Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110528197 |
| gene name | LOC106583300 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 63371948 ~ 63446380 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: retinoic acid receptor gamma-A-like isoform X2 |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0043401 | steroid hormone mediated signaling pathway | biological_process |
| GO:0048384 | retinoic acid receptor signaling pathway | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003707 | steroid hormone receptor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036983744.1 | False | 1935 | mRNA | 0.56 | 9 | 63371948 | 63446380 |
| XM_036983745.1 | True | 2103 | mRNA | 0.56 | 8 | 63417237 | 63446380 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110528194 | LOC106583304 | coding | upstream | 83014 | 63223818 ~ 63288934 (+) |
| LOC110528193 | dtx3l | coding | upstream | 243917 | 63118564 ~ 63128031 (+) |
| LOC110528191 | LOC106565469 | coding | upstream | 260175 | 63015402 ~ 63111773 (+) |
| LOC118965311 | NA | coding | upstream | 359390 | 62988481 ~ 63012558 (+) |
| LOC110528188 | LOC106583159 | coding | upstream | 360109 | 63008145 ~ 63011839 (+) |
| LOC110527135 | hoxc13 | coding | downstream | 92510 | 63538890 ~ 63544471 (+) |
| LOC110528199 | hoxc12 | coding | downstream | 107677 | 63554057 ~ 63558322 (+) |
| LOC110528202 | hoxc11 | coding | downstream | 123423 | 63569803 ~ 63573270 (+) |
| LOC110528201 | hoxc10 | coding | downstream | 135534 | 63576700 ~ 63586725 (+) |
| LOC110528203 | hoxc9 | coding | downstream | 150081 | 63596461 ~ 63601432 (+) |
| G634126 | NA | non-coding | upstream | 35845 | 63335673 ~ 63336103 (+) |
| G634102 | NA | non-coding | upstream | 74710 | 63296722 ~ 63297238 (+) |
| G634044 | NA | non-coding | upstream | 176360 | 63195356 ~ 63195588 (+) |
| G634039 | NA | non-coding | upstream | 180396 | 63191345 ~ 63191552 (+) |
| G634018 | NA | non-coding | upstream | 189465 | 63182259 ~ 63182483 (+) |
| G634297 | NA | non-coding | downstream | 40833 | 63487213 ~ 63487460 (+) |
| G634300 | NA | non-coding | downstream | 47194 | 63493574 ~ 63493798 (+) |
| G634343 | NA | non-coding | downstream | 99275 | 63545655 ~ 63545958 (+) |
| G634536 | NA | non-coding | downstream | 153633 | 63600013 ~ 63602289 (+) |
| G633613 | NA | other | upstream | 442249 | 62929398 ~ 62929699 (+) |
| LOC110528175 | LOC105017014 | other | upstream | 1029983 | 62325429 ~ 62342019 (+) |
| G632817 | NA | other | upstream | 1042887 | 62245920 ~ 62329061 (+) |
| G632809 | LOC100194703 | other | upstream | 1140599 | 62230515 ~ 62231349 (+) |
| G632776 | NA | other | upstream | 1231957 | 62139516 ~ 62139991 (+) |
| LOC110528206 | hoxc6 | other | downstream | 173973 | 63619980 ~ 63622602 (+) |
| LOC110528222 | LOC106583247 | other | downstream | 749661 | 64099788 ~ 64201232 (+) |
| G635332 | LOC100380681 | other | downstream | 871820 | 64318200 ~ 64326259 (+) |
| G635635 | NA | other | downstream | 1338836 | 64785216 ~ 64786393 (+) |
| G635769 | NA | other | downstream | 1605264 | 65051644 ~ 65052156 (+) |
