Gene
RNA
| Item | Value |
|---|---|
| gene id | sox12 |
| gene name | sox12 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 65586599 ~ 65593329 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| sox12 | Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure morphogenesis; cell differentiation; and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human SOX12 (SRY-box transcription factor 12). |
| description |
|---|
| PREDICTED: transcription factor SOX-11-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021610202.2 | False | 6222 | mRNA | 0.46 | 2 | 65586599 | 65593329 |
| TU723833 | True | 2745 | lncRNA | 0.40 | 2 | 65586604 | 65589936 |
65,578,000
65,579,000
65,580,000
65,581,000
65,582,000
65,583,000
65,584,000
65,585,000
65,586,000
65,587,000
65,588,000
65,589,000
65,590,000
65,591,000
65,592,000
65,593,000
65,594,000
65,595,000
NC_048571.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110528269 | trib3 | coding | downstream | 108286 | 65467736 ~ 65478313 (-) |
| LOC118965360 | rbck1 | coding | downstream | 129339 | 65451173 ~ 65457260 (-) |
| LOC110529000 | NA | coding | downstream | 224100 | 65360070 ~ 65362499 (-) |
| LOC100136780 | ssr1 | coding | downstream | 239331 | 65344022 ~ 65347268 (-) |
| LOC110528265 | LOC106583334 | coding | downstream | 243833 | 65337198 ~ 65342766 (-) |
| LOC118965313 | NA | coding | upstream | 88122 | 65681451 ~ 65687986 (-) |
| LOC110528276 | LOC106583323 | coding | upstream | 126725 | 65720054 ~ 65744788 (-) |
| LOC110528277 | NA | coding | upstream | 193612 | 65785569 ~ 65796175 (-) |
| LOC110528278 | LOC106583321 | coding | upstream | 218112 | 65811441 ~ 65857952 (-) |
| LOC110528280 | un119 | coding | upstream | 274164 | 65867493 ~ 65871588 (-) |
| G636722 | NA | non-coding | downstream | 8210 | 65499217 ~ 65578389 (-) |
| G636721 | NA | non-coding | downstream | 72686 | 65498708 ~ 65513913 (-) |
| G636720 | NA | non-coding | downstream | 90017 | 65496208 ~ 65496582 (-) |
| G636707 | NA | non-coding | downstream | 138287 | 65448080 ~ 65448312 (-) |
| G636706 | NA | non-coding | downstream | 138979 | 65447412 ~ 65447620 (-) |
| G637403 | NA | non-coding | upstream | 111691 | 65705020 ~ 65705229 (-) |
| G637412 | NA | non-coding | upstream | 122887 | 65716216 ~ 65716442 (-) |
| G637424 | NA | non-coding | upstream | 141683 | 65735012 ~ 65735349 (-) |
| G637441 | NA | non-coding | upstream | 166144 | 65759473 ~ 65759694 (-) |
| G637452 | NA | non-coding | upstream | 180380 | 65773709 ~ 65774110 (-) |
| G636719 | NA | other | downstream | 91442 | 65493790 ~ 65495157 (-) |
| G636571 | LOC106583344 | other | downstream | 349718 | 65209760 ~ 65236881 (-) |
| G636533 | LOC106583345 | other | downstream | 450804 | 65135538 ~ 65135795 (-) |
| G636532 | LOC106583345 | other | downstream | 451854 | 65134250 ~ 65134745 (-) |
| LOC110528239 | LOC106583268 | other | downstream | 914583 | 64669731 ~ 64689634 (-) |
| G637495 | NA | other | upstream | 287683 | 65881012 ~ 65882556 (-) |
| G637504 | LOC106583318 | other | upstream | 293607 | 65886936 ~ 65892402 (-) |
| G637669 | NA | other | upstream | 582631 | 66175960 ~ 66177895 (-) |
| G637722 | NA | other | upstream | 683453 | 66276782 ~ 66277080 (-) |
| LOC110528300 | LOC106583565 | other | upstream | 1462325 | 67055190 ~ 67079126 (-) |
