LOC110528233 (LOC106583275)


Basic Information

Item Value
gene id LOC110528233
gene name LOC106583275
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 64449889 ~ 64489135 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610109.2
CAATCTTAGCCAATGGAGATAGATTACGACACGGAGGAGCAGAGATATATAAAGAGCTATTTTAGGACGTGCTTGCACACTTTTCAATGACACATCTTCTCATTCGCACATATGGACTTAATTGTTATCAGATATGGCAACCAAAACAACAACCATAGCATAAAAACGGGTTATGCTTAAAATCGATAGATAGGCTAAAGTAAAATACTGAGAAAACCCACTAGGACGGACGCACCTTCCTACGTTTACTGCTGTCTTACAATACAACCGTTTTAAGAGGCGACTATTTGAGTAGTTGCATATCATTGGTACCTTTGCAAGGTAAGGAAACACAGGTTAAGACAAGCAACATTTCAGGGGAGGGGATAGCGCGAGCAGAAAGTTCTATAGCCTCACCAGTCATCATCATGCCGAGGTATAACTTTTTTCTGTGTTTGATGGTTTATGTTTGTctgggactgtctgggagtgacGAACCTAACCTTTTTCTACCACCAACGAGCGAGATGCCCACGGACGCCGGGCTGTCGCTCCTTGATGAGGAGGCAGGCGCTCACGAATGTTCAGCATGCGTTTGGAGAGAGCAAAGTAAAGTCCTGAGGCTGGAAACCATCAAATCTCAGATCCTGAGCAAGCTGCGGCTCAAGCAGGCTCCTAACATTAGTCGGGAGGTGGTGAACCAGCTGCTCCCAAAGGCGCCCCCGCTCCAGCAGCTTCTGGACCATCACGACTTCCAGGGAGACGCGTCCTCCCAGGATGAGTTTATGGAGGAGGACGAATATCACGCCACTACAGAGTCCGTCATCACTATGGCCTCGGAGCCGGAGCCCTTGGTGCAGGTGGACGGCAAGCCCAGCTGCTGCTTCTTTAAGTTCAGTCCCAAACTCATGTTCACCAAGGTGCTGAAGGCTCAGCTGTGGGTGTACCTTCGGCCGCTGCAGCAGACTTCCACCGTCTACCTGCAGATCCTCAGGCTGAAGCCTGTCACGGAGCAGGGCAGCCGCCACATCCGCATCCGCTCATTGAAGATCGAGCTCAATTCACGTGTGGGCCACTGGCAGAGTATCGACTTCAAGCACGTGCTGCAGAACTGGTTCAAGCAGCCGCACACCAACTGGGGAATTGACATCAATGCCTTCGACGAGAGCGGCAACGACCTGGCAGTGACCTCGCTGAGACCAGGGGAGGAAGGGCTGCAGCCGTTCCTGGAGGTTAAGGTTCTCGAGACGACCAAACGTTCCCGACGTAACCTGGGACTGGACTGTGACGAGCACTCCACCGAGTCCCGCTGCTGCCGCTACCCGCTGACGGTGGACTTTGAGGCCTTCGGCTGGGACTGGATCATTGCTCCTAAGCGCTATAAGGCCAACTACTGCTCGGGCCAGTGTGAATACATGTTCATGCAGAAGTACCCACACACCCACCTGGTACAACACGCCAACCCCAGAGGCTCAGCAGGGCCCTGCTGCACCCCCACCAAGATGTCACCCATCAACATGCTCTATTTCAATGACAAGCAGCAGATCATCCACGGCAAGATCCCTGGTATGGTGGTAGACAGGTGTGGCTGCTCTTAGGCCCAACGGAAGTCATGCATACTCATGCACACCCAACTCTGCATTATTTCCACCCAGAACCCTGACTGAGACCTCCTCTGGCAGCAgactctcactcccctctccccagactctcactcccctctctccagactctcactcctctcccctctctccagacTCTcactcc
>XM_021610110.2
CAATCTTAGCCAATGGAGATAGATTACGACACGGAGGAGCAGAGATATATAAAGAGCTATTTTAGGACGTGCTTGCACACTTTTCAATGACACATCTTCTCATTCGCACATATGGACTTAATTGTTATCAGATATGGCAACCAAAACAACAACCATAGCATAAAAACGGGTTATGCTTAAAATCGATAGATAGGCTAAAGTAAAATACTGAGAAAACCCACTAGGACGGACGCACCTTCCTACGTTTACTGCTGTCTTACAATACAACCGTTTTAAGAGGCGACTATTTGAGTAGTTGCATATCATTGGTACCTTTGCAAGGTAAGGAAACACAGGTTAAGACAAGCAACATTTCAGGGGAGGGGATAGCGCGAGCAGAAAGTTCTATAGCCTCACCAGTCATCATCATGCCGAGGTATAACTTTTTTCTGTGTTTGATGGTTTATGTTTGTctgggactgtctgggagtgacGAACCTAACCTTTTTCTACCACCAACGAGCGAGATGCCCACGGACGCCGGGCTGTCGCTCCTTGATGAGGAGGCAGGCGCTCACGAATGTTCAGCATGCGTTTGGAGAGAGCAAAGTAAAGTCCTGAGGCTGGAAACCATCAAATCTCAGATCCTGAGCAAGCTGCGGCTCAAGCAGGCTCCTAACATTAGTCGGGAGGTGGTGAACCAGCTGCTCCCAAAGGCGCCCCCGCTCCAGCAGCTTCTGGACCATCACGACTTCCAGGGAGACGCGTCCTCCCAGGATGAGTTTATGGAGGAGGACGAATATCACGCCACTACAGAGTCCGTCATCACTATGGCCTCGGAGCCGGAGCCCTTGGTGCAGGTGGACGGCAAGCCCAGCTGCTGCTTCTTTAAGTTCAGTCCCAAACTCATGTTCACCAAGGTGCTGAAGGCTCAGCTGTGGGTGTACCTTCGGCCGCTGCAGCAGACTTCCACCGTCTACCTGCAGATCCTCAGGCTGAAGCCTGTCACGGAGCAGGGCAGCCGCCACATCCGCATCCGCTCATTGAAGATCGAGCTCAATTCACGTGTGGGCCACTGGCAGAGTATCGACTTCAAGCACGTGCTGCAGAACTGGTTCAAGCAGCCGCACACCAACTGGGGAATTGACATCAATGCCTTCGACGAGAGCGGCAACGACCTGGCAGTGACCTCGCTGAGACCAGGGGAGGAAGGGCTGCCGTTCCTGGAGGTTAAGGTTCTCGAGACGACCAAACGTTCCCGACGTAACCTGGGACTGGACTGTGACGAGCACTCCACCGAGTCCCGCTGCTGCCGCTACCCGCTGACGGTGGACTTTGAGGCCTTCGGCTGGGACTGGATCATTGCTCCTAAGCGCTATAAGGCCAACTACTGCTCGGGCCAGTGTGAATACATGTTCATGCAGAAGTACCCACACACCCACCTGGTACAACACGCCAACCCCAGAGGCTCAGCAGGGCCCTGCTGCACCCCCACCAAGATGTCACCCATCAACATGCTCTATTTCAATGACAAGCAGCAGATCATCCACGGCAAGATCCCTGGTATGGTGGTAGACAGGTGTGGCTGCTCTTAGGCCCAACGGAAGTCATGCATACTCATGCACACCCAACTCTGCATTATTTCCACCCAGAACCCTGACTGAGACCTCCTCTGGCAGCAgactctcactcccctctccccagactctcactcccctctctccagactctcactcctctcccctctctccagacTCTcactcc

