LOC118965309 (LOC106583169)


Basic Information

Item Value
gene id LOC118965309
gene name LOC106583169
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62506239 ~ 62520518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052628.1
gagcgagagggaggggtagagtaTGAGAGCAGAGAAGGATAGAGTCCCAGAAGTGGAAAAACACTGCCTTACTGTGTGGGTCAATCTATTGGCTTCCAGATAGAACCCATCATATCAAGGAAATACAAGCATGAGCAGGTCTGTTGAAGATGCACTGGTCTCCGGAGCACGCGGCCCCCCTGTCCCAGTGGCCTGAGCAGCACCTGGATGTGTcttccaccacctcccctccctccgccCACAAACACGACTCACGTGGTTACACCACTGCAGCCGGATACCCCTGGGCCAGCGATGACATCTCTGCCCTCACCGCCTCTTCCTTGTTAAAACGCTATGCCGAAAAGTACTCAGGCCTGGAGCTGCCCTACGAAAGGCCTACCCCAGGGGCTTACTCAGAGCCTGGGGCCTTCCTGAAGAGTGAGACTGAGCCCTGGGCCCTGGAGTGTTACCCTGCGCTGGAAGCCCTGGCAGCAGGGGCCAAAGTGGGATCAGCATCAGTGGGCCTCCCTGGCACGGGCAGTGTGACGGTGGTGAACAGTAACTTGACCTCTGACCCTGGGTATAGTGGTGGTGGCTCCTGTAATGCCCCCCCCTCTCAGGACTACCCCCTCTCCTACAACAGCACCTACCTCTCCTCAGGATACTGCCTCCAACCCGGCTCAGCACTTCCCCCAGCCTCTCTGCAAACCACCCCCACCCTGGTGTCCAGCTACAACCCTACCAACCCTGTATACAACTACCCGCCAGGCTGCTACCCCCACCTCCAGACCAGCCTGGCAGCCAGTTACAGCCACAGCCACCCCAGTGCCTCCTACCTCCCCTCTGGCCTGAGCACCCCTACCCCCCTGACCCCCCGGTCCACCATGGCGGGGGGCAGCTATGGCTACCCCAGTCACAGCCTAGGGGCCAGCTCTGAGACAGGAGGGCCGCTGAAACGCAAGGCCTTTGAGATGgcggaagagggggaggagggaggagaaggagacggCTCGCGGTACAGGAAGTTCGTCAACGGCCACAGCAAGAGCCACGGCAATGGTCACGGCAACGACTACGACATAGCGGGCTCAGAAGTCCAGGCCTACAAGCCCGGCAAGCCTCTGGTGTCGCCTCCTTATGTTGGCCAGGGCGAGTACAGCCCCTCCTCAGGCCTAGGtggggagagtgggggaggaggggaacaTGGCTTTCCCCATCAGAGGCTGGCCATGAAGATGCCTGTGTCACATGCACGATCTGAGGACCCAACTGGAGGACGCTAGATCAGGCACTTgaaatgaaaactctcttgggGTCCTTCGGTTTTATTGGCATTTAAAAACCAAGTAGAGTACTTACTCTGACAAAAACTGGGGGAAAATAATAATTGGATTTTGCAATGAGAGGTCATGTGATCTAACCTGGAAGGAGAGAAAATGGCAAATTACTTGAATCCACCTCCTATCTTATATCATTTTCATTCTTAGATTTTCTCCAAAGAGTCAAGGGTCACTTTGTCCTGTATGGGTGTGGTGAGGTGGtgtgaggacagagggagggatctaGATGGATAGGGCTAAATCAGGCAGTCTGAATGGATTACCGACTGCTTCTCTCAGGATCCTATTTATTTCCCAATCTGCTACTTTGGCAGACAGTGACAttgcaatgttgttgttttgaggAGTTGCTCTCTTAATTGGAGTGGCCACTTGATATGGAAAGGACGTTTGACTCTATTACCTCCTACAGCACCATAAGAATCATAACCTTTCAGACCAAAAAGTAGAGAAGAAGAACATAATTGATGTGATGTACTTTAATAACTTGACACCACGAGCACAATGACAGCTCTTCTGAGGCTTGGTGCCTCTATACAACTCGCTTTGAAACGAatgtccccctctcccccctccccttttccctGTTTTCTTTTGACAGTGTTTCTATGttatttctccctctttctctacctctcatcACTACATTTTCATCATGTTTTCCCTTCCCTGCTTTTTCTCAGTTTGTTTCACTCACTCTTTTTCTTTTtctgttaaagctgcaatatgtaactttttgggcaacctgaccaaattcacatagaaatgtgagttatagatatgcTATGCTCATCGAAAGCAAgcctaagaagcagtagatctatTCTATGTGCTCGATTTCTATGCTTACCGGTCTTTAGTTTTTgcttcttttactttcggtttcgTACACCAGctttaaacagctgaaaatacaatagctttggttattgaaaatatatttcacagcagtttagatggtacaatgattctctacactatgcaTTGCTTATTTTGTcaaaaactgaaattaggtgaactattgtTCATTATGCACTGTTACATGCAGCTCTATCAATACATTGAAATACTTAAACCTGCAGAAAGAGATACTTaaacctgcaggaag
>XM_036983722.1
gagcgagagggaggggtagagtaTGAGAGCAGAGAAGGATAGAGTCCCAGAAGTGGAAAAACACTGCCTTACTGTGTGGGTCAATCTATTGGCTTCCAGATAGAACCCATCATATCAAGGAAATACAAGCATGAGCAGGTCTGTTGAAGATGCACTGGTCTCCGGAGCACGCGGCCCCCCTGTCCCAGTGGCCTGAGCAGCACCTGGATGTGTcttccaccacctcccctccctccgccCACAAACACGACTCACGTGGTTACACCACTGCAGCCGGATACCCCTGGGCCAGCGATGACATCTCTGCCCTCACCGCCTCTTCCTTGTTAAAACGCTATGCCGAAAAGTACTCAGGCCTGGAGCTGCCCTACGAAAGGCCTACCCCAGGGGCTTACTCAGAGCCTGGGGCCTTCCTGAAGAGTGAGACTGAGCCCTGGGCCCTGGAGTGTTACCCTGCGCTGGAAGCCCTGGCAGCAGGGGCCAAAGTGGGATCAGCATCAGTGGGCCTCCCTGGCACGGGCAGTGTGACGGTGGTGAACAGTAACTTGACCTCTGACCCTGGGTATAGTGGTGGTGGCTCCTGTAATGCCCCCCCCTCTCAGGACTACCCCCTCTCCTACAACAGCACCTACCTCTCCTCAGGATACTGCCTCCAACCCGGCTCAGCACTTCCCCCAGCCTCTCTGCAAACCACCCCCACCCTGGTGTCCAGCTACAACCCTACCAACCCTGTATACAACTACCCGCCAGGCTGCTACCCCCACCTCCAGACCAGCCTGGCAGCCAGTTACAGCCACAGCCACCCCAGTGCCTCCTACCTCCCCTCTGGCCTGAGCACCCCTACCCCCCTGACCCCCCGGTCCACCATGGCGGGGGGCAGCTATGGCTACCCCAGTCACAGCCTAGGGGCCAGCTCTGAGACAGGAGGGCCGCTGAAACGCAAGGCCTTTGAGATGgcggaagagggggaggagggaggagaaggagacggCTCGCGGTACAGGAAGTTCGTCAACGGCCACAGCAAGAGCCACGGCAATGGTCACGGCAACGACTACGACATAGCGGGCTCAGAAGTCCAGGCCTACAAGCCCGGCAAGCCTCTGGTGTCGCCTCCTTATGTTGGCCAGGGCGAGTACAGCCCCTCCTCAGGCCTAGGtggggagagtgggggaggaggggaacaTGGCTTTCCCCATCAGAGGCTGGCCATGAAGATGCCTGTGTCACATGCACGATCTGAGGACCCAACTGGAGGACGCTAGATCAGGCACTTgaaatgaaaactctcttgggGTCCTTCGGTTTTATTGGCATTTAAAAACCAAGTAGAGTACTTACTCTGACAAAAACTGGGGGAAAATAATAATTGGATTTTGCAATGAGAGGTCATGTGATCTAACCTGGAAGGAGAGAAAATGGCAAATTACTTGAATCCACCTCCTATCTTATATCATTTTCATTCTTAGATTTTCTCCAAAGAGTCAAGGGTCACTTTGTCCTGTATGGGTGTGGTGAGGTGGtgtgaggacagagggagggatctaGATGGATAGGGCTAAATCAGGCAGTCTGAATGGATTACCGACTGCTTCTCTCAGGATCCTATTTATTTCCCAATCTGCTACTTTGGCAGACAGTGACAttgcaatgttgttgttttgaggAGTTGCTCTCTTAATTGGAGTGGCCACTTGATATGGAAAGGACGTTTGACTCTATTACCTCCTACAGCACCATAAGAATCATAACCTTTCAGACCAAAAAGTAGAGAAGAAGAACATAATTGATGTGATGTACTTTAATAACTTGACACCACGAGCACAATGACAGCTCTTCTGAGGCTTGGTGCCTCTATACAACTCGCTTTGAAACGAatgtccccctctcccccctccccttttccctGTTTTCTTTTGACAGTGTTTCTATGttatttctccctctttctctacctctcatcACTACATTTTCATCATGTTTTCCCTTCCCTGCTTTTTCTCAGTTTGTTTCACTCACTCTTTTTCTTTTtctgttaaagctgcaatatgtaactttttgggcaacctgaccaaattcacatagaaatgtgagttatagatatgcTATGCTCATCGAAAGCAAgcctaagaagcagtagatctatTCTATGTGCTCGATTTCTATGCTTACCGGTCTTTAGTTTTTgcttcttttactttcggtttcgTACACCAGctttaaacagctgaaaatacaatagctttggttattgaaaatatatttcacagcagtttagatggtacaatgattctctacactatgcaTTGCTTATTTTGTcaaaaactgaaattaggtgaactattgtTCATTATGCACTGTTACATGCAGCTCTATCAATACATTGAAATACTTAAACCTGCAGAAAGAGATACTTGTAGAAACATACTTGAGAGAGAGAATTTTAACTAcagcatataaactcagcaaaaaaagaaagtccTCTCACGGTCAACtaggtatctggtgtggccaccagctgcattaaatactgcagtgtatctcctcctcatggactgaaccagatttgccaga
>TU719985
GCTAAATCAGGCAGTCTGAATGGATTACCGACTGCTTCTCTCAGGATCCTATTTATTTCCCAATCTGCTACTTTGGCAGACAGTGACAttgcaatgttgttgttttgaggAGTTGCTCTCTTAATTGGAGTGGCCACTTGATATGGAAAGGACGTTTGACTCTATTACCTCCTACAGCACCATAAGAATCATAACCTTTCAGACCAAAAAGTAGAGAAGAAGAACATAATTGATGTGATGTACTTTAATAACTTGACACCACGAGCACAATGACAGCTCTTCTGAGGCTTGGTGCCTCTATACAACTCGCTTTGAAACGAatgtccccctctcccccctccccttttccctGTTTTCTTTTGACAGTGTTTCTATGttatttctccc
>TU719986
gggaggggtagagtaTGAGAGCAGAGAAGGATAGAGTCCCAGAAGTGGAAAAACACTGCCTTACTGTGTGGGTCAATCTATTGGCTTCCAGATAGAACCCATCATATCAAGGAAATACAAGCATGAGCAGGTCTGTTGAAGATGCACTGGTCTCCGGAGCACGCGGCCCCCCTGTCCCAGTGGCCTGAGCAGCACCTGGATGTGTcttccaccacctcccctccctccgccCACAAACACGACTCACGTGGTTACACCACTGCAGCCGGATACCCCTGGGCCAGCGATGACATCTCTGCCCTCACCGCCTCTTCCTTGTTAAAACGCTATGCCGAAAAGTACTCAGGCCTGGAGCTGCCCTACGAAAGGCCTACCCCAGGGGCTTACTCAGAGCCTGGGGCCTTCCTGAAGAGTGAGACTGAGCCCTGGGCCCTGGAGTGTTACCCTGCGCTGGAAGCCCTGGCAGCAGGGGCCAAAGTGGGATCAGCATCAGTGGGCCTCCCTGGCACGGGCAGTGTGACGGTGGTGAACAGTAACTTGACCTCTGACCCTGGGTATAGTGGTGGTGGCTCCTGTAATGCCCCCCCCTCTCAGGACTACCCCCTCTCCTACAACAGCACCTACCTCTCCTCAGGATACTGCCTCCAACCCGGCTCAGCACTTCCCCCAGCCTCTCTGCAAACCACCCCCACCCTGGTGTCCAGCTACAACCCTA

