LOC110528187 (LOC106583162)


Basic Information

Item Value
gene id LOC110528187
gene name LOC106583162
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62882286 ~ 62900930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610044.2
CCCACGTCACCTAACATTGGAAACTTTAAGACAAAGACCACTCTGGAACGTCCAAACAATGACACGAGGGGAGCGTTGAACATTTCCATTGGACACTCAGGAAACCCTTTTATTCATTGGCCTGCCAACCTCATCCACGCTTCGTTTTTCCCACGGCGAGCTTCTGGCCGACGCGGCTTTTGTTGGCATCACAGCAGAACTCGAGCAGATGGTGAGGTGGACCAGTTGAGCACCAGTGACAAGGACTGCCACACGCACAATCGCGCGTTTGAAATCAGCTGACTAGCCCTGCTGCGCTGGTCAGCGCCAGGTGATCCCTGCATGTTGAGTTGGAGGAGGGCAAGAGAATCGCGAGCTCAAGGCAGGCTCTTTGTGCGGGTTACCAGTGGCGAGGTTCTTAGTGTTCTACAGTCAGCAGCGCAGAAGCACAGAGGACAGAAAAAAACGGCTCCTGGAGAGAATAAAACGTGTCCTCTCTGAATATAGACGTCGCTTTGCTTATTCTGCTGAATTCTGAAgttaagagagagaaaaacacatgagtggaggaagaggataaCCCTGACCATCCCCTGGCCCCATTctgaaacacactcacacacattcacccGCACTGTGGAACGCAGCTCTACCAGCCACTACCAGCCTGTACAGAGAGGACACTGATGACCATTGGTTGTTGATGTCACATCCCACACCTACCCTCCAGGCCCTCCTCAGGAACCCGGCCTCTCCTCTAAGAGCAGtgtgaccagacagagagagcagacagcATGACTCTAAGCCCCCTCCCTTGGCCCCCACTGGCATGGCTGTGTGTAGGGCTGCTGTTGCCCCTGCTGCCCCTGGTGCGGGGCGGGGAGTGCCCGCGGCTGTGCGTGTGTGAGGTGCGCCCCTGGTTCACCCCCCAGTCCACCTACAGGGAGGCGGCCACAGTGGACTGCAACGACCTGCGGCTGACACGCATCCCCTCCAACCTATCCTCTGACACCCAGGTGCTGCTGCTCCAGAGCAACTCCATCGCCCACACCAGCGGGGAGCTAGAGGCCCTGTTCAATCTGACGGAGCTGGACCTATCCCAGAATAACTTCAGCAGTGTGGAAGCCGTGGGCCTGGCCAACATGAACCAGCTCACCACCCTGCACCTGGAGGAGAACCAGATCAGCCAGCTGCCCGACCACTGCCTGCAGGACCTGAGCAACCTGCAGGAGCTCTATATCAACCACAACCAGATCAGCACCATTGCCCCAGGGGCCTTCTCTGGCCTGCGCAGCCTGCTGCGCCTCCACCTCAACTCCAACAGGCTCCAGGTCATCGACAGCCGCTGGTTCGAGGCCACGCCCAACCTGGAGATCCTGATGATCGGCGATAACCCCGTCATTGGTATCCTGGACATGAACTTCAAGCCCCTGGGGAGTCTGAGGAGCCTGGTTCTGGCCGGCATGGATCTCACCGACGTTCCCGGGAGTGCTCTGGTGGGTCTGGATAACCTGGAAAGCCTGTCCTTCTACGACAACAAGCTGGTCCGAGTTCCCCAGCTGGCCCTGCAGAAAGTGCAGAACCTGAAGTTCCTGGACCTGAACAAGAACCCGGTGCACAAGATCCAGGAGGGGGACTTCAGGAACATGCTGCATCTGAAGGAGCTTGGCATCAACAACATGGCTGAGCTGGTGTCCATCGACCGCTACGCCCTGGACAACCTGCCTGAGCTGACCAAGCTGGAGGGCACCAACAACCCCAAGCTGTCCTTTGTCCACCGGACAGCCTTCAGGGACGTATCCTCATTGGAGAGCCTGATGCTCAACAACAACGCCCTCAATGCCATCTACCAGCGCACCGTGGAGGCGCTGCCCAATCTGCGCGAGATCAGCCTGCACAGCAACCCGCTGCGCTGTGACTGCGTCATCCAGTGGATGAGCTCAAACAGGACCAGTGTGCGATTCATGGAGCCGCGGGCCATGCTGTGTAGCTCACCGCCTGAGCTCCGGGGCCAGCAGGTCAGGGAGGTGAGGCTACAGGACTCCCCAGAGCAGTGCCTGCCCCTCATCTCCCACAACACCTTCCCCAGCCACCTGAGCCTTGAGCTGGGCATGAGTGTCAGCTTGGACTGCCGGGCCATGGCCGAGCCCGAGCCCGAAATCTACTGGGTGTCTCCTATGGGGAGCAAGATCACGGTAGACATGGTGTCAGAGCGGTACCACCTGAGCAGTGAGGGCACCCTGCGGCTGTCCCAAGTCCAGGTGGAGGACTCAGGCCGCTACACCTGCGTGGCTCAGAACACAGAGGGGGCCGACACACGCGTCACCACCATCCGGGTCAACGGCACCCTGCTGGACAGTGTCGAGGTGATGAAGATCTACGTCAAGCAGACCGAGTCCCACTCCATTCTGGTCTCCTGGAAGATTAACTCCAACGTCATGACCTCCAACCTTAAATGGGCCTCGGCCACCATGAAGATTGACAATCCCCACATCACCTACACTGCACGCGTGCCCGTCGACGTGCACGAGTACAACCTGACCCACCTGCAGCCGGGCACTGAGTATGAGGTGTGCCTCACCGTCTCCAACATCCACCTGCAGACCCACAAGTCGTGTGTCAATGTGACCACGCGCAGCAACACCTTCGCCCTGGACGTGTCGGACCAGAGGCCTAGCGCCGCCCTGCTAGTCGTCATGGCCACCATGCTGGCCTTCCTCAGCCTGGCTACGGTGGGGGTGTACGTGGCACGGCGCTGGAAGAGGAAGAACTACCACCACTCCCTGAAGAAGTACATGCAGAAGAcgtcctccatccccctcaatgAGCTCTACCCGCCCCTCATCAACCTGTGGGAGGTGGACAGTGAGAAGGACAAGGAGGGCGGGGCAGAGAGCAAGCCCTCCCCCGTGGACACCACACGCAGCTACTACATGTGTTGAGGGGGTCGCCCCTCCTCCAGCACACACAGACCCACTTGCAATGTTGGGGGCAAAAATCAGATAGttgcaaatgtttttatttttagctTTGCTAATAAGTAGCAGAGTGATAAGGACAGGATTTGTATTAGTATAGCGTATCGCCTTTGTTTTGACTCTATTTCTCTTTTATAGTTTGGACTATTCCAAGATGGCAGCTGTGTCTAGCTTCTAGGTTGTCTCAGTTGAGCTGCTTTATGGTGCGTTTTTGATAGCGCAGCCTTTTGGCTTGTTGCCATGGACCCACTTTCTTAGTGTCGATAACGCAGCAACAGGGACTACTAGTCTAGTTAAAGGTTCCTCTGGCAGTGTTGGTTGAGATCACatagtttttttctctctttttgtaAAACAGGTAATCTGTTGTGCACTGAAATGTAAAGGAGTTTGTATGGACTTCATTTAAAAGCTGACTAAGGGGATTAGACTTGTTATACTGTCTACTGAATAACGTTAGCGATTGTACGGTAATGTTGTATCAACTATCATTTGAAACTCTTTTTCAATTTTAATTGGGAAAAAAGTAGAAAATAGTTTGCTGATAAATGTTCTGTAAAGCACGAGAAATGTGAATGTTTGATAACATGCAGTTACTAGGTACAGTAGTAGCTTTATTTACTCTGAATTATTTCTTATCTGCTAGAATCGCTGACCACTTACTTTTGTTGTGATTTCATCACACAAAATGTTGTATATGAGGAAGaagttgaaataaataaaatgttgatCTTTTTATATAAATATTGTCTCTAAATCA
