prph (prph)


Basic Information

Item Value
gene id prph
gene name prph
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 64296947 ~ 64303825 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610098.2
ACTCCTCAGTCGGACGTCCTGTTGCTTTACTCCCTGCTCCGAGGCACCTTTGGCTCCAACAAACAGAGACAGCAAGAAGGAGAGCTAGACAGATAGATAGTAAGAATTAGAGACCACCAAACCTCAACCATGAGCCACCCTTCAATGATCCACCATTCAGGCCGCGCCTCCACTTCTTATCGCCGCACGTTCGGGGTCCCCAACCCCATCTCCATTTCCTCCTACTCTCCTTCCTACTCATCTGTCAACTCCCGCAAGCCAATGTCCAGCGGGCGCTACATGCACTCCATATCGCCCGTGGTGTCCTCTCGCTCCTCcaactaccaccaccagcagCGGCAGCGCTCTAGCACCCAGCTGCCCCGTCTCACCTACGAAAAGGTGGACTTCCAGCTGGCCGATGCGGTCAACGCCGAGTTCCTGGCCACCCGCAGCAACGAGAAGGTGGAGCTGCAGGACCTCAACGACCGCTTCGCCAGCTTCATTGACAAGGTGCACTACCTGGAGCAGCAGAACAGCGGGCTGCAGCAAGAGCTGAGCCAGTTCAAGGGCCAGCTGCAGGAGGGAAAGCCCAACCGGGCCACCGAGCTCTTCCAGGAGGAATTGAGGGAGCTGAGGCGCCAGCTGGACCACGtgggcaaggagagggaccagTACCAGGTTGAGAGGGACAACCTGGCCGAAGACATGAACCTCCTCAAACAGAGGCTGGATGAGGAGAATCAGAAGAGGGCTGAGGCTGAGAGTAACCTGATTGTCTTCCGCAAAGACGTGGATGATGCCACTCTGTCTCGCCTGGAGCTGGAGAGGAAGATCGAGTCTCTGATGGATGAGATTGAGTTCCTCAAAAAGCTGCATGAAGAGGAGATCCAGGACGTGCAGGTGAGTGTCCAGACCCAGCAGATGAAGATGGAGGTGGAACAGACTGCCAGGCCTGACCTGGCCGCTGCCCTCAAGGACATCAGGGCCCAGTACGAGAACATTGCCTCCAAGAACATGCATGAGTCTGAGGAGTGGTACAAGTCCAAGTTTGCTGACCTGACGGACTCTGCCAAGCGTAACACTGATGCTCTGAGGCAGGCCAAGCAGGAGCAAAATGAGCATAGGAGGCAGATGCAGTCCCTCAACTGTGAGATCGATGCACTGAAGAGCACGAACGAGGCTCTGCTGAGGCAGATGCGTGAGATGGAAGGCCAGTTTGGCGTGGAGGCCAATAACTACCAGGACAACGTGGGTCGCCTGGAGGAGGAGATGCACCACCTGAAGGACGAGATGGCCCGCCACTTGAGGGAGTACCAGGACCTGCTCAATGTCAAGATGGCCCTGGACATAGAGATCGCCACTTACCGCAAGctgctggagggagaggagagcagGATTattgttcctatgcatccctccCAGTACGGCCGTAGTGGTGATAGGGCCTATGACCACACCCCAGACACCCCTAAAAGGAAGCCTGTGGTGATTAAGACAGTGGAGACTCGTGATGGAGAggtggtgaaggagtcaaagacggagaaggagaggagcgAGATGGATGGCAGCCATGGCAGGAATGAAAGGGACCATGATAGGAATGGCAGGGATGACTAGAATAGTTAGGTACCAATCGCCTGTTCCAGATTTAGATGTAACAATACAACACAAAAGATGGAAACAAGAAATGCAAGaagtaaaataaatagtttaaagCTCCTTAATTGCTTCTCACCTTTCATCCTTTAACAGATATTTTCTGTTGAGCAGAGAGCCTGTAGTAGATATTTGTGCAATGTTAAAACTTGAAGAAATCTCTTAGATAGCAAACTTAGTCACAGGATGTGACCGTGGGGTTACTTTTAATAACCGATCATTCCTCATTGAAGAAAAAAGACAAAGACAGCCTTACATGAGCATACACAGACACGATAGTGCTATCAAGCAGGGAATGAACGCAAACTTGAGTGGATCCTGCTGCaaatcaattttttttattgataCATCACTTGAGGCCTTAATTTACATTGAAATCCCTTACATAACATGTTTTGTAGCTGAACTTATCATTCACCAAGGGGAAATAGAAAGTGGCGTAACAAAGCAACAGGGTTTTAGTGATCCCTCTCTGACATATTCTCTCCAGTAGAAGGACACAATCAGATGTAGCTTTGAGAGACAGTGGACATCAATAAGGAACAGTTTGAAAGGGAAAATGTCTCTGTATAGTGCAATGGAACTCTCAATGTCAAATATCAGGCCAGAGAGGGACCACCAATGGGATTGATGGGTGAATACTGTCCTTGCTGCACCACATACTCTGCACATTGCGCTCTGCTCAAAATACAAAAAGCTGACAGGGAAATGTGCTATGCAAACATATGAGAATGTGTGTTTCTGACAGCTATAgacaattttaaaaaatacaaatgcaaTTAAAGTCAACTGGAACAGA