Function

NR:

description
PREDICTED: putative fidgetin-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052628.1 False 2430 mRNA 0.50 4 62506239 62520518
XM_036983722.1 False 2574 mRNA 0.50 2 62506368 62520518
TU719985 False 387 lncRNA 0.42 1 62506998 62507384
TU719986 True 715 TUCP 0.59 2 62508219 62520510
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110528993 NA coding downstream 156335 62349102 ~ 62349904 (-)
LOC110527134 LOC106583149 coding downstream 158924 62345082 ~ 62347315 (-)
LOC110528170 LOC106565587 coding downstream 320293 62175981 ~ 62185946 (-)
LOC110528169 LOC106583177 coding downstream 330748 62159975 ~ 62175491 (-)
LOC110528991 LOC106583180 coding downstream 585100 61800678 ~ 61921139 (-)
slc4a8 LOC106583168 coding upstream 17815 62538333 ~ 62589748 (-)
LOC118965401 NA coding upstream 24466 62544984 ~ 62545127 (-)
LOC110528181 LOC106583167 coding upstream 92251 62612769 ~ 62616742 (-)
LOC110528182 LOC106583165 coding upstream 126464 62646982 ~ 62822425 (-)
LOC110528187 LOC106583162 coding upstream 361768 62882286 ~ 62900930 (-)
G633346 NA non-coding downstream 1434 62503355 ~ 62504805 (-)
G633347 NA non-coding downstream 4780 62499490 ~ 62501459 (-)
G633054 LOC106583173 non-coding downstream 201546 62304243 ~ 62304693 (-)
G633006 atf7 non-coding downstream 242645 62237766 ~ 62263594 (-)
G632996 LOC106583176 non-coding downstream 277792 62223219 ~ 62228447 (-)
G633425 NA non-coding upstream 86594 62607112 ~ 62607360 (-)
G633712 NA non-coding upstream 97371 62617889 ~ 62618485 (-)
G633722 NA non-coding upstream 100414 62620932 ~ 62621508 (-)
G633711 NA non-coding upstream 101300 62621818 ~ 62622144 (-)
G633728 NA non-coding upstream 111408 62631926 ~ 62632161 (-)
G632994 LOC106583176 other downstream 284189 62221272 ~ 62222445 (-)
G632459 NA other downstream 814595 61691248 ~ 61691644 (-)
G631687 emc3 other downstream 1306801 61198007 ~ 61199438 (-)
G631740 NA other downstream 1315194 61190708 ~ 61191045 (-)
LOC110528989 LOC106583145 other downstream 1758140 60699279 ~ 60822525 (-)
si:dkey-28n18.9 LOC106583160 other upstream 486257 62983119 ~ 63008072 (-)
LOC110528212 LOC106583293 other upstream 1265254 63785772 ~ 63827547 (-)
LOC110528216 LOC106565449 other upstream 1473998 63993536 ~ 64036771 (-)
G635167 NA other upstream 1511928 64032446 ~ 64035381 (-)
G636055 LOC100380681 other upstream 1797676 64318194 ~ 64326230 (-)
LOC118965309 LOC106583169 other upstream 835 62506239 ~ 62520518 (-)

Expression

LOC118965309(LOC106583169) Expression in all Baseline Samples

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LOC118965309(LOC106583169) Expression in each Bioproject

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LOC118965309(LOC106583169) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network