LOC110528235 (LOC106583273)


Basic Information

Item Value
gene id LOC110528235
gene name LOC106583273
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 64521769 ~ 64526166 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610117.2
CGTAGATTAGTCTTTGAGGCGAGGGCAGGCGGGGGTCCCTATACGCCTAATGGTTAACTCAGTGTTGCAGAAAAATATGAGGAGAGAAAGTCTGTTTTGAAAGTTATTGTCTGCTACATTTGCCACATTTCCATTTTTCATCTGGCAGACGTGTTCCATTGTCCTTGAGAGCGGTACCCCCCCGCCGcacactgctcctctctccagctgtCACTTGAACCTCCTTTTCCTTCTGCCCCCCACTCTCAACACCCCCCACCCTCAATTTCCCCAACAACCCCCTCACGGATACACAGCCCCGATGGCAGGGCGCCCATCCCGACCCAGTGGCCAGCCCCAGTCCAGTAAGGTGAGCCAGTTTAAATTGGTTCTACTGGGGGAGACATCAGTGGGGAAGTCCAGCCTGCTGCTGCAGTTTGTCAAAGGCCAGTACCAGGACTTCGGGGAGAGCACCATTGGGGCGGCCTTTTTGACTCAGATGGTGAGTGTGGACAGTGCCATGGTGAAGTTTGAGATCTGGGACACGGCTGGTCAGGAACGCTACCACAGCCTGGCACCTATGTACTACAGAGGAGCTCAGGCAGCCATAGTGGTCTATGACATTACCAACACAGAGACCTTTGTACGAGCCAAAGCCTGGGTGAGCGAGCTCCAGAAACAGGCCAGTACAAACATGGTGATAGCCTTAGCGGGCAACAAAGCCGATTGGTCTGCTAACAGAGCGGTGGAGTATACGGATGGTCAGGGTTATGCTGCTGACAACAGTCTTCTCTTCATGGAGACCTCTGCCAAGACAGCCATGAATGTCAACAACCTCTTCCTGGCCATAGCCAAGAAACTGCCCAAGAGTGAGCCACTGGGTGGAGTAGCTGGCAGTGCTGGGGTTCGAGGAGGACCTCCAGTGGACCTCAGACAGCCTACCCAGACCAGCCCTGCCCAGTGCTGTGGAAACTGAGGAAGGATGGGGGAGAAGAGAAGCAAGCTCACATCTGAGGGAGGAGGGAAGTTTAAAGAGATTTTCCAGACAAAAGAAAGGAGCGTAAAAGAGAGAAGTGTAGCATGCAAATGAGTTAAAGGAATGATAAGGgacaaatacactgagtgtacaaaacattaggaactccttcctaatattgagttgcacccacccAACTGTTCaagctatgtcatggaaagagcaggtgttcttaatgttttgtatactcagtgtatgtagaTCAATGGGAGAAAAACACACACTACAATAAGATGAACTTCTATTAAAGTTATCACTTCCCAACATGTTTTTGTCAACTCGGCACTACTGGACAGCCAGATAAAATACACTTACTGTATGGTCTGTACCTTTCCAAATTTTCGTGGGTTTATTTGATATTATGAAAATAAATTTAATTATGTTGAAATACAGACTGCGTTGTCCCACCTCGATGTTTACACTCAGCAGTTATCCCAGTACTAGAAACTAAGGCCAAATGAACACGTGGTGTGGGGTTATGAAGTTCTTGGCAAATGCTGCCAATCTGAGGACAcaaacaggaagtgacatcacaTTGGTCTTTCAGGCGGTGCGGTCACACTAGGCCAAAGCGATTAAAACAGAGGTGGAGGCCAAACGTCTGTTTGCACAAAGCACAGATCATTTCTGAGAACACATGGTCAAAGCTCCCAGCAGTCCCTCCTATGACTGCATATCAAATAGCTTTAATCCATGTTCATTTGCCTCTCAATCTTAGTTGGACATTTATATTATCAGCTCTGCTGTACAGTTCCTGAGCCTCTCATGTAGTCCCTAAAAGAGGAAGTGacatcaaatgtaaaaaaaaatatcctttACTAATAAATGTGCAATACTAAAGGTGTACTCAGCTGGCCTGTACTATAGGAACGTTTTCTATGTTGTAGTTAGAAATAGAATGTATAGAACCATGTACAGTACAGGTAACCCTAATGTTACAGACTGTTCACCGGTGATGGTTGAACAAAATTATTGGCCAATTGCATAGAGATGGTGATAAAAACAGTGGAACTAAGACAATGAGAAGATCATTTCTTGTGGTTTGACAAAATCAATGTCCTTTATCCGATTTGTCTCTTTTGTTTCTGTCCTGTTTTAATTACCACAGACGCATTGCTCACTGCAAATATTACTGTGTTATAGTTTCATAGAATTCCCTggctgtgtattgttttataaaCACAAAGTATATATTTGCCTAATGGTGTTCCAATATAGCATCATAAAAGGCACTATATGCCCACTGGATCTCATTTCAAGTCTTGTATTATCAAGCTTTTTATAACAGTGTGCATTGCCCATGTATGCATATCCTATATCGCAGTCTCAATGTcttgttttaaaatgtttacaaataagTGCCTTTCTTTTTTAATCTTTAATTGTTTGTTGGTCTATTCATGTGCAGTTTGATAATACATAATTGATGTGATAAGA
>XM_036983823.1
ATCTGTTACCGCCCCAAAACACCGGAATTACGAGATGGGACAACGCAGACTGTATCTCAACTAAAAAGACAAAGGATAAACAGCAACATTTGCCAGCCCCGATGGCAGGGCGCCCATCCCGACCCAGTGGCCAGCCCCAGTCCAGTAAGGTGAGCCAGTTTAAATTGGTTCTACTGGGGGAGACATCAGTGGGGAAGTCCAGCCTGCTGCTGCAGTTTGTCAAAGGCCAGTACCAGGACTTCGGGGAGAGCACCATTGGGGCGGCCTTTTTGACTCAGATGGTGAGTGTGGACAGTGCCATGGTGAAGTTTGAGATCTGGGACACGGCTGGTCAGGAACGCTACCACAGCCTGGCACCTATGTACTACAGAGGAGCTCAGGCAGCCATAGTGGTCTATGACATTACCAACACAGAGACCTTTGTACGAGCCAAAGCCTGGGTGAGCGAGCTCCAGAAACAGGCCAGTACAAACATGGTGATAGCCTTAGCGGGCAACAAAGCCGATTGGTCTGCTAACAGAGCGGTGGAGTATACGGATGGTCAGGGTTATGCTGCTGACAACAGTCTTCTCTTCATGGAGACCTCTGCCAAGACAGCCATGAATGTCAACAACCTCTTCCTGGCCATAGCCAAGAAACTGCCCAAGAGTGAGCCACTGGGTGGAGTAGCTGGCAGTGCTGGGGTTCGAGGAGGACCTCCAGTGGACCTCAGACAGCCTACCCAGACCAGCCCTGCCCAGTGCTGTGGAAACTGAGGAAGGATGGGGGAGAAGAGAAGCAAGCTCACATCTGAGGGAGGAGGGAAGTTTAAAGAGATTTTCCAGACAAAAGAAAGGAGCGTAAAAGAGAGAAGTGTAGCATGCAAATGAGTTAAAGGAATGATAAGGgacaaatacactgagtgtacaaaacattaggaactccttcctaatattgagttgcacccacccAACTGTTCaagctatgtcatggaaagagcaggtgttcttaatgttttgtatactcagtgtatgtagaTCAATGGGAGAAAAACACACACTACAATAAGATGAACTTCTATTAAAGTTATCACTTCCCAACATGTTTTTGTCAACTCGGCACTACTGGACAGCCAGATAAAATACACTTACTGTATGGTCTGTACCTTTCCAAATTTTCGTGGGTTTATTTGATATTATGAAAATAAATTTAATTATGTTGAAATACAGACTGCGTTGTCCCACCTCGATGTTTACACTCAGCAGTTATCCCAGTACTAGAAACTAAGGCCAAATGAACACGTGGTGTGGGGTTATGAAGTTCTTGGCAAATGCTGCCAATCTGAGGACAcaaacaggaagtgacatcacaTTGGTCTTTCAGGCGGTGCGGTCACACTAGGCCAAAGCGATTAAAACAGAGGTGGAGGCCAAACGTCTGTTTGCACAAAGCACAGATCATTTCTGAGAACACATGGTCAAAGCTCCCAGCAGTCCCTCCTATGACTGCATATCAAATAGCTTTAATCCATGTTCATTTGCCTCTCAATCTTAGTTGGACATTTATATTATCAGCTCTGCTGTACAGTTCCTGAGCCTCTCATGTAGTCCCTAAAAGAGGAAGTGacatcaaatgtaaaaaaaaatatcctttACTAATAAATGTGCAATACTAAAGGTGTACTCAGCTGGCCTGTACTATAGGAACGTTTTCTATGTTGTAGTTAGAAATAGAATGTATAGAACCATGTACAGTACAGGTAACCCTAATGTTACAGACTGTTCACCGGTGATGGTTGAACAAAATTATTGGCCAATTGCATAGAGATGGTGATAAAAACAGTGGAACTAAGACAATGAGAAGATCATTTCTTGTGGTTTGACAAAATCAATGTCCTTTATCCGATTTGTCTCTTTTGTTTCTGTCCTGTTTTAATTACCACAGACGCATTGCTCACTGCAAATATTACTGTGTTATAGTTTCATAGAATTCCCTggctgtgtattgttttataaaCACAAAGTATATATTTGCCTAATGGTGTTCCAATATAGCATCATAAAAGGCACTATATGCCCACTGGATCTCATTTCAAGTCTTGTATTATCAAGCTTTTTATAACAGTGTGCATTGCCCATGTATGCATATCCTATATCGCAGTCTCAATGTcttgttttaaaatgtttacaaataagTGCCTTTCTTTTTTAATCTTTAATTGTTTGTTGGTCTATTCATGTGCAGTTTGATAATACATAATTGATGTGATAAGA
>XM_021610116.2
AGTTTCTGTGGAGGAAGGATAGACTTTTACCAGTAGACAATTGGGTAAAAAGCTGTCAATCTGTTACCGCCCCAAAACACCGGAATTACGAGATGGGACAACGCAGACTGTATCTCAACTAAAAAGACAAAGGATAAACAGCAACATTTGCCAGATTTCCATTTTTCATCTGGCAGACGTGTTCCATTGTCCTTGAGAGCGGTACCCCCCCGCCGcacactgctcctctctccagctgtCACTTGAACCTCCTTTTCCTTCTGCCCCCCACTCTCAACACCCCCCACCCTCAATTTCCCCAACAACCCCCTCACGGATACACAGCCCCGATGGCAGGGCGCCCATCCCGACCCAGTGGCCAGCCCCAGTCCAGTAAGGTGAGCCAGTTTAAATTGGTTCTACTGGGGGAGACATCAGTGGGGAAGTCCAGCCTGCTGCTGCAGTTTGTCAAAGGCCAGTACCAGGACTTCGGGGAGAGCACCATTGGGGCGGCCTTTTTGACTCAGATGGTGAGTGTGGACAGTGCCATGGTGAAGTTTGAGATCTGGGACACGGCTGGTCAGGAACGCTACCACAGCCTGGCACCTATGTACTACAGAGGAGCTCAGGCAGCCATAGTGGTCTATGACATTACCAACACAGAGACCTTTGTACGAGCCAAAGCCTGGGTGAGCGAGCTCCAGAAACAGGCCAGTACAAACATGGTGATAGCCTTAGCGGGCAACAAAGCCGATTGGTCTGCTAACAGAGCGGTGGAGTATACGGATGGTCAGGGTTATGCTGCTGACAACAGTCTTCTCTTCATGGAGACCTCTGCCAAGACAGCCATGAATGTCAACAACCTCTTCCTGGCCATAGCCAAGAAACTGCCCAAGAGTGAGCCACTGGGTGGAGTAGCTGGCAGTGCTGGGGTTCGAGGAGGACCTCCAGTGGACCTCAGACAGCCTACCCAGACCAGCCCTGCCCAGTGCTGTGGAAACTGAGGAAGGATGGGGGAGAAGAGAAGCAAGCTCACATCTGAGGGAGGAGGGAAGTTTAAAGAGATTTTCCAGACAAAAGAAAGGAGCGTAAAAGAGAGAAGTGTAGCATGCAAATGAGTTAAAGGAATGATAAGGgacaaatacactgagtgtacaaaacattaggaactccttcctaatattgagttgcacccacccAACTGTTCaagctatgtcatggaaagagcaggtgttcttaatgttttgtatactcagtgtatgtagaTCAATGGGAGAAAAACACACACTACAATAAGATGAACTTCTATTAAAGTTATCACTTCCCAACATGTTTTTGTCAACTCGGCACTACTGGACAGCCAGATAAAATACACTTACTGTATGGTCTGTACCTTTCCAAATTTTCGTGGGTTTATTTGATATTATGAAAATAAATTTAATTATGTTGAAATACAGACTGCGTTGTCCCACCTCGATGTTTACACTCAGCAGTTATCCCAGTACTAGAAACTAAGGCCAAATGAACACGTGGTGTGGGGTTATGAAGTTCTTGGCAAATGCTGCCAATCTGAGGACAcaaacaggaagtgacatcacaTTGGTCTTTCAGGCGGTGCGGTCACACTAGGCCAAAGCGATTAAAACAGAGGTGGAGGCCAAACGTCTGTTTGCACAAAGCACAGATCATTTCTGAGAACACATGGTCAAAGCTCCCAGCAGTCCCTCCTATGACTGCATATCAAATAGCTTTAATCCATGTTCATTTGCCTCTCAATCTTAGTTGGACATTTATATTATCAGCTCTGCTGTACAGTTCCTGAGCCTCTCATGTAGTCCCTAAAAGAGGAAGTGacatcaaatgtaaaaaaaaatatcctttACTAATAAATGTGCAATACTAAAGGTGTACTCAGCTGGCCTGTACTATAGGAACGTTTTCTATGTTGTAGTTAGAAATAGAATGTATAGAACCATGTACAGTACAGGTAACCCTAATGTTACAGACTGTTCACCGGTGATGGTTGAACAAAATTATTGGCCAATTGCATAGAGATGGTGATAAAAACAGTGGAACTAAGACAATGAGAAGATCATTTCTTGTGGTTTGACAAAATCAATGTCCTTTATCCGATTTGTCTCTTTTGTTTCTGTCCTGTTTTAATTACCACAGACGCATTGCTCACTGCAAATATTACTGTGTTATAGTTTCATAGAATTCCCTggctgtgtattgttttataaaCACAAAGTATATATTTGCCTAATGGTGTTCCAATATAGCATCATAAAAGGCACTATATGCCCACTGGATCTCATTTCAAGTCTTGTATTATCAAGCTTTTTATAACAGTGTGCATTGCCCATGTATGCATATCCTATATCGCAGTCTCAATGTcttgttttaaaatgtttacaaataagTGCCTTTCTTTTTTAATCTTTAATTGTTTGTTGGTCTATTCATGTGCAGTTTGATAATACATAATTGATGTGATAAGA
>TU723175
CCAGCTGTTTGAGAAGGACATGCATTTCAGGCTAGTATATCTTCCCTGTTCCTTCTGGCCATATCTGATCTTTATTTTCTGCTCTGGATAGGAGACCTTTGTACGAGCCAAAGCCTGGGTGAGCGAGCTCCAGAAACAGGCCAGTACAAACATGGTGATAGCCTTAGCGGGCAACAAAGCCGATTGGTCTGCTAACAGAGCGGTGGAGTATACGGATGGTCAGGGTTATGCTGCTGACAACAGTCTTCTCTTCATGGAGACCTCTGCCAAGACAGCCATGAATGTCAACAACCTCTTCCTGGCCATAGCCAAGAAACTGCCCAAGAGTGAGCCACTGGGTGGAGTAGCTGGCAGTGCTGGGGTTCGAGGAGGACCTCCAGTGGACCTCAGACAGCCTACCCAGACCAGCCCTGCCCAGTGCTGTGGAAACTGAGGAAGGATGGGGGAGAAGAGAAGCAAGCTCACATCTGAGGGAGGAGGGAAGTTTAAAGAGATTTTCCAGACAAAAGAAAGGAGCGTAAAAGAGAGAAGTGTAGCATGCAAATGAGTTAAAGGAATGATAAGGgacaaatacactgagtgtacaaaacattaggaactccttcctaatattgagttgcacccacccAACTGTTCaagctatgtcatggaaagagcaggtgttcttaatgttttgtatactcagtgtatgtagaTCAATGGGAGAAAAACACACACTACAATAAGATGAACTTCTATTAAAGTTATCACTTCCCAACATGTTTTTGTCAACTCGGCACTACTGGACAGCCAGATAAAATACACTTACTGTATGGTCTGTACCTTTCCAAATTTTCGTGGGTTTATTTGATATTATGAAAATAAATTTAATTATGTTGAAATACAGACTGCGTTGTCCCACCTCGATGTTTACACTCAGCAGTTATCCCAGTACTAGAAACTAAGGCCAAATGAACACGTGGTGTGGGGTTATGAAGTTCTTGGCAAATGCTGCCAATCTGAGGACAcaaacaggaagtgacatcacaTTGGTCTTTCAGGCGGTGCGGTCACACTAGGCCAAAGCGATTAAAACAGAGGTGGAGGCCAAACGTCTGTTTGCACAAAGCACAGATCATTTCTGAGAACACATGGTCAAAGCTCCCAGCAGTCCCTCCTATGACTGCATATCAAATAGCTTTAATC

