LOC110528239 (LOC106583268)


Basic Information

Item Value
gene id LOC110528239
gene name LOC106583268
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 64669731 ~ 64689634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610127.2
TGCAAACTCAGGCAAATCTCCCAGGGTCCAAGggccaggaggaggaagaggagaagaaggatgCTTTGATGAGCCAGTGACAATCCTAAATCCTCTGGTACTCTCCTGGGGATGTACTGCTGTGTCCAACCTTGAGTCAACAGAAGAACcatccagacacacacagagacacttacTCCTACAATCAAGCAAGTAACTTTCTAGCTGGACACCCTTGTCTTCTACCTCTGCAACAGCAACTCCAGGGTCCAAAAATCAGGTCCAAGGAACTTTCCCTCATAGATTGAGATTGCCTGTATCTGAGAAACATGGAGTACACATTCAGAGCAGTATCCCACAATCCTGGGATTATAATCTGGCGAATCGAGAAAATGGAGCtggtgcaggtccctgaaaaatCACATGGAAACTTCTACGAGGGTGACTGCTACATCCTACTCTCTACCCAGAAAGTGGGTAGCTCTCTCTCCTATGACATCCACTACTGGATCGGCTCCCAGTCCAGTCAGGATGAACAGGGTGCGGCCGCAGTTTACACCATCCAGCTGGATGAGTTCCTGGGATCAGGGCCCATCCAGCACCGCGAGGCCCAGAACCATGAGTCGGATGCCTTCCGGGGATACTTCAAACAAGGGGTCATCTATAAGAAGGGTGGGGTGGCATCAGGAAtgaaacacatagaaaccaaCAGTTATGACATCCAGAGACTGCTGCATGTGAAAGGGAAGAAAAGGGTCAGCGCCATGGAGGTAGAGATGAGCTGGAAAAGCTTCAATCTTGGGGATGTCTTTCTGTTGGACTCTGGTAAAACCATCATTCAGTGGAATGGACCAGAGAGCAACAGACAGGAGAGGCTCAAGGGCATGCTGCTGGCTAAAGACATTCGGGACAGGGAGCGAGGGGGTCGGACGGAGATAGGGGTGATAGAGGGGGAAGCAGAAGCAAATTCCTCTAAACTGATGGACATCCTGACTAGCATCCTGGGGCAACGGACCTCCAAGCTGCCAAGTGGAACGCCTGATGAATTAGCTGACCAACAACAGAAAGCACAGCTTACTCTGTACCATGTGTCTGATGCTGAGGGCCAGATGAAAGTCATAGAAGTTGCCACTAGGCCACTGGTTCAGGACATGTTGAATCATGACGACTGTTATTTCCTAGACCAGGGAGGGGTGAAGATCTTTGTGTGGAAGGGGAAGCGAGCCAacaaggcagagagacaggctgcCATGTCCAGAGCTTTGGAGTTCATTAAGCTGAAGAactaccccaccaccaccaatGTGGAGACAGTGAATGACGGGGCAGAGTCTGCCCTCTTTAAGCAGCTGTTCCAGAGCTGGAGTGTGAAGGATCAAACTGTAGGCCTGGGCAAAACACACAGTGTGGGGAGAGTGGCCAACGTCACTCAGGAGAAGTTTGATGCCACACGGATGCATGTGATGCCAGATGTAGCAGCACAGGAGCGCATGGTGGATGATGGCACTGGCCAAGTGCAGGTGTGGCGTATCGAGGACCTGGAGCTGGTCCCAGTGGAATCCCAGTGGCATGGCTTCTTCTATGGAGGAGACTGCTACTTGGTCCTCTACACTTATGAGGTCCACAACAAACTCAACTACCTCCTTTACATGTGGCAGGGGCGTCATGCCTCTCAGGATGAGATAGCGGCATCTGCCTTCCAGGCCGTGGCCCTGGATCAAAAGTATGGTGACCAGCCTGTACAAGTAAGGATCACCATGGGCAAGGAACCCAGACACTTCATGGCCATGTTCAAGGGTAAAATGGTTATATTTGAGGGTGGTACCTCCAGAAAAGGGACATCTGACCCAGAGCCCCCCATCAGATTGTTCCAGGTCCGCGGTTCTGACGCCTCCAACACCAAAGCCATCGAGGTGCCGGCCCTGGCAGCCTCGCTCAACTCAAACGATGTCTTTCTGCTGAGGAGCCAGTCCGGGATTCACCTGTGGTGTGGCAAGGGATCAAGTGGGGATGAGAGAGCCATGGCTAAGGAGGTCAGTTCTGTAATTGGACAGCACTCAACTGCTGAGGAGATCGTGGCGGAGGGTCAGGAGCCTGTTGAATTCTGGGATTTACTTGGAGGGAAGGCCCCTTATGCCAACGACAAGAGACTACAGCAGGCTGCTCTGGATCATCAGCAGCGTCTCTTTGAATGCTCCAATAAGACTGGCCGTTTCATCGTTACCGAGGTGACCCAGTTCACACAGGATGACCTCAGCGAGGATGATGTCATGCTGCTAGACACGTGGGACCAGGTTTTCCTCTGGGTAGGGAATGAGGCCAATGAGTTGGAGAGGAAGGAGGCTGTGGTCACCAGTCAGGAGTACCTGCGAACTCACCCAGGGTCCCGGGACCCTGACACCCCCGTCCTCCTCATCAAGCAGGGGTACGAACCCCCCACCTTCACCGGCTGGTTCACCGCCTGGGACCCCTCCAAATGGAGCGGAGGGAAAACTTACGAAGAGCTGAAGAAAGAGTTGGGGGAGGTGACATTCCTCGTAAGGATCACAAATGAGCAGAATGGTGTTGAGACCAAGAAGAACTTCCAGTCTTACCCACCTAAGGACCTGATCAACAAACTAGCCAATGAGCTGCCTAAGGGTGTCGAACCCACCCAAAAGGAGAAACATCTCTCAGACTCAGACTTCAGTGCCATATTTggaatgtctaaaaacctgtttgccAGCCTGCCTCTATGGAAGCAGCTGAGCATTAAAAAAGGCAAAGGCTTATTTTAAGGGGACTGAAACTCTCATAATTTTGCATCAATTTCCAGATGTTTAAATTTGCAAAGCATACTAATTGTACCTTGTTCCAACATTACTTTTAATTTGTGTCTTATTATTTTGTTCTAATTTCAAAGACTGTCATAAATGCAATGGACGTCAGAAGACATTAACTGAGAtatttaatgttttgtgcacttaaaaaaacattttgattgtACATGTCTACCTCTCAATCAAACATCCATGTTAAATACAATCAATCGAATAAAAACATCAATGTGTGTATTCTCAATAATGCCTCTTCGGACCACGCACAACTACCATATATCCTGTAGTTTAGTTGATTGTAATATGGTAGGACTCAATATACAAATAAAAAAGGGGATATGTC
>TU723292
AGGGATCAAGTGGGGATGAGAGAGCCATGGCTAAGGAGGTCAGTTCTGTAATTGGACAGCACTCAACTGCTGAGGAGATCGTGGCGGAGGGTCAGGAGCCTGTTGAATTCTGGGATTTACTTGGAGGGAAGGCCCCTTATGCCAACGACAAGAGACTACAGCAGGCTGCTCTGGATCATCAGCAGCGTCTCTTTGAATGCTCCAATAAGACTGGCCGTTTCATCGTTACCGAGGTGACCCAGTTCACACAGGATGACCTCAGCGAGGATGATGTCATGCTGCTAGACACGTGGGACCAGGTTTTCCTCTGGGTAGGGAATGAGGCCAATGAGTTGGAGAGGAAGGAGGCTGTGGTCACCAGTCAGGAGTACCTGCGAACTCACCCAGGGTCCCGGGACCCTGACACCCCCGTCCTCCTCATCAAGCAGGGGTACGAACCCCCCACCTTCACCGGCTGGTTCACCGCCTGGGACCCCTCCAAATGGAGCGGAGGGAAAACTTACGAAGAGCTGAAGAAAGAGTTGGGGGAGGTGACATTCCTCGTAAGGATCACAAATGTAAGCACAATTTTATTTATCTATGCATTCACCAAAACTTGGTGTAAAG