>XM_036983732.1
CCCACGTCACCTAACATTGGAAACTTTAAGACAAAGACCACTCTGGAACGTCCAAACAATGACACGAGGGGAGCGTTGAACATTTCCATTGGACACTCAGGAAACCCTTTTATTCATTGGCCTGCCAACCTCATCCACGCTTCGTTTTTCCCACGGCGAGCTTCTGGCCGACGCGGCTTTTGTTGGCATCACAGCAGAACTCGAGCAGATGGTGAGGTGGACCAGTTGAGCACCAGTGACAAGGACTGCCACACGCACAATCGCGCGTTTGAAATCAGCTGACTAGCCCTGCTGCGCTGGTCAGCGCCAGGTGATCCCTGCATGTTGAGTTGGAGGAGGGCAAGAGAATCGCGAGCTCAAGGCAGGCTCTTTGTGCGGGTTACCAGTGGCGAGGTTCTTAGTGTTCTACAGTCAGCAGCGCAGAAGCACAGAGGACAGAAAAAAACGGCTCCTGGAGAGAATAAAACGTGTCCTCTCTGAATATAGACGTCGCTTTCAtcggagtctgtgtgtgtggagaggcaTTCCGCTGGATGCTAAAACGCTAAGGCTTATTCTGCTGAATTCTGAAgttaagagagagaaaaacacatgagtggaggaagaggataaCCCTGACCATCCCCTGGCCCCATTctgaaacacactcacacacattcacccGCACTGTGGAACGCAGCTCTACCAGCCACTACCAGCCTGTACAGAGAGGACACTGATGACCATTGGTTGTTGATGTCACATCCCACACCTACCCTCCAGGCCCTCCTCAGGAACCCGGCCTCTCCTCTAAGAGCAGtgtgaccagacagagagagcagacagcATGACTCTAAGCCCCCTCCCTTGGCCCCCACTGGCATGGCTGTGTGTAGGGCTGCTGTTGCCCCTGCTGCCCCTGGTGCGGGGCGGGGAGTGCCCGCGGCTGTGCGTGTGTGAGGTGCGCCCCTGGTTCACCCCCCAGTCCACCTACAGGGAGGCGGCCACAGTGGACTGCAACGACCTGCGGCTGACACGCATCCCCTCCAACCTATCCTCTGACACCCAGGTGCTGCTGCTCCAGAGCAACTCCATCGCCCACACCAGCGGGGAGCTAGAGGCCCTGTTCAATCTGACGGAGCTGGACCTATCCCAGAATAACTTCAGCAGTGTGGAAGCCGTGGGCCTGGCCAACATGAACCAGCTCACCACCCTGCACCTGGAGGAGAACCAGATCAGCCAGCTGCCCGACCACTGCCTGCAGGACCTGAGCAACCTGCAGGAGCTCTATATCAACCACAACCAGATCAGCACCATTGCCCCAGGGGCCTTCTCTGGCCTGCGCAGCCTGCTGCGCCTCCACCTCAACTCCAACAGGCTCCAGGTCATCGACAGCCGCTGGTTCGAGGCCACGCCCAACCTGGAGATCCTGATGATCGGCGATAACCCCGTCATTGGTATCCTGGACATGAACTTCAAGCCCCTGGGGAGTCTGAGGAGCCTGGTTCTGGCCGGCATGGATCTCACCGACGTTCCCGGGAGTGCTCTGGTGGGTCTGGATAACCTGGAAAGCCTGTCCTTCTACGACAACAAGCTGGTCCGAGTTCCCCAGCTGGCCCTGCAGAAAGTGCAGAACCTGAAGTTCCTGGACCTGAACAAGAACCCGGTGCACAAGATCCAGGAGGGGGACTTCAGGAACATGCTGCATCTGAAGGAGCTTGGCATCAACAACATGGCTGAGCTGGTGTCCATCGACCGCTACGCCCTGGACAACCTGCCTGAGCTGACCAAGCTGGAGGGCACCAACAACCCCAAGCTGTCCTTTGTCCACCGGACAGCCTTCAGGGACGTATCCTCATTGGAGAGCCTGATGCTCAACAACAACGCCCTCAATGCCATCTACCAGCGCACCGTGGAGGCGCTGCCCAATCTGCGCGAGATCAGCCTGCACAGCAACCCGCTGCGCTGTGACTGCGTCATCCAGTGGATGAGCTCAAACAGGACCAGTGTGCGATTCATGGAGCCGCGGGCCATGCTGTGTAGCTCACCGCCTGAGCTCCGGGGCCAGCAGGTCAGGGAGGTGAGGCTACAGGACTCCCCAGAGCAGTGCCTGCCCCTCATCTCCCACAACACCTTCCCCAGCCACCTGAGCCTTGAGCTGGGCATGAGTGTCAGCTTGGACTGCCGGGCCATGGCCGAGCCCGAGCCCGAAATCTACTGGGTGTCTCCTATGGGGAGCAAGATCACGGTAGACATGGTGTCAGAGCGGTACCACCTGAGCAGTGAGGGCACCCTGCGGCTGTCCCAAGTCCAGGTGGAGGACTCAGGCCGCTACACCTGCGTGGCTCAGAACACAGAGGGGGCCGACACACGCGTCACCACCATCCGGGTCAACGGCACCCTGCTGGACAGTGTCGAGGTGATGAAGATCTACGTCAAGCAGACCGAGTCCCACTCCATTCTGGTCTCCTGGAAGATTAACTCCAACGTCATGACCTCCAACCTTAAATGGGCCTCGGCCACCATGAAGATTGACAATCCCCACATCACCTACACTGCACGCGTGCCCGTCGACGTGCACGAGTACAACCTGACCCACCTGCAGCCGGGCACTGAGTATGAGGTGTGCCTCACCGTCTCCAACATCCACCTGCAGACCCACAAGTCGTGTGTCAATGTGACCACGCGCAGCAACACCTTCGCCCTGGACGTGTCGGACCAGAGGCCTAGCGCCGCCCTGCTAGTCGTCATGGCCACCATGCTGGCCTTCCTCAGCCTGGCTACGGTGGGGGTGTACGTGGCACGGCGCTGGAAGAGGAAGAACTACCACCACTCCCTGAAGAAGTACATGCAGAAGAcgtcctccatccccctcaatgAGCTCTACCCGCCCCTCATCAACCTGTGGGAGGTGGACAGTGAGAAGGACAAGGAGGGCGGGGCAGAGAGCAAGCCCTCCCCCGTGGACACCACACGCAGCTACTACATGTGTTGAGGGGGTCGCCCCTCCTCCAGCACACACAGACCCACTTGCAATGTTGGGGGCAAAAATCAGATAGttgcaaatgtttttatttttagctTTGCTAATAAGTAGCAGAGTGATAAGGACAGGATTTGTATTAGTATAGCGTATCGCCTTTGTTTTGACTCTATTTCTCTTTTATAGTTTGGACTATTCCAAGATGGCAGCTGTGTCTAGCTTCTAGGTTGTCTCAGTTGAGCTGCTTTATGGTGCGTTTTTGATAGCGCAGCCTTTTGGCTTGTTGCCATGGACCCACTTTCTTAGTGTCGATAACGCAGCAACAGGGACTACTAGTCTAGTTAAAGGTTCCTCTGGCAGTGTTGGTTGAGATCACatagtttttttctctctttttgtaAAACAGGTAATCTGTTGTGCACTGAAATGTAAAGGAGTTTGTATGGACTTCATTTAAAAGCTGACTAAGGGGATTAGACTTGTTATACTGTCTACTGAATAACGTTAGCGATTGTACGGTAATGTTGTATCAACTATCATTTGAAACTCTTTTTCAATTTTAATTGGGAAAAAAGTAGAAAATAGTTTGCTGATAAATGTTCTGTAAAGCACGAGAAATGTGAATGTTTGATAACATGCAGTTACTAGGTACAGTAGTAGCTTTATTTACTCTGAATTATTTCTTATCTGCTAGAATCGCTGACCACTTACTTTTGTTGTGATTTCATCACACAAAATGTTGTATATGAGGAAGaagttgaaataaataaaatgttgatCTTTTTATATAAATATTGTCTCTAAATCA

