LOC110528226 (pmel)


Basic Information

Item Value
gene id LOC110528226
gene name pmel
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 64338852 ~ 64346260 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610099.2
TCTCTCCGGGTGGTGTGTTGTTGGGTTTTTAAGACTAGGACGAGGGTTAGGAACTGGGCAAAGAAGGACACACACAACCACGCACAATGAAGACTGTACTGATAGTACTAATGTTGGCTCTCTTGTCAGCAGCTTTAGGAGCAAAGCCTAAAACTCGCTTTACACACTACCGCTCATGGAACTCAGGAATATATCCAGTGTGGAAAGATGGGGACTCCCGATACAGAGACTGTTGGACTGGTGGAGAAGTTACATTCGATGTGAAAAATGATGCACCCACCCTGACTGGCGCAAAGGCAACCTTTAACATCGACCTTCGCTTCCCATCAAACCAGACAGTGCTTCCTGATGGACAGGTGGTGTGGGCGCGTAACTGCACTGTCAATGGAACACAGTACCGTCAAGGCCAGGCTGTGTATCCCGACCAGGTCTCTGGTCCTTCAGGAGAGTACAGCGGAGTCTTCCCTGATGGCACCCCCTTCACTGGGACCGCAGACAGGAAACCACACTACGTGTTTGTGTGGAAGACATGGGGACGTTACTGGCAGGTGGCGGATgggacctcctcctctctcaccatcGGCACAGACAATGTGCCCCTAGGCTCTTACAACATGGAAGTAGTCATCTACCACTGCCGTGGCAAGGACAAGTTCATCCCTCTGGGCTATGCCTCCACAACCTTCTCCATCACAGACCAGATCCCCTTCGCAGTGTCACTGACTCAAATTAACGATGTGAACGAGGCTGACCAGAGCTTCATCCAGAATCGGGCCATTGCCTTTAGCATCAGCCTCCACGACCCCAGCCAGTACCTCAGCGCCTCAGACGTCACCTTTAactgggactttggtgacaacaGTGGCACCCTCATCTCCAGGGAGCACCAGGTCACACATACATACCTCAACACCGGCACATACAGGCCTCAGGTGGTCCTGATGGCAAGCATCCCCAACGGCTGTGACACACCTGCAGACCCCACCGCTGCCAGCCCCACTGTGATGCCTATGGATCCCTCCGGTGCTCCTGCCGTTGTTATGGTGGTCTCTACCCCAAGGGCAGCTCCAGCTGACATCGCCCTGGATGTGCCTGCCTCTGAAGTTGCCCCTGCTGAGGCTGCCGACACAGCTGCAGCTGACGCTGATGCCACAGACACAGATGCAGCTGCAGCCGAAAACCCAGCCATAGCTGAAAGCACAGACTCAGCCGCAGCCGAAACTGCAGTCGAAGCCGGTGCCACAGCTGAAGCAGCACCCACAGCTGACGACGCAGCCGCAGAGGGAGTCGAGGTGGTTGCCTCAGCAGCAGATGATCCAGCCGTCATCCCTGCAACAGAGGACCCTGCCTCTGACCCTGCAGTAGAAGCCGATGCCACAGCAGAAGACACGGCTGCTGCAGCCATTGAGGTCCCTGCCCCTGTGCCAGCTGTGGAGGGAGCCACAGCTGCCTCCGTCACCCCAGCAACTGAAGAGGCTGTTGATGCTGATGCAGCTGCCGAAACAGCAGTGGTAGATGCGACGGCTGCAGATGTGCCCGCCATCAACGCTGCTGCTTCAGTTgctccagttgcagagggagaagAGGCCACAGTGGATCTGACGGCCACAGTCCTCTCAGAGGTCCCAGCTGTAGCCACCGTTACACCCGTGGAGGAGGCAACCGTAGTTGCCGATGCTGAGGTGGTGGCTGAGGTTGCGGCTGCAACAGAGGTGGTCCAGGTCGAGACGGTGGCCCCTGCTGTTAACGTCATTGTTCTTGCCGCCACGGAGGCTGCAGctgtggtggaggtggtgccaGCTGAACTTGCTCTTGAGGCCGAGGCAGAGCTAGAAGCAGAGGTCGTAGAGACAGTGAATGAGGTTGCAGCTGATGCCACTGCAGTGCCAGCAGCAGTGACTGCTCCAGTGGAGAGTGAGGTAGCAGCAGAGGCTGAGATAGAGGCAGGCACAGAGACACAGGTGGCTCTTGTTGTGGCTAAAAGACAGGCTCCTGAACTTACAGCGGCTGACAACTGTATGATATACCGCTATGGCTCCTTCTCGACCGCTGTGGACGTTGTCCAGGGTATTGAGAGTGTGGAGATCACCCAGGTGGCCAACGTGGTGTCTCTGGCCACTGAGGTTGTGCAGAATGCTGTGGACCTGACCATCACCTGCCAGGGGAGCCTGCCCAATGAAGTGTGCACCATCATCTCGGATGAAGACTGCATCACGCCCGTGGAGACCATCTGTAGCAACGTGACACCCTCCCCAGATTGTCAGATGATCCTTCGCCAGTTCTTCAACGACTCTGGAGTGTTCTGCATCAACGTGTCCCTGACCAATGATGTTAGTCTGGCTGTGGCCAGTGCTAAAGTTAGTGTGACTGTGGGCTCCAACTCCTCCCCAGCAGGCACTGTGGCCGCGGTTCTGGGTGTCATGGTCCTTGTCTGTGTTGCTGGTGCCATTGCTTTGACCTACAAGCGGTTTAACCAATACCGTCCACTGAGGGAGGACTCAACTGGCGGCAGCATGGGAAGCTCTGGAAACACGTCTGTGCCAATGCTGCTGTGGAACCTTCTGAGCCGACAGTCACCAGGAGAAAGAAGCCCACTGCTTCAGGGAAGGGTGGTGTGAAAACTCATAACCATCTGCACTGATAAAGCACCCACTCATGCATGTTAACACTTAAATATCACTCAGACGCACACATCCACTCAGTAACTCTGAAATACGCATATACATGTTAACACATTGcagactcagacacacacagtcaccctaATGCAGAGACAAAATGCAACAAGAACAAGCAGTTGTATTCTGTATTGTTACACTGAAAGCAACTTTAATAAAAAACTATAATGTATTAGAAATGTATACATTTTCAACACAGAACAAAAAAGAAACCCCAAAAGCCAAAATAATGTGTTTGTTTCTGCCGTTGCATCACTTGTGACaaaatattatatttattttGACCCACATACTTTTTTTATTTAAGAAAAGAAAAACTGATGAACGTTTACAAAAATGTAGCAATTTATGCTGTGCTTTTTCTGTTATTACTCACTCTTCCTTAGAATGTAATCATAATGACTGCCTCTTGGAACCTTCCAACACATTCATTTTCTTTGTTAACTGGTCTAATTTGAATTGCCCAAAAAAATCACAGCACTGTGATATAACATATATAATGTCACCCCAAAAACAAGCATTAAAATGTAAATTATGTAAGAATCTTCAACTACCGGTATACCTTCACATTTTCCTAGTCCTATCTAAGCTTGCATTCTTGCTTTTGTCCTCCATGCCCTTACTAAACTAGCACTGATTTTCCTGTCCAAAGATCAAGAAATGTAAGCGCGTTGAGTGGTTTATTATTGATGTGAGTCTTGATGTCTATTCAGAATTGAACTGTTTTGGGTGTTATCGTTACATTGCCACCAATAAAGAGGAGGAACCCATTCCTGAAG

