LOC110528197 (LOC106583300)


Basic Information

Item Value
gene id LOC110528197
gene name LOC106583300
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 63371948 ~ 63446380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983744.1
agagagagcaagaagagagagagagtgtgtgagtgactgagcaagaaagtgagagagggggagagagcgagaaaagaAAAAAGCGAGAGGAAGGCGGAATGCAACAGGCCGTGCTTATTCTTCGCTCTGAGAGGGACTTCTGACTGACCAACTGAACTCCACTACACTTCTCCTCTGTTCACCTCTCCTTTCACTCTCTTCCTTCATCCGTCTGTCTGTGCTCCAGACACAATCCAGATCCGGCCCCCAGGACCAGCTCCAGTAAGACTGCCTAAGAGTGACAAGGGACCGGAACTATCCTGGACCTAAATTATCCTCTCAAGGCCATGGCAACCAACAGGGAACGGCAGGTGAGTCACATGACTGGCTTTTCACCTGCCGTTTACCCCTTCGCCTTCAACTCCATGAGGAGCCACTCACCTTTCGACCTTCTGGCCAATAGCAGCCTCTTTGGACGTTTTGGGGCAGACCTTCCGAAAGAAATGGCTGCATTGTcAGTGGAGACCCAGAGCACCAGCTCTGAGGAGATGGTGCCCAGTtcaccctctccaccccctcctccccgcATTTACAAGCCCTGTTTCGTGTGCCAGGACAAGTCCTCTGGCTACCACTACGGGGTCAGCTCCTGTGAGGGTTGCAAGGGATTCTTCCGGCGCAGTATTCAGAAGAACATGGTGTATACCTGCCACCGAGACAAGAACTGTCAGATCAACAAGGTGACCCGTAATCGCTGTCAGTACTGCCGGCTGCAAAAGTGCTTTGAGGTTGGCATGTCCAAAGAAGCGGTGCGTAATGACAGgaacaagaagaagaaggatgtgaaggaggaggtggtGTTGCTGGAGAGCTATGAGCTCAGTGGAGAACTGGAAGAGCTAGTCAACAAAGTCAGCAAGGCCCACAAAGATACCTTTCCCTCACTTGTCCAGCTGGGCAAATACACTACAAACTCCAGTGCAGACCACCGTGTACAGTTGGATCTGGGGCTGTGGGATAAGTTCAGTGAACTCTCCACCAAGTGCATCATCAAGATAGTGGAGTTTGCCAAGCGCCTGCCAGGCTTCACCACCCTCACCATCGCTGACCAGATCACTCTCCTCAAATCAGCCTGTCTGGATATACTGatgCTGAGGATCTGCACTCGCTACACTCCGGAGCAGGACACAATGACCTTCTCCGACGGGCTGACCCTGAACCGGACCCAGATGCACAACGCAGGCTTTGGCCCTCTCACAGAGCTGGTGTTTGCCTTTGCTGGCCAGCTGCTGCCTCTGGAGATGGACGACACAGAAACCGGCCTCCTCAGCGCCATCTGCTTGATCTGTGGAGACCGTATGGACCTGGAGGAGCCCCAGAAGGTGGACAAGCTACAGGAACCCCTCCTGGAGGCCCTGAAAATCTACGCCCGCCGCAGACGCCCCAACAAGCCCCACATGTTCCCCCGCATGCTGATGAAGGTCACCGACCTCAGGGGCATCAGCACCAAGGGTGCTGAGAGAGCCATCACTCTGAAGATGGAGATCCCAGGCCCCATGCCTCCTCTGATCAGGGAGATGCTGGAGAACCCCGAGGCCTTTGAGGACAGCAGCGACTCTGGGGACAGCGCCTCCGCCCCCCCTGCCATCCAAGCCatcaagaaagagagggaggagaagagcctcgaggaggaagatgaggatgaggaggacgaGTGGGGGgacgaggagagggagaggggggcggACAGCGATGGGGAGCCCTGGGGGGAGGCTGCAGCGGCAGAAGCGGTGTCCCAGAAAGGGGCAACTGGGAGATCCCAGTGAGAGTGACATAGTGATGCACTCTGACCCATTCTCGTCACCTCCTATTCCACCACCCTCAGACAGACCAACACTCCCTGTCCTATTCTTACAAGCCCACCAAGTCATCTACCCACATGAGCAGCCCATCCTA
