LOC110528229 (LOC105016959)


Basic Information

Item Value
gene id LOC110528229
gene name LOC105016959
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 64325626 ~ 64327630 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983819.1
CAGGCTGGAGTCCAGATGGGCAATGCATGCTGGGAACTCTACTGTCTGGAGCACGGGATCCAGATGCCCAGTGACAAGACCATCGGAGGAGAGGACGACTCCTTCAACACCTTCTTCAGTGAGACTGGAGCTGGCAAGCATGTCCCCAGGGCTGTGTTTGTAGATCTGGAGCCACTGTCATTGGTACGATCACTTTGTCTTGAAAAAATGATGATGACACTATATCTTTCTCCAGATGAGGTGCGTTCTGGAACTTACCGCCAGCTCTTCCACCCTGAGCAGCTGATCACTGGGAAGGAGGATGCAGCCAACAACTACGCCCGTGGGCATTACACCATCGGCAAAGAGATTATTGACTTGGTACTGGACAGGATCCGCAAACTGgctgaCCAGTGCACTGGCCTCCAGGGCTTCCTGGTCTTCCACAGCTTCGGAGGTGGCACCGGTTCTGGTTTCACCTCCCTGTTGATGGAGCGCTTGTCTGTTGACTATGGCAAGAAGTCCAAACTTGAGTTCTCCATCTACCCAGCTCCCCAGGTGTCCACAGCCGTTGTTGAGCCCTACAACGCCATCCTGACCACCCACACCACCCTGGAGCACTCTGATTGTGCTTTCATGGTAGACAATGAGGCCATCTATGACATCTGCCGTAGGAACCTTGATATCGAGCGTCCCTCCTACACTAATCTTAACAGGTTGATCAGTCAGATTGTGTCCTCCATCACTGCATCCCTCCGATTCGATGGTGCCCTCAATGTTgatctgacagagttccagaccaACTTGGTGCCCTACCCCCGTATCCACTTCCCGCTGGCCACCTATGCCCCAGTGATCTCGGCAGAGAAGGCTTACCATGAGCAGCTCTCAGTGTCTGAGATCACAAATGCTTGCTTTGAGCCAGCAAATCAGATGGTGAAATGTGACCCACGTCACGGCAAGTACATGGCCTGCTGTCTGCTGTACCGTGGCGACGTTGTGCCCAAAGATGTAAATGCTGCCATTGCCACCATCAAAACAAAACGCTCCATCCAGTTTGTAGACTGGTGCCCAACTGGTTTCAAGGTTGGTATCAACTACCAGCCACCAACTGTGGTACCTGGTGGAGATCTGGCCAAGGTCCAGAGGGCAGTGTGCATGCTTAGCAACACCACTGCAGTGGCAGAGGCCTGGGCCCGTCTTGACCACAAGTTTGACCTGATGTACGCCAAGCGTGCTTTTGTGCACTGGTACGTAGGTGAgggtatggaggagggagagttcTCTGAGGCCAGGGAGGACATGGCTGCCCTGGAGAAAGATTATGAAGAGGTGGGCATCGACTCcattgagggagagggagaggaggagggagaggagtattaaatatttcttaattcctATGCCAAATTCACACATCACTAGGTGAACCAGAGCTAAGAATGACTTAATTATTTTTTTCTATAATTCTGCCTTGAACAACAAACATCATGAAGTAGCAGGGTGGTAAGGTGTAGCCCACAAGTCTTTTAAAATGTGCTTACTCACAAGGCTGATGTCCTTGCTTCATCTGTGCGTTTGTGGCGAGTGCCCAATAAAATCATCAATGAAGGTTA
>XM_036983820.1
CAGGCTGGAGTCCAGATGGGCAATGCATGCTGGGAACTCTACTGTCTGGAGCACGGGATCCAGATGCCCAGTGACAAGACCATCGGAGGAGAGGACGACTCCTTCAACACCTTCTTCAGTGAGACTGGAGCTGGCAAGCATGTCCCCAGGGCTGTGTTTGTAGATCTGGAGCCACTATATCTTTCTCCAGATGAGGTGCGTTCTGGAACTTACCGCCAGCTCTTCCACCCTGAGCAGCTGATCACTGGGAAGGAGGATGCAGCCAACAACTACGCCCGTGGGCATTACACCATCGGCAAAGAGATTATTGACTTGGTACTGGACAGGATCCGCAAACTGgctgaCCAGTGCACTGGCCTCCAGGGCTTCCTGGTCTTCCACAGCTTCGGAGGTGGCACCGGTTCTGGTTTCACCTCCCTGTTGATGGAGCGCTTGTCTGTTGACTATGGCAAGAAGTCCAAACTTGAGTTCTCCATCTACCCAGCTCCCCAGGTGTCCACAGCCGTTGTTGAGCCCTACAACGCCATCCTGACCACCCACACCACCCTGGAGCACTCTGATTGTGCTTTCATGGTAGACAATGAGGCCATCTATGACATCTGCCGTAGGAACCTTGATATCGAGCGTCCCTCCTACACTAATCTTAACAGGTTGATCAGTCAGATTGTGTCCTCCATCACTGCATCCCTCCGATTCGATGGTGCCCTCAATGTTgatctgacagagttccagaccaACTTGGTGCCCTACCCCCGTATCCACTTCCCGCTGGCCACCTATGCCCCAGTGATCTCGGCAGAGAAGGCTTACCATGAGCAGCTCTCAGTGTCTGAGATCACAAATGCTTGCTTTGAGCCAGCAAATCAGATGGTGAAATGTGACCCACGTCACGGCAAGTACATGGCCTGCTGTCTGCTGTACCGTGGCGACGTTGTGCCCAAAGATGTAAATGCTGCCATTGCCACCATCAAAACAAAACGCTCCATCCAGTTTGTAGACTGGTGCCCAACTGGTTTCAAGGTTGGTATCAACTACCAGCCACCAACTGTGGTACCTGGTGGAGATCTGGCCAAGGTCCAGAGGGCAGTGTGCATGCTTAGCAACACCACTGCAGTGGCAGAGGCCTGGGCCCGTCTTGACCACAAGTTTGACCTGATGTACGCCAAGCGTGCTTTTGTGCACTGGTACGTAGGTGAgggtatggaggagggagagttcTCTGAGGCCAGGGAGGACATGGCTGCCCTGGAGAAAGATTATGAAGAGGTGGGCATCGACTCcattgagggagagggagaggaggagggagaggagtattaaatatttcttaattcctATGCCAAATTCACACATCACTAGGTGAACCAGAGCTAAGAATGACTTAATTATTTTTTTCTATAATTCTGCCTTGAACAACAAACATCATGAAGTAGCAGGGTGGTAAGGTGTAGCCCACAAGTCTTTTAAAATGTGCTTACTCACAAGGCTGATGTCCTTGCTTCATCTGTGCGTTTGTGGCGAGTGCCCAATAAAATCATCAATGAAGGTTA
>XM_036983821.1
CAGGCTGGAGTCCAGATGGGCAATGCATGCTGGGAACTCTACTGTCTGGAGCACGGGATCCAGATGCCCAGTGACAAGACCATCGGAGGAGAGGACGACTCCTTCAACACCTTCTTCAGTGAGACTGGAGCTGGCAAGCATGTCCCCAGGGCTGTGTTTGTAGATCTGGAATATCTTTCTCCAGATGAGGTGCGTTCTGGAACTTACCGCCAGCTCTTCCACCCTGAGCAGCTGATCACTGGGAAGGAGGATGCAGCCAACAACTACGCCCGTGGGCATTACACCATCGGCAAAGAGATTATTGACTTGGTACTGGACAGGATCCGCAAACTGgctgaCCAGTGCACTGGCCTCCAGGGCTTCCTGGTCTTCCACAGCTTCGGAGGTGGCACCGGTTCTGGTTTCACCTCCCTGTTGATGGAGCGCTTGTCTGTTGACTATGGCAAGAAGTCCAAACTTGAGTTCTCCATCTACCCAGCTCCCCAGGTGTCCACAGCCGTTGTTGAGCCCTACAACGCCATCCTGACCACCCACACCACCCTGGAGCACTCTGATTGTGCTTTCATGGTAGACAATGAGGCCATCTATGACATCTGCCGTAGGAACCTTGATATCGAGCGTCCCTCCTACACTAATCTTAACAGGTTGATCAGTCAGATTGTGTCCTCCATCACTGCATCCCTCCGATTCGATGGTGCCCTCAATGTTgatctgacagagttccagaccaACTTGGTGCCCTACCCCCGTATCCACTTCCCGCTGGCCACCTATGCCCCAGTGATCTCGGCAGAGAAGGCTTACCATGAGCAGCTCTCAGTGTCTGAGATCACAAATGCTTGCTTTGAGCCAGCAAATCAGATGGTGAAATGTGACCCACGTCACGGCAAGTACATGGCCTGCTGTCTGCTGTACCGTGGCGACGTTGTGCCCAAAGATGTAAATGCTGCCATTGCCACCATCAAAACAAAACGCTCCATCCAGTTTGTAGACTGGTGCCCAACTGGTTTCAAGGTTGGTATCAACTACCAGCCACCAACTGTGGTACCTGGTGGAGATCTGGCCAAGGTCCAGAGGGCAGTGTGCATGCTTAGCAACACCACTGCAGTGGCAGAGGCCTGGGCCCGTCTTGACCACAAGTTTGACCTGATGTACGCCAAGCGTGCTTTTGTGCACTGGTACGTAGGTGAgggtatggaggagggagagttcTCTGAGGCCAGGGAGGACATGGCTGCCCTGGAGAAAGATTATGAAGAGGTGGGCATCGACTCcattgagggagagggagaggaggagggagaggagtattaaatatttcttaattcctATGCCAAATTCACACATCACTAGGTGAACCAGAGCTAAGAATGACTTAATTATTTTTTTCTATAATTCTGCCTTGAACAACAAACATCATGAAGTAGCAGGGTGGTAAGGTGTAGCCCACAAGTCTTTTAAAATGTGCTTACTCACAAGGCTGATGTCCTTGCTTCATCTGTGCGTTTGTGGCGAGTGCCCAATAAAATCATCAATGAAGGTTA

Function

NR:

description
tubulin alpha chain

GO: NA

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983819.1 False 1595 mRNA 0.51 3 64325626 64327630
XM_036983820.1 False 1550 mRNA 0.52 3 64325626 64327630
XM_036983821.1 True 1544 mRNA 0.52 3 64325626 64327630

Neighbor

gene id symbol gene type direction distance location
LOC110528227 LOC100380681 coding downstream 3317 64318200 ~ 64322309 (-)
prph prph coding downstream 21801 64296947 ~ 64303825 (-)
LOC110528997 timeless coding downstream 38690 64272734 ~ 64286936 (-)
LOC110528224 LOC106583281 coding downstream 73219 64231750 ~ 64252407 (-)
LOC110528217 LOC106583286 coding downstream 242268 64050664 ~ 64083358 (-)
LOC110528226 pmel coding upstream 11222 64338852 ~ 64346260 (-)
LOC110528233 LOC106583275 coding upstream 122259 64449889 ~ 64489135 (-)
LOC110528235 LOC106583273 coding upstream 194139 64521769 ~ 64526166 (-)
LOC110528237 LOC106583271 coding upstream 329281 64656911 ~ 64666144 (-)
LOC110528239 LOC106583268 coding upstream 342101 64669731 ~ 64689634 (-)
G635246 NA non-coding downstream 180869 64137001 ~ 64144757 (-)
G635244 NA non-coding downstream 184775 64133204 ~ 64140851 (-)
G635187 NA non-coding downstream 286799 64038556 ~ 64038827 (-)
G636086 LOC107662719 non-coding upstream 24711 64352341 ~ 64352752 (-)
G636111 NA non-coding upstream 69438 64397068 ~ 64397505 (-)
G636139 NA non-coding upstream 117854 64445484 ~ 64451097 (-)
G636219 NA non-coding upstream 217323 64544953 ~ 64545212 (-)
G636224 NA non-coding upstream 223620 64551250 ~ 64551773 (-)
G635167 NA other downstream 290245 64032446 ~ 64035381 (-)
LOC110528216 LOC106565449 other downstream 328387 63993536 ~ 64036771 (-)
LOC110528212 LOC106583293 other downstream 532846 63785772 ~ 63827547 (-)
si:dkey-28n18.9 LOC106583160 other downstream 1317586 62983119 ~ 63008072 (-)
LOC118965309 LOC106583169 other downstream 1805116 62506239 ~ 62520518 (-)
G636532 LOC106583345 other upstream 806620 65134250 ~ 65134745 (-)
G636533 LOC106583345 other upstream 807908 65135538 ~ 65135795 (-)
G636571 LOC106583344 other upstream 906854 65209760 ~ 65236881 (-)

Expression


Co-expression Network