LOC110528994 (LOC106583141)


Basic Information

Item Value
gene id LOC110528994
gene name LOC106583141
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 63128190 ~ 63142500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110528994
ATGGAGGAGGAGCCCTTCCTGATCTTTGCCAATCGTTACTACTTGAGGAAACTCAACTTGGATGGTTCCAActacaccctgctcaaacagGGTCTGAACAATGCCGTGGCGCTGGACTTTGACTACAGACAACAGATGATCTACTGGACAGACGTGACCACTCAGGGCAGCATGATACGACGCATGCACATCAACGGCAGCGATGTACAGGTCCTTCACCGCACATCTCTCAGCAACCCTGATGGTCTAGCTGTTGATTGGGTGGGAGGGAACCTGTACTGGTGTGACAAGGGGCGGGACACCATTGAGGTGTCCAAGCTGACTGGGGCCTACCGGATGGTCCTGGTCAACACCGGTCTGAGGGAACCACGCGCTGTGGCGGTCGACGTACGAAACGGGTACCTGTACTGGTCAGACTGGGGTGACAACCCCCACATAGGGAGGATAGGGATGGACGGCTCCAACAGGACTGATTGTAGAGGACAGGATCACCTGGCCCAACGGCCTCACTCTGGACTTCATCAACGACCGCATCTACTGGGCCGATGCCAGAGAGGACTACATCGAGTTCGCCAGCCTGGACGGAACCAACAGACACACTGTGCTGCGCCAGGACATCCCCCACATCTTTGCCATGACTCTGTTTGAGGAGTACATCTACTGGACCGACTGGGAGACCAAGTCCATCAACAGGTGTCACAAGACCCAGGGCACCAACAAGCCCATGCTGATCAGCACGCTCCACCGGCCCATGGACGTCCACATCTACCACCCTTACCGCCAGCCAGAGGGTATGATGGCCAACCACCCGTGTCAGACAAACAACGGAGGATGCAGTAACCTGTGCCTGCTGTCGCCTGGTGGGGGGTACAACTGTGCCTGTCCCACTAACTTCTACCTGGCTAGTGATGGGAGGCAGTGTATGTCCAACTGCACCGCCAGCCAGttTGTGTGTAAGAACGACAAGTGCATTCCGTTCTGGTGGAAGTGTGACACAGAGGATGATTGTGGGGACCGGTCAGACGAGCCTGCGGAATGCCCTGAGTTCAAGTGCAGGCCCGGCCAGTTCCAGTGTGGTACAGGCAACTGTACCAACCCAGCCTACATCTGTGACGGAGACAACGACTGCCAGGACAACGCTGACGAGACCAACTGTGACATCCACGTGTGTCTGCCCAGTCAGTTTAAGTGTAGCCACCCCAGCCGCTGTATCCCAGGGATCTTCCGCTGTAACGGCCAGGATAactgtggagagggagaggacgagaAAGAGTGTCCGGATGTGACGTGTGCTCCTAACCAGTTCCAGTGTGCCATCACCAAGCGCTGTATCCCTCGTGTCTGGGTGTGTGACAGGGACAATGACTGTGTGGATGGATCTGATGAGCCTGCCAACTGCAcccAGATGACGTGTGGAGTGGATGAGTTCCGCTGTAAGGACTCTGGTCGCTGCATCCCGGCCCGATGGAAGTGTGACGGAGAGGATGACTGTGGAGACGGATCAGACGAACCCAAGGAGGAGTGTgAAGAGAGGACGTGTGAGCCGTACCAGTTCCGCTGTAAGAACAACCGTTGTGTCCCTGGTCGCTGGCAGTGTGACTATGACAACGACTGTGGAGACCACTCTGATGAGGACAAATGTGtgcCGAGGCAGTGTTCAGAGAGTGAGTTTTCCTGTACAAACGGTCGCTGCATCGCCGGGAGGTGGACGTGTGATGGAGACCATGACTGTGCTGATGGATCAGACGAGAATGGCTGTGATGTGAAGTGTGACAGTGATCAGTTCCAGTGTAAGAACAGCCACTGTATCCCCATCCGCTGGCGCTGTGACGCAGACCCTGAAGTAGAAAAGTAactctttctcttctctgtctcagtggGTAGACACTGCCCCCTGGATGAGTTCCAGTGTAACAACACTCTGTGTAAACCCCTGGCCTGGAAGTGTGACGGAGAAGACGACTGTGGAGACAACTCTGATGAGAACCCAGATGATTGCACGAAATTCCAGTGCCCTCCCACAAGGCAGTTCCGCTGCCACAACGACCGTGTCTGCCTGCCATTAGCCAGGCGCTGTGACAGTGTTGACAACTGCGGGGACAACAGTGATGAGATCAACTGTCAGACTCCTCCTACCACGCCAGTCTGTCAGAAGGATGAGTTCCAGTGCTCCAACGGCCGCTGCATCAGCTCCAACCTGCGCTGTGACTACTTCAACAACTGTGAGGACTACGGCTCTGACGAGATCGGCTGCAACAAGAAAGACTCTGCCCTGAATGACTGCCGCAGTAACAGGACAGTGTGTGGCGATGGTGATGAGGCCCATTGTGTGGTGAACGGCTCTGAAGCCTTCTGCGCCTGCAAACTTGGCTTCCAGACCACAGGCAACAACAGATGTGAAGATAAGAATGAGTGTAAGCAGTTTGGAGTGTGTTCCCACACCTGCAACAACACCAAGGGCTCCCACAAGTGCAGCTGCCACAAGTACTTCACCAGGATCAACGACAGCTGCAAGGCTGACATGATCATGTCCTTTCACCTCTGTATCTGCAGGGCCAAGGGCTTCCAGCACCAGAGGATGACTAACGGGGCCATGAACGTAGAGATAGGAAACCCAGCGTACAAGATCTACGAGGTTGAGCCAGACGAGGATGCCGGGGATCTTCTAGACTCAGACTTCACACTGGACCCAGACAAGCCCACCAACTTCACCAACCCAGTGTACGCCACCCTGTACATGGGAGCCCACAACAGCCGCAACTCCCTGGCCAGCACAGATGAGAAGAAGGAGCTTCTGTCACGGGGGGATGAGGAGCCCCTGGTGGACCCGCTAGCATAAACTGTCTATTAGCCTGGGGCGTAACATTCCAAACACACCCCTCTTTTTGCctttgaaagaaaataaacagAAACGGCGTGCACACTGTATAAATTGTACAAAAATCAACCTTTTTGTATGTGATTGCAGTATTATATTTTGTCCTTTTACGATTCCTCTGGTcaaaaatgaacaaaaacattttatagaatacattttttatttactaTTTTTGTCCCTTTACCTAAATAGCCACTACCTCTGTGCACAAGGAAATGGAAGAAGAAAAACATAATTGGAGCAATTTGTTTTGTATGAATTGTAtagagaaaaaaacattgttctATTTAATTTTGTTTGTGTTAATTTTGAGCAGGGGAAGGCGAACTCAGTTTTGTAAGTCAGTACCAATGttgtcttgatgacagttttgtCTGCAGGGGTGTAAGACAGGAATAATACAGTACGATTTGTGTACAACACGTGTAAAATGTCAATACCGGATGGCAACTTATTTCCATATTATTTTCTCAGAAAACTATGTTCATGAAATTGTTTTCTTTCTTGCACAGACAATGTTTTATGGTGTATATACCGTAAGATGTAACGCAGGTCAATATATGTTTGTTTCTATCCTGAAAGGTGTGTAGGGCTCATGTGATGTTAAAATAGCGTAATCAAAGTGTTGTTGAAGCGACTGAGAATGAGTGACTGACTGATTACTGGTGAGATGTGATGATTATGACGATGTTGAAGATTCCAGGCTTGGGAATGCGTCCATATAGTGGGCTGTGGGTGTGCCCAGTTCCCATGTCACGGCAGGTCAGAGGATGCTAACGATGGGACGGACCAGGTATACTGTGAGAAGATGTGTGACACCTTCGCTGAGAAGGTCACCAATCTGCACCCTTTCAGTGGACTGTGGTGTCAGAGGACAAGTGTCTTAGTTACAGCTGTGTGGATGGACATAGAAAGGAGATGGGATAACTAATGGTCTAAGGTATGTTTGTTTTTCGCAGCATTTCCTCATGTGGTTTATGTAAGGGCTTGACTGTCCTCCTGGCCCTGTCAGACGTCAGTACAGATGAATCCTTCTAACCTGAGAAAATGAGTTTTGTGCTTTAATGGTTTTGTAACAGCTCTCTCTGAAGGGCATTaatttctttctttattttggACTGTTACGTAGCGTTTCCCTCCACTGTTCTTCCTTTAGCCGTTTCTGATCATCTGTCTTTTTGTACCCTGCTGCTAACGCTGCCGTTTTGGTTGCCCTGACGTGTCGGTTACCTTGACGTGTCTAAGCTCAGCCACTGTCCCAAAATGCTGCTTCTGTCAGGTGATCAGACATATTTTAATGCATGTGAGAAAAGGCAAACAAATGTTCAAGTAACTAGAATAACAAATCCGAATTTTGCTTACTTGTCAGCAAGTGTTATTTTTGATTTATGCGGCcgcattttatttcattttttaaattgaaatctatttaatttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagaaaGTACAATCATTTTACTTTAAAGAACATTTTTGCAAAATCATACATGCATTCTTGGATTTAAGTTGTTTTTGATTAGTCCTTGTTTTATGAGAAATTACACAGCTTTTATAGTACAAAATGCATGGAGGCTCAAACTTTATTCTGGAAAGAGAATGTTTGTTTTTGGTACTTTCAAGCTAAATAACAGATTGttataaatacaattttaaaaactgTACAGAAAACAA
>TU720689
GTCTGAACAATGCCGTGGCGCTGGACTTTGACTACAGACAACAGATGATCTACTGGACAGACGTGACCACTCAGGGCAGCATGATACGACGCATGCACATCAACGGCAGCGATGTACAGGTCCTTCACCGCACATCTCTCAGCAACCCTGATGGTCTAGCTGTTGATTGGGTGGGAGGGAACCTGTACTGGTGTGACAAGGGGCG

