Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110528267 |
| gene name | LOC106583332 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 65367589 ~ 65388465 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| ADP-ribosylation factor GTPase-activating protein 1-like isoform X2 |
| id | description |
|---|---|
| K12492 | ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021610183.2 | False | 4514 | mRNA | 0.43 | 14 | 65367589 | 65388465 |
| XM_021610185.2 | False | 4448 | mRNA | 0.42 | 13 | 65367589 | 65388465 |
| XM_021610188.2 | False | 4418 | mRNA | 0.42 | 12 | 65367589 | 65388465 |
| XM_021610189.2 | False | 4391 | mRNA | 0.42 | 12 | 65367589 | 65388465 |
| XM_021610186.2 | False | 4426 | mRNA | 0.42 | 12 | 65367590 | 65388465 |
| XM_021610190.2 | False | 4366 | mRNA | 0.42 | 11 | 65367590 | 65388465 |
| XM_021610193.2 | False | 4360 | mRNA | 0.42 | 11 | 65367590 | 65388465 |
| XM_021610184.2 | True | 4482 | mRNA | 0.42 | 13 | 65367591 | 65388465 |
65,348,000
65,352,000
65,356,000
65,360,000
65,364,000
65,368,000
65,372,000
65,376,000
65,380,000
65,384,000
65,388,000
65,392,000
NC_048571.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| sys1 | sys1 | coding | upstream | 39247 | 65326359 ~ 65328342 (+) |
| LOC110528262 | LOC106583338 | coding | upstream | 59253 | 65292812 ~ 65308336 (+) |
| zgc:113184 | LOC106583340 | coding | upstream | 87173 | 65277220 ~ 65280416 (+) |
| LOC110528259 | LOC106583342 | coding | upstream | 93569 | 65246585 ~ 65274020 (+) |
| LOC110528258 | LOC106583344 | coding | upstream | 130665 | 65229197 ~ 65236924 (+) |
| LOC110528266 | LOC106583331 | coding | downstream | 889 | 65389354 ~ 65430309 (+) |
| LOC110528268 | tbc1d20 | coding | downstream | 49300 | 65437765 ~ 65447183 (+) |
| maf1a | LOC106583327 | coding | downstream | 70966 | 65459431 ~ 65466804 (+) |
| LOC110529001 | NA | coding | downstream | 226087 | 65614552 ~ 65614997 (+) |
| c7h20orf96 | cssa22h20orf96 | coding | downstream | 288581 | 65677046 ~ 65685462 (+) |
| G635921 | NA | non-coding | upstream | 1298 | 65366092 ~ 65366291 (+) |
| G635913 | NA | non-coding | upstream | 28558 | 65338809 ~ 65339031 (+) |
| G635841 | LOC106583334 | non-coding | upstream | 29965 | 65337116 ~ 65337624 (+) |
| G635912 | NA | non-coding | upstream | 30585 | 65336661 ~ 65337004 (+) |
| G635846 | NA | non-coding | upstream | 36706 | 65330516 ~ 65330883 (+) |
| G635936 | NA | non-coding | downstream | 64520 | 65452985 ~ 65453253 (+) |
| G635940 | NA | non-coding | downstream | 104220 | 65492685 ~ 65492957 (+) |
| G635839 | NA | non-coding | downstream | 107257 | 65495722 ~ 65497166 (+) |
| G635942 | NA | non-coding | downstream | 109707 | 65498172 ~ 65498637 (+) |
| G635968 | NA | non-coding | downstream | 145125 | 65533590 ~ 65602211 (+) |
| G635848 | NA | other | upstream | 37297 | 65329936 ~ 65330292 (+) |
| G635769 | NA | other | upstream | 315433 | 65051644 ~ 65052156 (+) |
| G635635 | NA | other | upstream | 581196 | 64785216 ~ 64786393 (+) |
| G635332 | LOC100380681 | other | upstream | 1041330 | 64318200 ~ 64326259 (+) |
| LOC110528222 | LOC106583247 | other | upstream | 1166357 | 64099788 ~ 64201232 (+) |
| LOC110528281 | LOC106565490 | other | downstream | 515680 | 65901905 ~ 65908098 (+) |
| G637929 | NA | other | downstream | 1164123 | 66552588 ~ 66607744 (+) |
| G638011 | NA | other | downstream | 1233221 | 66621686 ~ 66622094 (+) |
| patz1 | LOC106583552 | other | downstream | 2052067 | 67433792 ~ 67446077 (+) |
| G639648 | NA | other | downstream | 2825053 | 68213518 ~ 68214402 (+) |
