LOC118965310


Basic Information

Item Value
gene id LOC118965310
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62879135 ~ 62881941 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052629.1
GTGTGGCTAAAGACTTCAGTTACAAAAGGCTTTGTTTACACAGACAGcctaattctgatatttttcacttattggtcttttgaccaatcagatcagctctgaaaaagatctgatgtgaaaaggtCTGACGTTATTGGTCAGAAGACCAACTAGTGGAAAAAAGATCAGAAACGGGCTGCAAGTCTAAACACAGCCTTAAGGATCAGAGTCAGTATGTATAGATACAAACATACGATTGGGACATTTCAGCTGCCATACAGTGGGGAGACATCAACTGAAGGCCGCCAATCTGAAACTCTACAATCAAGCAGCAAGTCTCCAAACAAAgacctgagccctaggaccatgcctcgggaCTACCTAGTCTGATGACCCctttctgtccccagtccacctggtcgtgctgctgctccagtttcaactgttctccttgcggctatggaaccctgacctgttcaccgaatgtgctacctgtcccagacctgctgttttggacactctctctaccgcacctgctgtctctaactctgaatgatcggctatgaaaagccaactgacatttactcctgaggtgctgacctcgATCCAACTcaagagacatggattgtgtatgtgtgccattcagagagtgaatgggcaaggcaaaatattCAAGTTCCTTCAAACGGGGTATGGTATTAGGTGCCATgggcactggtttgtgtcaagaactgcaacgctgctgtttttttCACTCAACagtttatcaagaatggtccaccacccgaacaaagggcatccagccaacttgacacaactgtgggaagcattggagggaacatggaccagcatccctgtgaaatgcttgacaccttgtggagtccatggtCCAATGagttgagactgttctgagggcaaaagggggcactactcaacattaggaaggtgttcttaatgttttgtacactcagtatccATTGTTTCCATGAACAGCTatttctacatttaaaaaaaaataatgttacaTATATTTTCTCATATTTAGGTACAGTATTTTTCATACAAAGAAGCACATTACTTCTCATATTCAGTGCTTAGTGCTCACAAGGGCTTTATTGTAATACCCACTAGAGGGCAGCACAGACTCACAAATCCATTTGATACATGAAAAATATTACCAAAACGAGCTGCACTGGTCTTTCTCATTTCGATCTTTTACAGCTCAGTATTGACTATTATTCTCACACAGTAAAGTCATAACCTCTTGGTTAACACAGTCCCCTAATCTACTGCCTTTATACAGTTCACAGAGCAATAAGACACCTTTCTAAACAGATAGAAGGGATTGATGGCACTCCGCTAGTGCTGAAGACATGCACTCAGCAGCAACCCACCACATCCACAACCTCCTACTACCCTCCATCTGGTCATATCCATCTTCAGACCCCTCACCCCAGGTATATTACTATTCTCTCAGAGATCCTGTTCCTCTGCACCGCTCTCCCCTGGCAGATTCATAGCAGTTTCTCTCAGCATGTTTGTAATGTGAGCGTTGTGAGAGGAATTATTTGGTCGGATCAGGAGGGAACAGTATATACACCATATATTGTCTCATGTTAACCATATTTCCCTGTGTCATGTGGCGTGAAGGTGGCATGTTGTACGATATTACCCCAGTTCCTTCACTGATTCCTGAAGCACTGATTGATGAGCTGGTAATATGGTGGAATAAAGTTATTATTCTCTCGCA
>TU720206
CATTTCAGCTGCCATACAGTGGGGAGACATCAACTGAAGGCCGCCAATCTGAAACTCTACAATCAAGCAGCAAGTCTCCAAACAAAgacctgagccctaggaccatgcctcgggaCTACCTAGTCTGATGACCCctttctgtccccagtccacctggtcgtgctgctgctccagtttcaactgttctccttgcggctatggaaccctgacctgttcaccgaatgtgctacctgtcccagacctgctgttttggacactctctctaccgcacctgctgtctctaactctgaatgatcggctatgaaaagccaactgacatttactcctgaggtgctgacctcgATCCAACTcaagagacatggattgtgtatgtgtgccattcagagagtgaatgggcaaggcaaaatattCAAGTTCCTTCAAACGGGGTATGGTATTAGGTGCCATgggcactggtttgtgtcaagaactgcaacgctgctgtttttttCACTCAACagtttatcaagaatggtccaccacccgaacaaagggcatccagccaacttgacacaactgtgggaagcattggagggaacatggaccagcatccctgtgaaatgcttgacaccttgtggagtccatggtCCAATGagttgagactgttctgagggcaaaagggggcactactcaacattaggaaggtgttcttaatgttttgtacactcagtatccATTGTTTCCATGAACAGCTatttctacatttaaaaaaaaataatgttacaTATATTTTCTCATATTTAGGTACAGTATTTTTCATACAAAGAAGCACATTACTTCTCATATTCAGTGCTTAGTGCTCACAAGGGCTTTATTGTAATACCCACTAGAGGGCAGCACAGACTCACAAATCCATTTGATACATGAAAAATATTACCAAAACGAGCTGCACTGGTCTTTCTCATTTCGATCTTTTACAGCTCAGTATTGACTATTATTCTCACACAGTAAAGTCATAACCTCTTGGTTAACACAGTCCCCTAATCTACTGCCTTTATACAGTTCACAGAGCAATAAGACACCTTTCTAAACAGATAGAAGGGATTGATGGCACTCCGCTAGTGCTGAAGACATGCACTCAGCAGCAACCCACCACATCCACAACCTCCTACTACCCTCCATCTGGTCATATCCATCTTCAGACCCCTCACCCCAGGTATATTACTATTCTCTCAGAGATCCTGTTCCTCTGCACCGCTCTCCCCTGGCAGATTCATAGCAGTTTCTCTCAGCATGTTTGTAATGTGAGCGTTGTGAGAGGAATTATTTGGTCGGATCAGGAGGGAACAGTATATACACCATATATTGTCTCATGTTAACCATATTTCCCTGTGTCATGTGGCGTGAAGGTGGCATGTTGTACGATATTACCCCAGTTCCTTCACTGATTCCTGAAGCACTGATTGATGAGCTGGTAATATGGTGGAATAAAGTTATTATTCTCTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052629.1 False 1729 mRNA 0.44 2 62879135 62881941
TU720206 True 1485 lncRNA 0.45 2 62879376 62881938

