LOC110528268 (tbc1d20)


Basic Information

Item Value
gene id LOC110528268
gene name tbc1d20
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 65437765 ~ 65447183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610194.2
ATccgacaacccaatcccaaagaagaaggaagcagcagcagcagctagctagctaccctgTGCAGGCAATAATGATATGGCCTATTTTACTGGACCAGTTTTGCAACTGGCTATCTCTCTAGCTTGTAGGAGTAACCATTTGTAATGTATAATCAATTTGGTGTATAATCAATTATATCGATCGAGTAATCTACGATGACAATAGGACTATCGTGGAAACCATGAAAAGATCTAGAAGTGTTGGTGCGTCTTCACCTTTGAATGGGATAGGAAAACAAGATGGCGACTCCCGGAGGAAGAGGAAGGTGGCAGAGATCTCTCAGGCCCTGAATGTGACGCCAGTGGATGTGGCGGCACTAAGGAGGATGGCCATCAGTGAGGGGGGGCTGCTCACAGACGAGATCCGCTGTAAAGTGTGGCCCCGGCTGCTGAACGTGCCTACCGACACCCTGCCTGAGAAACCAGaggaaatagagagggagaataATAAGGACTATAACCAGGTGCTGTTGGATGTCCAGCGTTCCCTTAAAAGATTCCCTCCTGGCATGCCAGACAAGCAGCGTGAGGGCCTCCAGGAGGAGCTGATTGACATCATCCTGCGGGTGCTGGGAAGGAACACCCAGCTACACTACTACCAGGGCTACCACGACATCGTGGTCACCTTCCTACTTGTGCTGGACGAACGTCTGGCCACTGCTCTGGTAGAGAAACTCTCTACGCACCACCTCAGGGACTTTATGGACCCCACCATGGACAACACTAAACACATCCTTAACTATCTGATGCCAATCATCGAGAGGATCAACCCAGAGGTGCATGACTTCATGCAGCAGGCAGAGGTGGGCACCATCTTTGCCCTTAGCTGGCTCATCACCTGGTTTGGCCACGTCCTATCAGATTTCCGCCACGTTGTGCGGTTGTATGACTTCTTCCTGGCCTGCCATCCTCTGAtgccaatctactttgctgctgtGATTGTGCTGTATCGAGAGGACGAGGTGTTGGACTGTGAGTGTGACATGGCGTCGGTGCACCACCTCCTGTCCCAGATCCCCCAGGACCTGCCCTACGAGACACTCATCAGCCGTGCAGGAGATCTCTTTGTCCAGTTCCCCCCCTCCGAGCTGGCCAGGGAGGCTGCCCAACAGTACAGTCAACAGACAGCAGCTTCCACCTTTAAAGACTTtgacctggtctcagagcagcaGCGGCCTGACTCAGTCCTGCGAAGGCGGCTGAGGGAGAAGCAGGCGCTGGAAGGAGCAGCTGCAGGGGCCATGGTGGTGATGGCACAACCCACTGTGGCCCGACGCTTCGTACGACTGGCCGTCATGGGGCTCACTGTGGCCCTGGGGGCAGCTGCCCTCACCCTGGTCAACACAGCCCTGGAGTGGGTGCCCAAACTGGACTTGCATCTCTTCCCCTGAGCGAGGGGGAGACTTGGAGGGAACAAATGGGGGCTGACGTACAGACTTAAACAGGGCGGCTATTACAGCAGAAGACGTacacgagagggaaagagaatatGGAGTTCTGTTCCCTATTATGAAGGACGAGAATGGAACAGAGACTTGACTGTTAACTTTGTCTTTAATTTATATTTGTAAATAAAATAACTGGATACTGATAAATGTCGTGCACAGAGGGATTAAGCTATTTATGTGATGGCAAGCGGCAACTTTTAAGGCTTTGGGTTACTAGTTGAAGAGCAGTCACTGGGGTCGAAACTGCTGCCAATGAAGAGTGTATGTGATTGTGTCCGAGATGGCACACTtgtccctatgtagtgtactgtatagggtgccatttcagatgctgTGTGTTCATGCTATTCGGTTCAAGGGTGAGTTAAATGACCCTCTGAGCCTCACATGGGCCATGTTGGCACAAGGACAGACAGTTCTCGCACGCCCCCCCTGGCctggtctccccccccccccacccccggcAGATCAAGTCAAATTGCCTGCCCTAAAAACACGTCCTTTTCATTACTGTACCAAGACCAAATACACAACTCCCATCTTTGTATGTTTAGCACTTAATTGTATCATTTTCTAAAGCATTAAGTTATAGGAACTATAATTTTTGCATAAACACACCACCCATATTTATCATGGATGACAATTTGCATAAGTTATGCCTAAAATAAATGAGTAATAGGTTAGCTTTGATCTCGGACAAAGCACCGATGGCACTGCCAGATATCCCATAAGCCCTGACTGGATCCCATGCTTTTATTGCACAATAATTAAATCCTATTTAGTTAGTTCCACATGTCTTCACATTTCAGCAGAACTCATTATACTCACCAAATGGCTTGGTTGAAGAAAGGACAAGGTTTTTGCACATTTCATTTTTAGCAATGTCACTTGAGCTTGTTgacagagtttaaaaaaaaaagtgattcaTTGGACCTGCTCATTTGTTCAACAGAAATACATGTGTATAATCATGCGTAGTCGACTTGATTGCGACACAGATACTCAGCAGTGCCTATTTTGGATATCAAACAATACAGCTCCATCAGTCTTATTTGCAATAGGTGGATTTTGTTGCACAGAAATTGCCTCATTCTGTATCATTGCACTAAATGTTTTTTTCTGCCTTTTATGTTGATTTCTGTTATATTTGTCATGAGAACAATTAAAACATTTACAAGATCAAAGCAAATAAACTACCTAGGTTGAGTGGA