>XM_036983745.1
AGAACAGGCAGTTGGTTCGCTCCACAGTGTCACTGGCTGTGTGTGAGAGGCCCAGAGAGCTGAGGAGAAGGGGGTGTTTGGATCAGTTACAGCCGCAAAGGAGAGACACtcagaggggagagagggctCGAGAGACTGACgactgagtgtgagagagagggaagcagtcTGGAGCTCGAGAGAAAAGCTCAAGAGAAGACCAGAACCAAAGAAAGAAAGCTGTTCAACTCTAAgaccaacatacacacacacacagagtgagagagagagagagagagagagagagagagagagagagagagaggttggggggTGGAAGGCAGTCGAGGACTTTATCAGAGTGGAACCGACAACAACCACAAGCCTGGAGAGCCAGTCCTTCTCTGAGCTGCtcttgttttgttctgtgtggAAATTCCTTTGAGACGTCACTGCTAGCTGAGCTCAGCTGAACAACCACAGCCAAGAAAGACTGTTGTGGTTGCTTGTCAAACTATAGTGTGTGTGGAGATAGAGCGAGGAGCATGTTTGACTGTATGGAGGCTCTTGCCCCCCGGCCGCTTTTTGACGTGTCCACTCAGGGGGCTTGCATGTTGGGCAAGGCCACCCCCTTCTTCCCTGGTCTGGACCCCTTTGCCTGGGCTGGGATGGCCAGTGTTCAGTcAGTGGAGACCCAGAGCACCAGCTCTGAGGAGATGGTGCCCAGTtcaccctctccaccccctcctccccgcATTTACAAGCCCTGTTTCGTGTGCCAGGACAAGTCCTCTGGCTACCACTACGGGGTCAGCTCCTGTGAGGGTTGCAAGGGATTCTTCCGGCGCAGTATTCAGAAGAACATGGTGTATACCTGCCACCGAGACAAGAACTGTCAGATCAACAAGGTGACCCGTAATCGCTGTCAGTACTGCCGGCTGCAAAAGTGCTTTGAGGTTGGCATGTCCAAAGAAGCGGTGCGTAATGACAGgaacaagaagaagaaggatgtgaaggaggaggtggtGTTGCTGGAGAGCTATGAGCTCAGTGGAGAACTGGAAGAGCTAGTCAACAAAGTCAGCAAGGCCCACAAAGATACCTTTCCCTCACTTGTCCAGCTGGGCAAATACACTACAAACTCCAGTGCAGACCACCGTGTACAGTTGGATCTGGGGCTGTGGGATAAGTTCAGTGAACTCTCCACCAAGTGCATCATCAAGATAGTGGAGTTTGCCAAGCGCCTGCCAGGCTTCACCACCCTCACCATCGCTGACCAGATCACTCTCCTCAAATCAGCCTGTCTGGATATACTGatgCTGAGGATCTGCACTCGCTACACTCCGGAGCAGGACACAATGACCTTCTCCGACGGGCTGACCCTGAACCGGACCCAGATGCACAACGCAGGCTTTGGCCCTCTCACAGAGCTGGTGTTTGCCTTTGCTGGCCAGCTGCTGCCTCTGGAGATGGACGACACAGAAACCGGCCTCCTCAGCGCCATCTGCTTGATCTGTGGAGACCGTATGGACCTGGAGGAGCCCCAGAAGGTGGACAAGCTACAGGAACCCCTCCTGGAGGCCCTGAAAATCTACGCCCGCCGCAGACGCCCCAACAAGCCCCACATGTTCCCCCGCATGCTGATGAAGGTCACCGACCTCAGGGGCATCAGCACCAAGGGTGCTGAGAGAGCCATCACTCTGAAGATGGAGATCCCAGGCCCCATGCCTCCTCTGATCAGGGAGATGCTGGAGAACCCCGAGGCCTTTGAGGACAGCAGCGACTCTGGGGACAGCGCCTCCGCCCCCCCTGCCATCCAAGCCatcaagaaagagagggaggagaagagcctcgaggaggaagatgaggatgaggaggacgaGTGGGGGgacgaggagagggagaggggggcggACAGCGATGGGGAGCCCTGGGGGGAGGCTGCAGCGGCAGAAGCGGTGTCCCAGAAAGGGGCAACTGGGAGATCCCAGTGAGAGTGACATAGTGATGCACTCTGACCCATTCTCGTCACCTCCTATTCCACCACCCTCAGACAGACCAACACTCCCTGTCCTATTCTTACAAGCCCACCAAGTCATCTACCCACATGAGCAGCCCATCCTA