Function

NR:

description
advillin isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610127.2 False 3138 mRNA 0.50 20 64669731 64689634
TU723292 True 606 TUCP 0.53 4 64670850 64672016

Neighbor

gene id symbol gene type direction distance location
LOC110528237 LOC106583271 coding downstream 3587 64656911 ~ 64666144 (-)
LOC110528235 LOC106583273 coding downstream 143565 64521769 ~ 64526166 (-)
LOC110528233 LOC106583275 coding downstream 180596 64449889 ~ 64489135 (-)
LOC110528226 pmel coding downstream 323471 64338852 ~ 64346260 (-)
LOC110528229 LOC105016959 coding downstream 342101 64325626 ~ 64327630 (-)
LOC110528240 LOC106583267 coding upstream 6874 64696508 ~ 64726237 (-)
LOC118965386 NA coding upstream 46300 64735934 ~ 64736697 (-)
slc11a2 nramp-beta coding upstream 61383 64750962 ~ 64779946 (-)
LOC110528242 LOC106583262 coding upstream 124450 64814084 ~ 64815800 (-)
LOC110528246 nelfd coding upstream 168893 64858527 ~ 64865131 (-)
G636247 LOC106583269 non-coding downstream 32182 64634534 ~ 64637549 (-)
G636278 NA non-coding downstream 52534 64616987 ~ 64617197 (-)
G636232 NA non-coding downstream 74368 64559770 ~ 64595363 (-)
G636230 NA non-coding downstream 112437 64557004 ~ 64557294 (-)
G636229 NA non-coding downstream 115433 64554099 ~ 64554298 (-)
G636321 LOC105030512 non-coding upstream 5248 64694882 ~ 64695303 (-)
G636348 NA non-coding upstream 38439 64728073 ~ 64728414 (-)
G636330 NA non-coding upstream 58679 64748313 ~ 64750884 (-)
G636358 NA non-coding upstream 67373 64757007 ~ 64757519 (-)
G636055 LOC100380681 other downstream 343501 64318194 ~ 64326230 (-)
G635167 NA other downstream 634350 64032446 ~ 64035381 (-)
LOC110528216 LOC106565449 other downstream 672492 63993536 ~ 64036771 (-)
LOC110528212 LOC106583293 other downstream 876951 63785772 ~ 63827547 (-)
G636532 LOC106583345 other upstream 444616 65134250 ~ 65134745 (-)
G636533 LOC106583345 other upstream 445904 65135538 ~ 65135795 (-)
G636571 LOC106583344 other upstream 544850 65209760 ~ 65236881 (-)
G636719 NA other upstream 804156 65493790 ~ 65495157 (-)
G637495 NA other upstream 1191378 65881012 ~ 65882556 (-)

Expression


Co-expression Network