>XM_021610195.2
ATccgacaacccaatcccaaagaagaaggaagcagcagcagcagctagctagctaccctgTGCAGGCAATAATGATATGGCCTATTTTACTGGACCAGTTTTGCAACTGGCTATCTCTCTAGCTTGTAGGAGTAACCATTTGTAATGTATAATCAATTTGGTGTATAATCAATTATATCGATCGAGTAATCTACGATGACAATAGGACTATCGTGGAAACCATGAAAAGATCTAGAAGTGTTGGTGCGTCTTCACCTTTGAATGGGATAGGAAAACAAGCTGCTGTGGGTTGAGGGACCTCAGCTGAACCATTGTCATGTGGACAGATGGCGACTCCCGGAGGAAGAGGAAGGTGGCAGAGATCTCTCAGGCCCTGAATGTGACGCCAGTGGATGTGGCGGCACTAAGGAGGATGGCCATCAGTGAGGGGGGGCTGCTCACAGACGAGATCCGCTGTAAAGTGTGGCCCCGGCTGCTGAACGTGCCTACCGACACCCTGCCTGAGAAACCAGaggaaatagagagggagaataATAAGGACTATAACCAGGTGCTGTTGGATGTCCAGCGTTCCCTTAAAAGATTCCCTCCTGGCATGCCAGACAAGCAGCGTGAGGGCCTCCAGGAGGAGCTGATTGACATCATCCTGCGGGTGCTGGGAAGGAACACCCAGCTACACTACTACCAGGGCTACCACGACATCGTGGTCACCTTCCTACTTGTGCTGGACGAACGTCTGGCCACTGCTCTGGTAGAGAAACTCTCTACGCACCACCTCAGGGACTTTATGGACCCCACCATGGACAACACTAAACACATCCTTAACTATCTGATGCCAATCATCGAGAGGATCAACCCAGAGGTGCATGACTTCATGCAGCAGGCAGAGGTGGGCACCATCTTTGCCCTTAGCTGGCTCATCACCTGGTTTGGCCACGTCCTATCAGATTTCCGCCACGTTGTGCGGTTGTATGACTTCTTCCTGGCCTGCCATCCTCTGAtgccaatctactttgctgctgtGATTGTGCTGTATCGAGAGGACGAGGTGTTGGACTGTGAGTGTGACATGGCGTCGGTGCACCACCTCCTGTCCCAGATCCCCCAGGACCTGCCCTACGAGACACTCATCAGCCGTGCAGGAGATCTCTTTGTCCAGTTCCCCCCCTCCGAGCTGGCCAGGGAGGCTGCCCAACAGTACAGTCAACAGACAGCAGCTTCCACCTTTAAAGACTTtgacctggtctcagagcagcaGCGGCCTGACTCAGTCCTGCGAAGGCGGCTGAGGGAGAAGCAGGCGCTGGAAGGAGCAGCTGCAGGGGCCATGGTGGTGATGGCACAACCCACTGTGGCCCGACGCTTCGTACGACTGGCCGTCATGGGGCTCACTGTGGCCCTGGGGGCAGCTGCCCTCACCCTGGTCAACACAGCCCTGGAGTGGGTGCCCAAACTGGACTTGCATCTCTTCCCCTGAGCGAGGGGGAGACTTGGAGGGAACAAATGGGGGCTGACGTACAGACTTAAACAGGGCGGCTATTACAGCAGAAGACGTacacgagagggaaagagaatatGGAGTTCTGTTCCCTATTATGAAGGACGAGAATGGAACAGAGACTTGACTGTTAACTTTGTCTTTAATTTATATTTGTAAATAAAATAACTGGATACTGATAAATGTCGTGCACAGAGGGATTAAGCTATTTATGTGATGGCAAGCGGCAACTTTTAAGGCTTTGGGTTACTAGTTGAAGAGCAGTCACTGGGGTCGAAACTGCTGCCAATGAAGAGTGTATGTGATTGTGTCCGAGATGGCACACTtgtccctatgtagtgtactgtatagggtgccatttcagatgctgTGTGTTCATGCTATTCGGTTCAAGGGTGAGTTAAATGACCCTCTGAGCCTCACATGGGCCATGTTGGCACAAGGACAGACAGTTCTCGCACGCCCCCCCTGGCctggtctccccccccccccacccccggcAGATCAAGTCAAATTGCCTGCCCTAAAAACACGTCCTTTTCATTACTGTACCAAGACCAAATACACAACTCCCATCTTTGTATGTTTAGCACTTAATTGTATCATTTTCTAAAGCATTAAGTTATAGGAACTATAATTTTTGCATAAACACACCACCCATATTTATCATGGATGACAATTTGCATAAGTTATGCCTAAAATAAATGAGTAATAGGTTAGCTTTGATCTCGGACAAAGCACCGATGGCACTGCCAGATATCCCATAAGCCCTGACTGGATCCCATGCTTTTATTGCACAATAATTAAATCCTATTTAGTTAGTTCCACATGTCTTCACATTTCAGCAGAACTCATTATACTCACCAAATGGCTTGGTTGAAGAAAGGACAAGGTTTTTGCACATTTCATTTTTAGCAATGTCACTTGAGCTTGTTgacagagtttaaaaaaaaaagtgattcaTTGGACCTGCTCATTTGTTCAACAGAAATACATGTGTATAATCATGCGTAGTCGACTTGATTGCGACACAGATACTCAGCAGTGCCTATTTTGGATATCAAACAATACAGCTCCATCAGTCTTATTTGCAATAGGTGGATTTTGTTGCACAGAAATTGCCTCATTCTGTATCATTGCACTAAATGTTTTTTTCTGCCTTTTATGTTGATTTCTGTTATATTTGTCATGAGAACAATTAAAACATTTACAAGATCAAAGCAAATAAACTACCTAGGTTGAGTGGA

Function

symbol description
tbc1d20 Predicted to enable GTPase activator activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in Warburg micro syndrome 4. Orthologous to human TBC1D20 (TBC1 domain family member 20).

NR:

description
PREDICTED: TBC1 domain family member 20 isoform X2

GO: NA

KEGG:

id description
K20372 TBC1D20, GYP8; TBC1 domain family member 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610194.2 False 2698 mRNA 0.48 8 65437765 65447183
XM_021610195.2 True 2745 mRNA 0.48 8 65437765 65447183
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Neighbor

gene id symbol gene type direction distance location
LOC110528266 LOC106583331 coding upstream 7456 65389354 ~ 65430309 (+)
LOC110528267 LOC106583332 coding upstream 49300 65367589 ~ 65388465 (+)
sys1 sys1 coding upstream 109423 65326359 ~ 65328342 (+)
LOC110528262 LOC106583338 coding upstream 129429 65292812 ~ 65308336 (+)
zgc:113184 LOC106583340 coding upstream 157349 65277220 ~ 65280416 (+)
maf1a LOC106583327 coding downstream 12248 65459431 ~ 65466804 (+)
LOC110529001 NA coding downstream 167369 65614552 ~ 65614997 (+)
c7h20orf96 cssa22h20orf96 coding downstream 229863 65677046 ~ 65685462 (+)
LOC110528274 gem coding downstream 240690 65687873 ~ 65700588 (+)
LOC110528275 NA coding downstream 297583 65744766 ~ 65755822 (+)
G635921 NA non-coding upstream 71474 65366092 ~ 65366291 (+)
G635913 NA non-coding upstream 98734 65338809 ~ 65339031 (+)
G635841 LOC106583334 non-coding upstream 100141 65337116 ~ 65337624 (+)
G635912 NA non-coding upstream 100761 65336661 ~ 65337004 (+)
G635846 NA non-coding upstream 106882 65330516 ~ 65330883 (+)
G635936 NA non-coding downstream 5802 65452985 ~ 65453253 (+)
G635940 NA non-coding downstream 45502 65492685 ~ 65492957 (+)
G635839 NA non-coding downstream 48539 65495722 ~ 65497166 (+)
G635942 NA non-coding downstream 50989 65498172 ~ 65498637 (+)
G635968 NA non-coding downstream 86407 65533590 ~ 65602211 (+)
G635848 NA other upstream 107473 65329936 ~ 65330292 (+)
G635769 NA other upstream 385609 65051644 ~ 65052156 (+)
G635635 NA other upstream 651372 64785216 ~ 64786393 (+)
G635332 LOC100380681 other upstream 1111506 64318200 ~ 64326259 (+)
LOC110528222 LOC106583247 other upstream 1236533 64099788 ~ 64201232 (+)
LOC110528281 LOC106565490 other downstream 456962 65901905 ~ 65908098 (+)
G637929 NA other downstream 1105405 66552588 ~ 66607744 (+)
G638011 NA other downstream 1174503 66621686 ~ 66622094 (+)
patz1 LOC106583552 other downstream 1993349 67433792 ~ 67446077 (+)
G639648 NA other downstream 2766335 68213518 ~ 68214402 (+)

Expression

LOC110528268(tbc1d20) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 25.
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LOC110528268(tbc1d20) Expression in each Bioproject

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LOC110528268(tbc1d20) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network