Function

symbol description
prph Predicted to enable structural molecule activity. Acts upstream of or within tissue regeneration. Predicted to be located in type III intermediate filament. Is expressed in nervous system. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 1. Orthologous to human PRPH (peripherin).

NR:

description
plasticin-like

GO:

id name namespace
GO:0045098 type III intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07607 PRPH; peripherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610098.2 True 2437 mRNA 0.50 9 64296947 64303825

Neighbor

gene id symbol gene type direction distance location
LOC110528997 timeless coding downstream 10011 64272734 ~ 64286936 (-)
LOC110528224 LOC106583281 coding downstream 44540 64231750 ~ 64252407 (-)
LOC110528217 LOC106583286 coding downstream 213589 64050664 ~ 64083358 (-)
LOC110528216 LOC106565449 coding downstream 260176 63993536 ~ 64036771 (-)
LOC110528215 LOC106583288 coding downstream 334184 63900937 ~ 63962763 (-)
LOC110528227 LOC100380681 coding upstream 14375 64318200 ~ 64322309 (-)
LOC110528229 LOC105016959 coding upstream 21801 64325626 ~ 64327630 (-)
LOC110528226 pmel coding upstream 35027 64338852 ~ 64346260 (-)
LOC110528233 LOC106583275 coding upstream 146064 64449889 ~ 64489135 (-)
LOC110528235 LOC106583273 coding upstream 217944 64521769 ~ 64526166 (-)
G635246 NA non-coding downstream 152190 64137001 ~ 64144757 (-)
G635244 NA non-coding downstream 156096 64133204 ~ 64140851 (-)
G635187 NA non-coding downstream 258120 64038556 ~ 64038827 (-)
G636086 LOC107662719 non-coding upstream 48516 64352341 ~ 64352752 (-)
G636111 NA non-coding upstream 93243 64397068 ~ 64397505 (-)
G636139 NA non-coding upstream 141659 64445484 ~ 64451097 (-)
G636219 NA non-coding upstream 241128 64544953 ~ 64545212 (-)
G636224 NA non-coding upstream 247425 64551250 ~ 64551773 (-)
G635167 NA other downstream 261566 64032446 ~ 64035381 (-)
LOC110528212 LOC106583293 other downstream 504167 63785772 ~ 63827547 (-)
si:dkey-28n18.9 LOC106583160 other downstream 1288907 62983119 ~ 63008072 (-)
LOC118965309 LOC106583169 other downstream 1776437 62506239 ~ 62520518 (-)
G636055 LOC100380681 other upstream 14369 64318194 ~ 64326230 (-)
LOC110528239 LOC106583268 other upstream 367025 64669731 ~ 64689634 (-)
G636532 LOC106583345 other upstream 830425 65134250 ~ 65134745 (-)
G636533 LOC106583345 other upstream 831713 65135538 ~ 65135795 (-)

Expression


Co-expression Network