LOC110528204 (hoxc8)


Basic Information

Item Value
gene id LOC110528204
gene name hoxc8
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 63601448 ~ 63606367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610063.2
attatcttgaaaaAGGATaacatgctcactaacagggatgtaaactgatttgtgcacaaaattggagcgaaatacactttttgtgtgtatggaaaattgctgggatcttttatttcagcacattGTAGCACAGTGCAACAATATTCTCTTGGAACACTGGCACTTCCCCTGTCGAATGGCAATCTCCATTACTCTAAAATAGCCTCGATTCAATCCAACCCATACCCCCATGTGTCTTTATGACTTTGTCTTAGGCTACATATGACTACTGTATACATGTCCGTCATTTCAAGTTTTTTACTATTGGGGCCATATGGCAAAAATGAGTAGGACCCCTGCGATTTATAGAGATTTTATTAGTTGTAACAGACGTTTGAATTATTGGCTACTAATTAGGCCTATGGTTTAAAATCTATCGCCGATCCAATCTTCCACTATCACGATATACCATATGTGTAGGCCTAGCATATATCTCACGAAATAATAGCCTCTGATGGTTATGTGAAAGTACTGTAGGTCTAGAACAAGTCCAATTAGTGCAGTACAAATCACACAAAAAGGCCACTGGATGTCGCTGTTGACTAAGTATTTAACATTTTCGATCCCATGTAGCCTGTTTACCTTTTGTATGGGAACCTTTGGGGGACTGGAGGGAGAAAATGTTCTTAAAGGCTGTTCTAGGGTTACTAGTCACAAATGTAGGGATGAACAACTCATGCGTAGAGCTGAACAACCAACAACGTCCGTTTTCTCCAAAACCTATAATTAATCGTCTGCATATAACTTTTACGGATAATAATTATCTGTCTTCTCTAGCCTACACTATAGGCAGTAGTATTTCTGTAATATGGcaatattgtattatttttttttaagtatcgaTATTCCAATTGATTTAGCCTATGTCTATCTACAACCATTTATTTTGTCAGTgggtctctatctctgtcttggTGTTGTTATGAAGAACAATTATTTTAGTTATAACTGATCAATTATATTTTACCGTTGTGTTAATCGATAGCCTATGTTTAGTGTTAAGTAGCATAAGGTTGGCTACATTTACTATGGGCTCAAAAGAACATCAGAACATGTAGGCCTAACTTAATGTCAAAATGTATAGTCTGTAATTGTGAaacatattttcatattttttattatgtttgcTCTAAGTAAAGACCAAAAATTCAACCAAACacctttatttcacttttattttcaTTAATAATCATGTACAATAATTAATCAATGTCATCAACGACTATTAAGCATTACAAAATAATTCTGGTAACATAAAAAAACATATGAAACCAAATGTCTAGGCTGTATTATTAGCAAATACAATTTTGCTGCATGTAAACATTTTCGATTAAAATATTTTAATTGAAATAGGCtaggctacaaaacatttcacaACCACTGGGTGTGCGCGTACATGTGTGCGTGAATGGAAATCATTGACGTAATGCCTTCACATAGTCAGGGGTCGAGGTTTTTGTCACTTTCTTAAGGGCAATAAACGGTAGGCCTATTAACTAGGGAGGAAGGTGTAGACAATGTGTATAAGACTAAACAAAATGATAGTTGACACAGAGTCTAAGCTACATAAAATATTCAAAATGTTATTGTATTGTAAAGCAAAATGCACAGTCCCTTCCCGCTTGCCTGTTTCATGGTTTTAGACGTCCGAGTTCTCAATGAGAATGGGAGGGGGTTGAAGGTTGgtggtgagagaggagggggtcgATGTCGTGAAGGGGGGGTGGGGTAAAAACGAAACGCTAGTGACTGTGTGTCGGAGGGGCTAGCCGCTTTAGCATCAACCATGCACGTCATAAGAAGCTGATTTGAAGCTCCAAAAGGAAAAAGCCAATAAAAACCAAAGGACTTCCTTTGGTAGCAGGGCAGTGTTTTAACAAGAGAGAGGTGGATAAGGAAAAAGGCTTTATTATCTTATTCCTTAAACCTGTCTCTATGATTTCGTGGTTTCGTTCGTTGTATGTGTGGGGTTTGGAACAAAACTAAGGCAATACTTGGAATTGTCGTAAACTAAGTTATTCCACTGTAACATTGTAAACCGTAAAACATGAGCTCCTATTTCGTGAACCCTCTCTTTTCCAAGTGCAAAGGCAGTGAAACGTTGGGACCAACTTACTACGACTGCAGGTTTCCTCAAGGCGTCACCCGGAGACACACGCTGGTGTACGGTGCGGGAGCGGCGGCGACGGGATTTCAGCACCCGCCCGCCCGATCACAGCACCCGCCCGATACGGCCTTCTTTCACCATAGGACGCCGGCGATCTCCACATCAGGCTACCAGCAGAATCAATGCGCCTTGGCTTGTCATGGAGATGGCACTACATTGTATGGATACGAAGCCCTTCCAAAACAAACGCTTTATGGTACCCAACAAGAGGCAAGCGTGGCGCTATACCCATACTGTAAATCGTCAAATGGCACTAACCTCGGAGAAGGACAAGGCCACCTAAATCAAAACCAGTCTCCTAGTCTCATGTTTCCATGGATGAGACCGCACGCCCCCGGAAGACGGAGTGGCCGACAGACCTACAGTCGATACCAAACACTGGAGTTGGAGAAGGAATTTCTATTCAACCCTTACCTCACCCGTAAACGTCGGATCGAGGTGTCTCACGCTTTAGGGCTGACGGAGCGGCAGGTGAAGATTTGGTTCCAAAACCGACGGATGAAGTGGAAAAAGGAGAACATCAAGGACCAATTTCCGTGTCAAAGagtagagacagagaacgagggTAATGGtgatggtgagggagagggagagggcaagggCGATGATGAAGGCAATGATGAtggtgaaggagaagagggagacaaAAAGGAAACGGGAGTGGAAGAGGACAAAGAGTGATTTTTATTGATCTTTATTTTTATGGTTAAATGGCTTAAAAGTTGAAAGATGGTCCCGGGAGAAGGAGATCACATTTTATCACAACCGTTTTACTGAGTCAACAAGATGAGAGAAAAATAACTGTTCTGGATTACAGCAAATGGCTCTCTCTATGAGGATAATAACTACTAATAATGTTTAACTTATACAGTCTCCAAACGCTGCAAAGGTTCTCATAACATAAAGACCTGAAGCACTTGCAAATCATATTGTTACGCATATGTCCATATCACAGAATGCACAAGAGGATAGGATGGCTGGAAATGTTTAAATGTTCCATCAATGTTGTCATTCGAGGAGAAGGGTTCATTATTAATACAAATTCTTTGTACTTTTTTTTCCTAGAGTATTTTTTatgtggatttgtgtgtgtgtattgggatgATCGAAGTTTTATTTTATTCATAACTGCCAATTCCAAAGGTGGGGAAAAAGGGTGGCAGTTGACCCAGTGGTTAAGATCGTTCTGCCAGTAAGGGATATTTCATGTTGTTGTGTCTCAAATTTCAATCTATACGCCTATTATTTTCACAAATATAGGCCTACtattgtgtattgtaatgtagcCTATATTTTGTAAACATTGTGAGCGCTGTCTGTTCGTTTGATCGCAAATGGTCCCGGGCCTATTCAATCCGatatcaaaacaaaacaaatcgGAAATTCGACATATGTAGAATATTTCTTGATTCTTGACCTAATTCTGGAAAATGTAAGATTCTAGAAGGCAGCAATAAGTTATTTTTATGTGATTATTAGCCTATATTCGTTTTAATAGACCGGGAACTCTTTACTACCTAAGTAGATCTAGATGCACTTAGAGGTGATGTTGAAATCTACCAAGAAAACGGTTTTGTCATTAGCAATGTTGATCTATACATTCTCACTGAAGGGACAAGCCAGTGCAATGGTAGGCCTATAACACATTATATTGCATTTGATTGCACGATACTTATGGTGCTGATTTTGTGGCGGTATAGTAGGACCTATATTGATCTTCCAAACAAATGTCTCTGCGCCATACTACCTAGTCAGCTAAAGAACGGTGTAACAAGAAATTGGTGTCCCAACAACTTAAACTGCCTTAAGTAatgcacatttatttaaccaaTATGTTATAATTGAACAAAGAATTGTACTTCAGCGTTTAAATATCATTAGCCTACAACATTGTGCTGATGCAATAGACTCGTTTTTTATTGCACTGAATATGACCTCTGTATGTCTTCGTATTTCTTGTTGTATAAATCAGCTTGATTTCTTATGTTTAAAGTTAAAGGAGGGTATGTTGGTTGCGAGTGCACACACACTTGATTGGCATGAACATGTTCAAATAAATGGAAAAAATCTGAA
>TU721278
GCAATAAGTTATTTTTATGTGATTATTAGCCTATATTCGTTTTAATAGACCGGGAACTCTTTACTACCTAAGTAGATCTAGATGCACTTAGAGGTGATGTTGAAATCTACCAAGAAAACGGTTTTGTCATTAGCAATGTTGATCTATACATTCTCACTGAAGGGACAAGCCAGTGCAATGGTAGGCCTATAACACATTATATTGCATTTGATTGCACGATACTTATGGTGCTGATTTTGTGGCGGTATAGTAGGACCTATATTGATCTTCCAAACAAATGTCTCTGCGCCATACTACCTAGTCAGCTAAAGAACGGTGTAACAAGAAATTGGTGTCCCAACAACTTAAACTGCCTTAAGTAatgcacatttatttaaccaaTATGTTATAATTGAACAAAGAATTGTACTTCAGCGTTTAAATATCATTAGCCTACAACATTGTGCTGATGCAATAGACTCGTTTTTTATTGCACTGAATATGACCTCTGTATGTCTTCGTATTTCTTGTTGTATAAATCAGCTTGATTTCTTATGTTTAAAGTTAAAGGAGGGTATGTTGGTTGCGAGTGCACACACACTTGATTGGCATGAACATGTTCAAATAAATGGAA

