (-)
gpx1 gpx1 coding downstream 938986 61218553 ~ 61237064 (-)
LOC110527134 LOC106583149 coding upstream 159136 62345082 ~ 62347315 (-)
LOC110528993 NA coding upstream 163156 62349102 ~ 62349904 (-)
LOC118965309 LOC106583169 coding upstream 320293 62506239 ~ 62520518 (-)
slc4a8 LOC106583168 coding upstream 352387 62538333 ~ 62589748 (-)
LOC118965401 NA coding upstream 359038 62544984 ~ 62545127 (-)
G632936 NA non-coding downstream 9038 62140952 ~ 62166943 (-)
G632933 NA non-coding downstream 38123 62137519 ~ 62137858 (-)
G632683 NA non-coding downstream 160256 62015342 ~ 62015725 (-)
G632638 NA non-coding downstream 196901 61977726 ~ 61979080 (-)
G632544 NA non-coding downstream 328304 61846602 ~ 61847677 (-)
G632991 NA non-coding upstream 31835 62217781 ~ 62218003 (-)
G632992 LOC106565589 non-coding upstream 32549 62218495 ~ 62219506 (-)
G632993 NA non-coding upstream 34355 62220301 ~ 62221099 (-)
G632994 LOC106583176 non-coding upstream 35503 62221272 ~ 62222445 (-)
G632995 NA non-coding upstream 36555 62222501 ~ 62222705 (-)
G632459 NA other downstream 484337 61691248 ~ 61691644 (-)
G631687 emc3 other downstream 976543 61198007 ~ 61199438 (-)
G631740 NA other downstream 984936 61190708 ~ 61191045 (-)
LOC110528989 LOC106583145 other downstream 1427882 60699279 ~ 60822525 (-)
G630747 NA other downstream 2092124 60083046 ~ 60083857 (-)
si:dkey-28n18.9 LOC106583160 other upstream 820829 62983119 ~ 63008072 (-)
LOC110528212 LOC106583293 other upstream 1599826 63785772 ~ 63827547 (-)
LOC110528216 LOC106565449 other upstream 1808570 63993536 ~ 64036771 (-)

Expression


Co-expression Network