LOC110528181 (LOC106583167)


Basic Information

Item Value
gene id LOC110528181
gene name LOC106583167
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62612769 ~ 62616742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610037.2
GCGTCCAAAACGTGACTCATGTGACAGAGGTAGGTCACTCTGCGAGCGAGAGTCAGAGGGGTTTATTTAACACGTAGCTCTAGTGTCCTCCCCCACTTTCCCAACGCGCAACCAAGATTAGTGCATCTTCAGGGCTACCTCTTGACTGACTTCGTGGAGATCTCCGGGACAATTTACTCCCATTCGGCGacaaatataataataacaacaattgAAATATAAAGGAAAATACATTTTCTCTACATATTGTTAATCTCGAGTTAGTAGGAATACTGGACGATTTACTTTTATTAAATTTCATATGCATCCTTGAGTGAATACATTGGGAAACAAGCTTGCCCTTTCGTGATTAGTTTGGAGTAGGCCTAAAGATAATGGAAATGGAAAGGATTCAAAGGGCGCAACCCCCTCCCAAGTACCAGCAGGCTGAGCTGTCTGACATGCAAGGGATGGATTTCCCTATATATGTATACAAATCCCGTCGGGGAATGAAACGAGCAGAGGAATGCAAGGAAAACTACAAACTACCTCATCGACTTATTGAGAAGAAAAGGCGAGACAGGATAAACGAGTGCATCGCTCAGTTGAAAGATTTATTGCCTGAGCACCTGAAACTTACAACTCTTGGCCATCTGGAGAAGGCTGTGGTTTTGGAACTCACGCTCAAGCATGTGAAAGCCCTCACCACTCTACTGGAAAACCAGCAGCAGAAAATCCTCGCTCTGCAGAATGGCATGCAAATCGAGCAGTCCTCTCCCAGCCAGGAGAACAGCGAGGGGATGTTCCGCTCAGGCTTCCACGTCTGTGCCCAGGAGGTTTTACAGTACCTGGCCAACCAGGAGGGTGACGGAAACCTCACACCCTCCCACATGATCAACCACCTGCACAAGGTGGCCACTGAGATCCTCCAGGGCCCTCCCCACAGCCCCTGGCCCGAAAAGACCCCCagctaccaccaccaccaggccctGAGGGAGAAGCCTGTAGGCCAGCCCCCCAAGCCCAGCGAGGGCCACAGGAAGAACTGTGTGCCCGTCATACAGCGGGCGTATGCCCAGGTTGGCGGTGAGCAAAGTGGCAgtgatacagacacagacagcggctACGGTGGCGAGCAGGGTGAGCATCTGGCGTTGCGTGCAGGGTACTGTGGCCAAGAGAGCCATCTGAAGAGAGCCCTGGGCGAAAAGACGGCGTCATTGGGCGTCAAGCAGGAAGATGAACCTCGCCACAAACATGCCCGGGTGGAGTCATCCGATGACGAGTTTCTGTCAGGTGGAGAGTCATCCtcatcctcttcatcctcctccagcGGTCACGGCAGCTACATGAGCGCCTACTCCCCCCATCAGGCCCAACCTCATCCTCTCTGCATGCCCTTCTACCTCATCCCCCCTTCTGCTGCCGCTTATCTGCCCATGCTGGAGAAGTGCTGGTACTCTGGGGCCATGCCCATGATCTACCCTGGCCTGGGGGGCACCGCACAGGGCATGCCTAGCGACACGCATGCCCAAACTTCCCTGATTACGATATCCCCCAGGGggcactctccctctccccccaacGTGGCCCAGAGCCCCATGGACTCACCAGCCCTCCTCCAAGCGTTAAAGCCCATTAACCTGGAAACCAAAGACTGAGAGACCACTGAACAGTGTTATTGAACATAGAGACTGCTCTGCCGAGAGGGAACATGGGGGGGAACATGACTAACAGTCAGATCACCCACCATCACCCCTCTCCCCTGGTCCCTCACCCCAGAGGTCAGAAGAccgaagggagacagagagcatgCAGCTGATCTGGTCCCGGACTGGTGATATATCATCCACAGCCACACTGCTGCGAAGACAAGAAAGAGTGAAGGTGTAGAATGAAGACAGCTGAACCTGTTACCTGACCCTCTACCCTCTGAATGTTTGACTTAAAATGCATACCCCCACCAGAGCGCTGAGTGCATCGTTGACCCCACTGATCTGGACCTGCCCTAAACACACACCCTTGGTTGAATGTAAAAGAGAGGCAATCCAGGGGATGCTGCTGTTGAGGTTTCTACATGCTGATGACACTGACAGGTCTCAGTTGTAGCTGCtgccatagagacacatacacGTCCTAAATCATGTTACACCTAATGTCAACAGTCACCTTTCACCCAAAGGTCGCTGTCTATCTACCTTAGGTAACCATTGCCATCGCTGACAATACCCTTTGCCCCATTTCCTATGACAACAACAAGCGCTCTGACGAAAATAATGATCCCCACAACTGTACAGCCAGGAGCAAAGGGTACGCCAATTCACACTTTATGGAGTTAGTGATGTCATCACGTTGAGATGGATTTTCTGTCATTATTGTGTATACTTCTTGTACATCTCTATTTTTGATATGTGTCCTAATTCTCAGACTAGAGAGAGGGGTAGTAGAGTGTGGACAGTCATTTTAGTGTAAAATAAACCCTGTACATTAAACCCTGTACATACTGTAGCCCTGTGCTGGCCCTGGTCTGCGTTTTTCAGCAATCCGCTTCTCCTCAAGTCAAACCTGGTGTTTGTTCATGCTGTTGCCTTTTACTTGTGAAAAGCTGATAAAAACATCATTGGATGtttattaaatgtatttgtatgAATACTGCAGTCTAAGGAGTTGGCGAGAAGTGAATGTATATGTTTTAACAGAACATTTGTTTTTTATAGAAAGATGTACTTGGGACCTACCAGAAAGTTGTTGATGTACATACTTTGTCTAAATGGTGATATACATTATATAAGCGTATTAATAAAGTATTTTTTTCCTGTGGAAA