Function

symbol description
hoxc8 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including anterior/posterior pattern specification; negative regulation of transcription by RNA polymerase II; and skeletal system morphogenesis. Located in microtubule cytoskeleton and nucleoplasm.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610063.2 False 4279 mRNA 0.39 3 63601448 63606367
TU721278 True 613 lncRNA 0.35 1 63605745 63606357

Neighbor

gene id symbol gene type direction distance location
LOC110528203 hoxc9 coding upstream 16 63596461 ~ 63601432 (+)
LOC110528201 hoxc10 coding upstream 14723 63576700 ~ 63586725 (+)
LOC110528202 hoxc11 coding upstream 28178 63569803 ~ 63573270 (+)
LOC110528199 hoxc12 coding upstream 43126 63554057 ~ 63558322 (+)
LOC110527135 hoxc13 coding upstream 56977 63538890 ~ 63544471 (+)
LOC110528209 NA coding downstream 7037 63613404 ~ 63648659 (+)
LOC110528206 hoxc6 coding downstream 13613 63619980 ~ 63622602 (+)
LOC110528207 hoxc5 coding downstream 17703 63624070 ~ 63627576 (+)
LOC110528205 hoxc4bb coding downstream 28630 63634997 ~ 63637638 (+)
LOC110528211 NA coding downstream 90695 63696465 ~ 63702027 (+)
G634343 NA non-coding upstream 55490 63545655 ~ 63545958 (+)
G634300 NA non-coding upstream 107650 63493574 ~ 63493798 (+)
G634297 NA non-coding upstream 113988 63487213 ~ 63487460 (+)
G634126 NA non-coding upstream 265345 63335673 ~ 63336103 (+)
G634541 NA non-coding downstream 4026 63610393 ~ 63610687 (+)
G634548 NA non-coding downstream 11066 63617433 ~ 63617684 (+)
G634555 NA non-coding downstream 28225 63634592 ~ 63634872 (+)
G634556 NA non-coding downstream 31442 63637809 ~ 63638027 (+)
G634561 NA non-coding downstream 35212 63641579 ~ 63641794 (+)
G633613 NA other upstream 671749 62929398 ~ 62929699 (+)
LOC110528175 LOC105017014 other upstream 1259483 62325429 ~ 62342019 (+)
G632817 NA other upstream 1272387 62245920 ~ 62329061 (+)
G632809 LOC100194703 other upstream 1370099 62230515 ~ 62231349 (+)
G632776 NA other upstream 1461457 62139516 ~ 62139991 (+)
LOC110528222 LOC106583247 other downstream 589674 64099788 ~ 64201232 (+)
G635332 LOC100380681 other downstream 711833 64318200 ~ 64326259 (+)
G635635 NA other downstream 1178849 64785216 ~ 64786393 (+)
G635769 NA other downstream 1445277 65051644 ~ 65052156 (+)
G634536 NA non-coding upstream 3456 63600013 ~ 63602289 (+)

Expression


Co-expression Network