Function

symbol description
pmel Enables identical protein binding activity. Involved in melanosome organization. Located in Golgi apparatus; cytoplasmic vesicle; and endoplasmic reticulum membrane.

NR:

description
melanocyte protein PMEL-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610099.2 True 3457 mRNA 0.51 12 64338852 64346260

Neighbor

gene id symbol gene type direction distance location
LOC110528229 LOC105016959 coding downstream 11222 64325626 ~ 64327630 (-)
LOC110528227 LOC100380681 coding downstream 16543 64318200 ~ 64322309 (-)
prph prph coding downstream 35027 64296947 ~ 64303825 (-)
LOC110528997 timeless coding downstream 51916 64272734 ~ 64286936 (-)
LOC110528224 LOC106583281 coding downstream 86445 64231750 ~ 64252407 (-)
LOC110528233 LOC106583275 coding upstream 103629 64449889 ~ 64489135 (-)
LOC110528235 LOC106583273 coding upstream 175509 64521769 ~ 64526166 (-)
LOC110528237 LOC106583271 coding upstream 310651 64656911 ~ 64666144 (-)
LOC110528239 LOC106583268 coding upstream 323471 64669731 ~ 64689634 (-)
LOC110528240 LOC106583267 coding upstream 350248 64696508 ~ 64726237 (-)
G635246 NA non-coding downstream 194095 64137001 ~ 64144757 (-)
G635244 NA non-coding downstream 198001 64133204 ~ 64140851 (-)
G635187 NA non-coding downstream 300025 64038556 ~ 64038827 (-)
G636086 LOC107662719 non-coding upstream 6081 64352341 ~ 64352752 (-)
G636111 NA non-coding upstream 50808 64397068 ~ 64397505 (-)
G636139 NA non-coding upstream 99224 64445484 ~ 64451097 (-)
G636219 NA non-coding upstream 198693 64544953 ~ 64545212 (-)
G636224 NA non-coding upstream 204990 64551250 ~ 64551773 (-)
G636055 LOC100380681 other downstream 12622 64318194 ~ 64326230 (-)
G635167 NA other downstream 303471 64032446 ~ 64035381 (-)
LOC110528216 LOC106565449 other downstream 341613 63993536 ~ 64036771 (-)
LOC110528212 LOC106583293 other downstream 546072 63785772 ~ 63827547 (-)
si:dkey-28n18.9 LOC106583160 other downstream 1330812 62983119 ~ 63008072 (-)
G636532 LOC106583345 other upstream 787990 65134250 ~ 65134745 (-)
G636533 LOC106583345 other upstream 789278 65135538 ~ 65135795 (-)
G636571 LOC106583344 other upstream 888224 65209760 ~ 65236881 (-)

Expression


Co-expression Network