Neighbor

gene id symbol gene type direction distance location
LOC110528186 LOC106583163 coding upstream 787 62876024 ~ 62878348 (+)
LOC110528184 NA coding upstream 14165 62860549 ~ 62864970 (+)
LOC110528183 NA coding upstream 35806 62840915 ~ 62843329 (+)
LOC110528177 LOC106583170 coding upstream 396528 62366941 ~ 62482607 (+)
LOC110528175 LOC105017014 coding upstream 537116 62325429 ~ 62342019 (+)
LOC118965311 NA coding downstream 106540 62988481 ~ 63012558 (+)
LOC110528188 LOC106583159 coding downstream 126205 63008145 ~ 63011839 (+)
LOC110528191 LOC106565469 coding downstream 133461 63015402 ~ 63111773 (+)
LOC110528193 dtx3l coding downstream 236623 63118564 ~ 63128031 (+)
LOC110528194 LOC106583304 coding downstream 341877 63223818 ~ 63288934 (+)
G633577 NA non-coding upstream 43544 62828493 ~ 62835591 (+)
G633563 NA non-coding upstream 64710 62810290 ~ 62814425 (+)
G633513 NA non-coding upstream 137548 62740860 ~ 62741587 (+)
G633454 NA non-coding upstream 231393 62647134 ~ 62647742 (+)
G633448 NA non-coding upstream 238397 62639600 ~ 62640738 (+)
G633591 NA non-coding downstream 5926 62887867 ~ 62888419 (+)
G633626 NA non-coding downstream 66749 62948690 ~ 62948925 (+)
G633643 NA non-coding downstream 80465 62962406 ~ 62962852 (+)
G633662 NA non-coding downstream 106560 62988501 ~ 63011854 (+)
G632817 NA other upstream 550074 62245920 ~ 62329061 (+)
G632809 LOC100194703 other upstream 647786 62230515 ~ 62231349 (+)
G632776 NA other upstream 739144 62139516 ~ 62139991 (+)
G632146 NA other upstream 1187488 61691281 ~ 61691647 (+)
G633613 NA other downstream 47457 62929398 ~ 62929699 (+)
LOC110528206 hoxc6 other downstream 738412 63619980 ~ 63622602 (+)
LOC110528222 LOC106583247 other downstream 1314100 64099788 ~ 64201232 (+)
G635332 LOC100380681 other downstream 1436259 64318200 ~ 64326259 (+)
G635635 NA other downstream 1903275 64785216 ~ 64786393 (+)

Expression


Co-expression Network