Function

NR:

description
PREDICTED: ras-related protein Rab-5B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610117.2 False 2452 mRNA 0.44 6 64521769 64525659
XM_036983823.1 False 2252 mRNA 0.43 6 64521769 64526108
XM_021610116.2 False 2480 mRNA 0.44 6 64521769 64526166
TU723175 True 1185 TUCP 0.45 3 64522514 64524181

Neighbor

gene id symbol gene type direction distance location
LOC110528233 LOC106583275 coding downstream 32634 64449889 ~ 64489135 (-)
LOC110528226 pmel coding downstream 175509 64338852 ~ 64346260 (-)
LOC110528229 LOC105016959 coding downstream 194139 64325626 ~ 64327630 (-)
LOC110528227 LOC100380681 coding downstream 199460 64318200 ~ 64322309 (-)
prph prph coding downstream 217944 64296947 ~ 64303825 (-)
LOC110528237 LOC106583271 coding upstream 130745 64656911 ~ 64666144 (-)
LOC110528239 LOC106583268 coding upstream 143565 64669731 ~ 64689634 (-)
LOC110528240 LOC106583267 coding upstream 170342 64696508 ~ 64726237 (-)
LOC118965386 NA coding upstream 209768 64735934 ~ 64736697 (-)
slc11a2 nramp-beta coding upstream 224851 64750962 ~ 64779946 (-)
G636139 NA non-coding downstream 70672 64445484 ~ 64451097 (-)
G636111 NA non-coding downstream 124264 64397068 ~ 64397505 (-)
G636086 LOC107662719 non-coding downstream 169017 64352341 ~ 64352752 (-)
LOC110528997 timeless non-coding downstream 247419 64272734 ~ 64286936 (-)
LOC110528224 LOC106583281 non-coding downstream 269467 64231750 ~ 64252407 (-)
G636219 NA non-coding upstream 18787 64544953 ~ 64545212 (-)
G636224 NA non-coding upstream 25084 64551250 ~ 64551773 (-)
G636229 NA non-coding upstream 27933 64554099 ~ 64554298 (-)
G636230 NA non-coding upstream 30838 64557004 ~ 64557294 (-)
G636232 NA non-coding upstream 33604 64559770 ~ 64595363 (-)
G636055 LOC100380681 other downstream 195539 64318194 ~ 64326230 (-)
G635167 NA other downstream 486388 64032446 ~ 64035381 (-)
LOC110528216 LOC106565449 other downstream 524530 63993536 ~ 64036771 (-)
LOC110528212 LOC106583293 other downstream 728989 63785772 ~ 63827547 (-)
si:dkey-28n18.9 LOC106583160 other downstream 1513729 62983119 ~ 63008072 (-)
G636532 LOC106583345 other upstream 608084 65134250 ~ 65134745 (-)
G636533 LOC106583345 other upstream 609372 65135538 ~ 65135795 (-)
G636571 LOC106583344 other upstream 708318 65209760 ~ 65236881 (-)
G636719 NA other upstream 967624 65493790 ~ 65495157 (-)

Expression


Co-expression Network