Function

NR:

description
PREDICTED: retinoic acid receptor gamma-A-like isoform X2

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983744.1 False 1935 mRNA 0.56 9 63371948 63446380
XM_036983745.1 True 2103 mRNA 0.56 8 63417237 63446380

Neighbor

gene id symbol gene type direction distance location
LOC110528194 LOC106583304 coding upstream 83014 63223818 ~ 63288934 (+)
LOC110528193 dtx3l coding upstream 243917 63118564 ~ 63128031 (+)
LOC110528191 LOC106565469 coding upstream 260175 63015402 ~ 63111773 (+)
LOC118965311 NA coding upstream 359390 62988481 ~ 63012558 (+)
LOC110528188 LOC106583159 coding upstream 360109 63008145 ~ 63011839 (+)
LOC110527135 hoxc13 coding downstream 92510 63538890 ~ 63544471 (+)
LOC110528199 hoxc12 coding downstream 107677 63554057 ~ 63558322 (+)
LOC110528202 hoxc11 coding downstream 123423 63569803 ~ 63573270 (+)
LOC110528201 hoxc10 coding downstream 135534 63576700 ~ 63586725 (+)
LOC110528203 hoxc9 coding downstream 150081 63596461 ~ 63601432 (+)
G634126 NA non-coding upstream 35845 63335673 ~ 63336103 (+)
G634102 NA non-coding upstream 74710 63296722 ~ 63297238 (+)
G634044 NA non-coding upstream 176360 63195356 ~ 63195588 (+)
G634039 NA non-coding upstream 180396 63191345 ~ 63191552 (+)
G634018 NA non-coding upstream 189465 63182259 ~ 63182483 (+)
G634297 NA non-coding downstream 40833 63487213 ~ 63487460 (+)
G634300 NA non-coding downstream 47194 63493574 ~ 63493798 (+)
G634343 NA non-coding downstream 99275 63545655 ~ 63545958 (+)
G634536 NA non-coding downstream 153633 63600013 ~ 63602289 (+)
G633613 NA other upstream 442249 62929398 ~ 62929699 (+)
LOC110528175 LOC105017014 other upstream 1029983 62325429 ~ 62342019 (+)
G632817 NA other upstream 1042887 62245920 ~ 62329061 (+)
G632809 LOC100194703 other upstream 1140599 62230515 ~ 62231349 (+)
G632776 NA other upstream 1231957 62139516 ~ 62139991 (+)
LOC110528206 hoxc6 other downstream 173973 63619980 ~ 63622602 (+)
LOC110528222 LOC106583247 other downstream 749661 64099788 ~ 64201232 (+)
G635332 LOC100380681 other downstream 871820 64318200 ~ 64326259 (+)
G635635 NA other downstream 1338836 64785216 ~ 64786393 (+)
G635769 NA other downstream 1605264 65051644 ~ 65052156 (+)

Expression


Co-expression Network