Function

NR:

description
LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110528994 False 4610 mRNA 0.55 21 63128190 63142500
TU720689 True 205 lncRNA 0.55 2 63141919 63142231

Neighbor

gene id symbol gene type direction distance location
si:dkey-28n18.9 LOC106583160 coding downstream 120118 62983119 ~ 63008072 (-)
LOC110528187 LOC106583162 coding downstream 227260 62882286 ~ 62900930 (-)
LOC110528182 LOC106583165 coding downstream 305765 62646982 ~ 62822425 (-)
LOC110528181 LOC106583167 coding downstream 511448 62612769 ~ 62616742 (-)
slc4a8 LOC106583168 coding downstream 538442 62538333 ~ 62589748 (-)
LOC110528195 LOC106565465 coding upstream 148327 63290827 ~ 63297342 (-)
nr1d4b LOC106583303 coding upstream 176640 63319140 ~ 63332492 (-)
calcoco1b calcoco1 coding upstream 321883 63464383 ~ 63537584 (-)
trnar-ucu NA coding upstream 524727 63667227 ~ 63667316 (-)
smug1 smug1 coding upstream 539775 63682275 ~ 63685137 (-)
G633970 NA non-coding downstream 194 63127415 ~ 63127996 (-)
G633946 LOC106583158 non-coding downstream 29691 63087506 ~ 63098499 (-)
G633945 NA non-coding downstream 77726 63043246 ~ 63050464 (-)
G633944 NA non-coding downstream 78101 63042824 ~ 63050089 (-)
G633942 NA non-coding downstream 79385 63041466 ~ 63048805 (-)
G633988 NA non-coding upstream 7822 63150322 ~ 63150560 (-)
G634003 NA non-coding upstream 24691 63167191 ~ 63167411 (-)
G634007 NA non-coding upstream 26842 63169342 ~ 63169596 (-)
G634035 NA non-coding upstream 46347 63188847 ~ 63189087 (-)
G634232 NA non-coding upstream 198728 63341228 ~ 63341463 (-)
LOC118965309 LOC106583169 other downstream 607680 62506239 ~ 62520518 (-)
G632994 LOC106583176 other downstream 906140 62221272 ~ 62222445 (-)
G632459 NA other downstream 1436546 61691248 ~ 61691644 (-)
G631687 emc3 other downstream 1928752 61198007 ~ 61199438 (-)
LOC110528212 LOC106583293 other upstream 643272 63785772 ~ 63827547 (-)
LOC110528216 LOC106565449 other upstream 852016 63993536 ~ 64036771 (-)
G635167 NA other upstream 889946 64032446 ~ 64035381 (-)
G636055 LOC100380681 other upstream 1175694 64318194 ~ 64326230 (-)
LOC110528235 LOC106583273 other upstream 1380014 64521769 ~ 64526166 (-)
LOC118965401 NA coding downstream 596792 62544984 ~ 62545127 (-)
G633975 NA non-coding downstream 10282 63130693 ~ 63131637 (-)

Expression


Co-expression Network