Function

NR:

description
class E basic helix-loop-helix protein 40-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610037.2 True 2803 mRNA 0.49 5 62612769 62616742

Neighbor

gene id symbol gene type direction distance location
slc4a8 LOC106583168 coding downstream 23021 62538333 ~ 62589748 (-)
LOC118965401 NA coding downstream 67642 62544984 ~ 62545127 (-)
LOC118965309 LOC106583169 coding downstream 92251 62506239 ~ 62520518 (-)
LOC110528993 NA coding downstream 262865 62349102 ~ 62349904 (-)
LOC110527134 LOC106583149 coding downstream 265454 62345082 ~ 62347315 (-)
LOC110528182 LOC106583165 coding upstream 30240 62646982 ~ 62822425 (-)
LOC110528187 LOC106583162 coding upstream 265544 62882286 ~ 62900930 (-)
si:dkey-28n18.9 LOC106583160 coding upstream 366377 62983119 ~ 63008072 (-)
LOC110528994 LOC106583141 coding upstream 511448 63128190 ~ 63142500 (-)
LOC110528195 LOC106565465 coding upstream 674085 63290827 ~ 63297342 (-)
G633425 NA non-coding downstream 5409 62607112 ~ 62607360 (-)
G633346 NA non-coding downstream 107964 62503355 ~ 62504805 (-)
G633347 NA non-coding downstream 111310 62499490 ~ 62501459 (-)
G633054 LOC106583173 non-coding downstream 308076 62304243 ~ 62304693 (-)
G633712 NA non-coding upstream 1147 62617889 ~ 62618485 (-)
G633722 NA non-coding upstream 4190 62620932 ~ 62621508 (-)
G633711 NA non-coding upstream 5076 62621818 ~ 62622144 (-)
G633728 NA non-coding upstream 15184 62631926 ~ 62632161 (-)
G632994 LOC106583176 other downstream 390719 62221272 ~ 62222445 (-)
G632459 NA other downstream 921125 61691248 ~ 61691644 (-)
G631687 emc3 other downstream 1413331 61198007 ~ 61199438 (-)
G631740 NA other downstream 1421724 61190708 ~ 61191045 (-)
LOC110528212 LOC106583293 other upstream 1169030 63785772 ~ 63827547 (-)
LOC110528216 LOC106565449 other upstream 1377774 63993536 ~ 64036771 (-)
G635167 NA other upstream 1415704 64032446 ~ 64035381 (-)
G636055 LOC100380681 other upstream 1701452 64318194 ~ 64326230 (-)

Expression


Co-expression Network