LOC110528227 (LOC100380681)


Basic Information

Item Value
gene id LOC110528227
gene name LOC100380681
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 64318200 ~ 64322309 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610100.2
GACCGTCATAAGCAGTATAAAAAGCCCCACCCTGTCGCATTGCTTAAACTTCTCACATTAGACTCCTAAAGGTCCCTCTGTGAGAGTTGGTCGTAAATCTACGGTTTCTTATTTTTATCTTTACTGCTCTTTTAAACACCTAATCTTAGACATGCGTGAGTGTATCTCTGTCCACGTGGGCCAGGCTGGTGTCCAGATCGGCAATGCATGCTGGGAGCTGTACTGTCTTGAGCATGGGATCCAGCCCGATGGCAAGATGCCCAGTGACAAGACCATTGGAGGAGGAGATGACTCCTTTAACACCTTCTTCAGTGAGACTGGAGCTGGAAAGCACGTCCCCAGGGCTGTGTTTGTAGACCTGGAGCCCACTGTCATCGATGAGGTGCGTTCTGGAACTTACCGCCAGCTCTTCCACCCTGAGCAGCTGATCACTGGGAAGGAGGATGCAGCCAACAACTACGCCCGTGGGCATTACACCATCGGCAAAGAGATTATTGACTTGGTACTGGACAGGATCCGCAAACTGgctgaCCAGTGCACTGGCCTCCAGGGCTTCCTGGTCTTCCACAGCTTCGGAGGTGGCACCGGTTCTGGTTTCACCTCCCTGTTGATGGAGCGCTTGTCTGTTGACTATGGCAAGAAGTCCAAACTTGAGTTCTCCATCTACCCAGCTCCCCAGGTGTCCACAGCCGTTGTTGAGCCCTACAACGCCATCCTGACCACCCACACCACCCTGGAGCACTCTGATTGTGCTTTCATGGTAGACAATGAGGCCATCTATGACATCTGCCGTAGGAACCTTGATATCGAGCGTCCCTCCTACACTAATCTTAACAGGTTGATCAGTCAGATTGTGTCCTCCATCACTGCTTCCCTCCGATTCGATGGTGCCCTCAATGTTgatctgacagagttccagaccaACTTGGTGCCCTACCCCCGTATCCACTTCCCGCTGGCCACCTATGCCCCAGTGATCTCGGCAGAGAAGGCTTACCATGAGCAGCTGACTGTTTCAGAGATCACAAACGCCTGTTTTGAGCCATGTAATCAGATGGTGAAATGTGACCCACGTCATGGAAAGTACATGGCCTGCTGTCTGCTGTACCGTGGCGACGTTGTGCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAAACAAAACGCTCCATCCAGTTTGTAGACTGGTGCCCAACTGGTTTCAAGGTTGGTATCAACTACCAGCCACCAACTGTGGTACCTGGTGGAGATCTGGCCAAGGTCCAGAGGGCAGTGTGCATGCTTAGCAACACCACTGCAGTGGCAGAGGCCTGGGCCCGTCTTGACCACAAGTTTGACCTGATGTACGCCAAGCGTGCTTTTGTGCACTGGTACGTAGGTGAgggtatggaggagggagagttcTCTGAGGCCAGGGAGGACATGGCTGCCCTGGAGAAAGATTATGAAGAGGTGGGAGCAGATAGTGTGgagggggaggatgagggagaagaATACTAAACTATTAGGATCAGGAATTTTCAGCCTGTCAACACATTCAACCTTTTTCCTCAACATTCCTTCTAAAACCATTTTTTTGCTGTCCCTTTGTAACCTTGACTTTTAAATGTTGCTCTCTCCTTTAAGCAATAAAAGTCTATTTTAAATGTT

Function

NR:

description
PREDICTED: tubulin alpha-1C chain

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610100.2 True 1651 mRNA 0.51 4 64318200 64322309

Neighbor

gene id symbol gene type direction distance location
prph prph coding downstream 14375 64296947 ~ 64303825 (-)
LOC110528997 timeless coding downstream 31264 64272734 ~ 64286936 (-)
LOC110528224 LOC106583281 coding downstream 65793 64231750 ~ 64252407 (-)
LOC110528217 LOC106583286 coding downstream 234842 64050664 ~ 64083358 (-)
LOC110528216 LOC106565449 coding downstream 281429 63993536 ~ 64036771 (-)
LOC110528229 LOC105016959 coding upstream 3317 64325626 ~ 64327630 (-)
LOC110528226 pmel coding upstream 16543 64338852 ~ 64346260 (-)
LOC110528233 LOC106583275 coding upstream 127580 64449889 ~ 64489135 (-)
LOC110528235 LOC106583273 coding upstream 199460 64521769 ~ 64526166 (-)
LOC110528237 LOC106583271 coding upstream 334602 64656911 ~ 64666144 (-)
G635246 NA non-coding downstream 173443 64137001 ~ 64144757 (-)
G635244 NA non-coding downstream 177349 64133204 ~ 64140851 (-)
G635187 NA non-coding downstream 279373 64038556 ~ 64038827 (-)
G636086 LOC107662719 non-coding upstream 30032 64352341 ~ 64352752 (-)
G636111 NA non-coding upstream 74759 64397068 ~ 64397505 (-)
G636139 NA non-coding upstream 123175 64445484 ~ 64451097 (-)
G636219 NA non-coding upstream 222644 64544953 ~ 64545212 (-)
G636224 NA non-coding upstream 228941 64551250 ~ 64551773 (-)
G635167 NA other downstream 282819 64032446 ~ 64035381 (-)
LOC110528212 LOC106583293 other downstream 525420 63785772 ~ 63827547 (-)
si:dkey-28n18.9 LOC106583160 other downstream 1310160 62983119 ~ 63008072 (-)
LOC118965309 LOC106583169 other downstream 1797690 62506239 ~ 62520518 (-)
LOC110528239 LOC106583268 other upstream 348541 64669731 ~ 64689634 (-)
G636532 LOC106583345 other upstream 811941 65134250 ~ 65134745 (-)
G636533 LOC106583345 other upstream 813229 65135538 ~ 65135795 (-)
G636571 LOC106583344 other upstream 912175 65209760 ~ 65236881 (-)

Expression


Co-expression Network