Function

NR:

description
growth/differentiation factor 11-like isoform X2

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K22679 GDF11; growth differentiation factor 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610109.2 False 1746 mRNA 0.53 3 64449889 64489135
XM_021610110.2 True 1743 mRNA 0.53 3 64449889 64489135

Neighbor

gene id symbol gene type direction distance location
LOC110528226 pmel coding downstream 103629 64338852 ~ 64346260 (-)
LOC110528229 LOC105016959 coding downstream 122259 64325626 ~ 64327630 (-)
LOC110528227 LOC100380681 coding downstream 127580 64318200 ~ 64322309 (-)
prph prph coding downstream 146064 64296947 ~ 64303825 (-)
LOC110528997 timeless coding downstream 162953 64272734 ~ 64286936 (-)
LOC110528235 LOC106583273 coding upstream 32634 64521769 ~ 64526166 (-)
LOC110528237 LOC106583271 coding upstream 167776 64656911 ~ 64666144 (-)
LOC110528239 LOC106583268 coding upstream 180596 64669731 ~ 64689634 (-)
LOC110528240 LOC106583267 coding upstream 207373 64696508 ~ 64726237 (-)
LOC118965386 NA coding upstream 246799 64735934 ~ 64736697 (-)
G636111 NA non-coding downstream 52384 64397068 ~ 64397505 (-)
G636086 LOC107662719 non-coding downstream 97137 64352341 ~ 64352752 (-)
LOC110528224 LOC106583281 non-coding downstream 197587 64231750 ~ 64252407 (-)
G635246 NA non-coding downstream 305132 64137001 ~ 64144757 (-)
G636219 NA non-coding upstream 55818 64544953 ~ 64545212 (-)
G636224 NA non-coding upstream 62115 64551250 ~ 64551773 (-)
G636229 NA non-coding upstream 64964 64554099 ~ 64554298 (-)
G636230 NA non-coding upstream 67869 64557004 ~ 64557294 (-)
G636232 NA non-coding upstream 70635 64559770 ~ 64595363 (-)
G636055 LOC100380681 other downstream 123659 64318194 ~ 64326230 (-)
G635167 NA other downstream 414508 64032446 ~ 64035381 (-)
LOC110528216 LOC106565449 other downstream 452650 63993536 ~ 64036771 (-)
LOC110528212 LOC106583293 other downstream 657109 63785772 ~ 63827547 (-)
si:dkey-28n18.9 LOC106583160 other downstream 1441849 62983119 ~ 63008072 (-)
G636532 LOC106583345 other upstream 645115 65134250 ~ 65134745 (-)
G636533 LOC106583345 other upstream 646403 65135538 ~ 65135795 (-)
G636571 LOC106583344 other upstream 745349 65209760 ~ 65236881 (-)

Expression


Co-expression Network