Function

NR:

description
leucine-rich repeat neuronal protein 1-like

GO: NA

KEGG:

id description
K24492 LRRN1_2_3; leucine-rich repeat neuronal protein 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610044.2 False 3717 mRNA 0.54 2 62882286 62900930
XM_036983732.1 True 3770 mRNA 0.54 3 62882286 62900930

Neighbor

gene id symbol gene type direction distance location
LOC110528182 LOC106583165 coding downstream 59861 62646982 ~ 62822425 (-)
LOC110528181 LOC106583167 coding downstream 265544 62612769 ~ 62616742 (-)
slc4a8 LOC106583168 coding downstream 292538 62538333 ~ 62589748 (-)
LOC118965401 NA coding downstream 337159 62544984 ~ 62545127 (-)
LOC118965309 LOC106583169 coding downstream 361768 62506239 ~ 62520518 (-)
si:dkey-28n18.9 LOC106583160 coding upstream 82189 62983119 ~ 63008072 (-)
LOC110528994 LOC106583141 coding upstream 227260 63128190 ~ 63142500 (-)
LOC110528195 LOC106565465 coding upstream 389897 63290827 ~ 63297342 (-)
nr1d4b LOC106583303 coding upstream 418210 63319140 ~ 63332492 (-)
calcoco1b calcoco1 coding upstream 563453 63464383 ~ 63537584 (-)
G633715 NA non-coding downstream 513 62840892 ~ 62881773 (-)
G633809 NA non-coding downstream 69366 62811424 ~ 62812920 (-)
G633728 NA non-coding downstream 250125 62631926 ~ 62632161 (-)
G633711 NA non-coding downstream 260142 62621818 ~ 62622144 (-)
G633865 NA non-coding upstream 26625 62927555 ~ 62927951 (-)
G633877 NA non-coding upstream 38739 62939669 ~ 62939896 (-)
G633878 NA non-coding upstream 39425 62940355 ~ 62940557 (-)
G633880 NA non-coding upstream 40659 62941589 ~ 62941908 (-)
G633895 NA non-coding upstream 66715 62967645 ~ 62967914 (-)
G632994 LOC106583176 other downstream 660236 62221272 ~ 62222445 (-)
G632459 NA other downstream 1190642 61691248 ~ 61691644 (-)
G631687 emc3 other downstream 1682848 61198007 ~ 61199438 (-)
G631740 NA other downstream 1691241 61190708 ~ 61191045 (-)
LOC110528212 LOC106583293 other upstream 884842 63785772 ~ 63827547 (-)
LOC110528216 LOC106565449 other upstream 1093586 63993536 ~ 64036771 (-)
G635167 NA other upstream 1131516 64032446 ~ 64035381 (-)
G636055 LOC100380681 other upstream 1417264 64318194 ~ 64326230 (-)

Expression


Co-expression Network