LOC110528276 (LOC106583323)


Basic Information

Item Value
gene id LOC110528276
gene name LOC106583323
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 65720054 ~ 65744788 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610211.2
AGACCCGGAAGATGGTATCGACGTATCTCTGTCTGTTTTGGTTGAGTCACCTCGGACCATGCCTTAACCACTGATGCCTTACTGTGTGGTTATAGGCAGAAACCAACTAGAATCATGCAAACTAACAGATAATTCTTGCGACAAACTAAGGCCTTATTTGATTATTTTTATGCTTACAAATGTTTAGATCTTACATCGGTTTGGCGGTGTAACGAACGATTCGTCAAAATGATGGAGGAAGAAATGGATAGGTTCCAAGTACCCCCAGTAACAGAGACACAGCCCTTGCAGGACCCAGCAGCATCTGACACCTCTGAGGCTGACTCTGACACTAGAGAAGGTGAGACGGTGGCCATGAACTACAAGCCCTCCCCACTGCAAGTGAAAATAGagaaacagagagagctggCCAGGAAGGGCTCAGTAAAGAATAGCCCCGTCAACCACCAACCAAAGAAGAACAACGTCATGGCCAGAACACGTTTGGTGGTGCCAAACAAAGGCTACTCCTCTTTAGACCAGACCAGCCCGGATGAGAAGCCCCTGGTAACGCTGGACACAGACAGTGATGATGACTTTGACATGTCCAGATACTCTTCGTCTGGATACTCCTCCGCCGAGGTGAGATGTCTGAGGGACCAGCAGATCAACCAGGATCTCAACATCCAGCTTCTGAAGGACGGTTACCGGCTCGATGAAATCCCTGACGATGAAGATCTGGATCTGATCCCGCCCAAATCAGTCAACCCCACCTGCATATGCTGCCAAGCCACCACCTCCTCAGCCTGCCAGATCCAATAGCCCCTCCCGCAATATACGCCATGACTCCGCCCTCTGCAGTGAGCTCAACTCACCACTGGGGCGGCGACAGGGAGAAAGAATGCAATGATCGGAGGGGGAGAAAAAAACAGAAGAATAGGTCTATTGGAATTAGTGTGGATATGAAAAGGGTGAAAATGCACAAAATATGTACTCCTATGGTAGGACATGTGCGTACATTTGTTTGTTATGTTCCAGTGAGGTACTAGGTTTTTTTGTCTGAGTAGTATTCTTGGAATAAACACAAGGACAAAAGAAGGACTCAAGAATGCAGTGTTTTCAAGATTGCCTGTTGTGGAATAGATCTTTGCCTTTGCATGTCCTCctgaaagtctttgtttctgttACGGTATGTATGGAGGGATTAACAGCCAATGCACTGTGAGCATGGGAAAATAACAAACATTTGATTGAACAGAATGAATAGTTGTCTGAGTGTGTATCATGTCCAAAATTAAACAACTTCAGCATTACAACATTTAAAA
>XM_021610212.2
AGACCCGGAAGATGGTATCGACGTATCTCTGTCTGTTTTGGTTGAGTCACCTCGGACCATGCCTTAACCACTGATGCCTTACTGTGTGGTTATAGGCAGAAACCAACTAGAATCATGCAAACTAACAGATAATTCTTGCGACAAACTAAGGCCTTATTTGATTATTTTTATGCTTACAAATGTTTAGATCTTACATCGGTTTGGCGGTGTAACGAACGATTCGTCAAAATGATGGAGGAAGAAATGGATAGGTTCCAAGTACCCCCAGTAACAGAGACACAGCCCTTGCAGGACCCAGCAGCATCTGACACCTCTGAGGCTGACTCTGACACTAGAGAAGGTGAGACGGTGGCCATGAACTACAAGCCCTCCCCACTGCAAGTGAAAATAGagaaacagagagagctggCCAGGAAGGGCTCAGTAAAGAATAGCCCCGTCAACCACCAACCAAAGAAGAACAACGTCATGGCCAGAACACGTTTGGTGGTGCCAAACAAAGGCTACTCCTCTTTAGACCAGACCAGCCCGGATGAGAAGCCCCTGGTAACGCTGGACACAGACAGTGATGATGACTTTGACATGTCCAGATACTCTTCGTCTGGATACTCCTCCGCCGAGCAGATCAACCAGGATCTCAACATCCAGCTTCTGAAGGACGGTTACCGGCTCGATGAAATCCCTGACGATGAAGATCTGGATCTGATCCCGCCCAAATCAGTCAACCCCACCTGCATATGCTGCCAAGCCACCACCTCCTCAGCCTGCCAGATCCAATAGCCCCTCCCGCAATATACGCCATGACTCCGCCCTCTGCAGTGAGCTCAACTCACCACTGGGGCGGCGACAGGGAGAAAGAATGCAATGATCGGAGGGGGAGAAAAAAACAGAAGAATAGGTCTATTGGAATTAGTGTGGATATGAAAAGGGTGAAAATGCACAAAATATGTACTCCTATGGTAGGACATGTGCGTACATTTGTTTGTTATGTTCCAGTGAGGTACTAGGTTTTTTTGTCTGAGTAGTATTCTTGGAATAAACACAAGGACAAAAGAAGGACTCAAGAATGCAGTGTTTTCAAGATTGCCTGTTGTGGAATAGATCTTTGCCTTTGCATGTCCTCctgaaagtctttgtttctgttACGGTATGTATGGAGGGATTAACAGCCAATGCACTGTGAGCATGGGAAAATAACAAACATTTGATTGAACAGAATGAATAGTTGTCTGAGTGTGTATCATGTCCAAAATTAAACAACTTCAGCATTACAACATTTAAAA

Function

NR:

description
protein FAM219A-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610211.2 False 1304 mRNA 0.46 6 65720054 65744788
XM_021610212.2 True 1283 mRNA 0.46 6 65720054 65744788

Neighbor

gene id symbol gene type direction distance location
LOC118965313 NA coding downstream 32068 65681451 ~ 65687986 (-)
sox12 sox12 coding downstream 126725 65586599 ~ 65593329 (-)
LOC110528269 trib3 coding downstream 241741 65467736 ~ 65478313 (-)
LOC118965360 rbck1 coding downstream 262794 65451173 ~ 65457260 (-)
LOC110529000 NA coding downstream 357555 65360070 ~ 65362499 (-)
LOC110528277 NA coding upstream 42153 65785569 ~ 65796175 (-)
LOC110528278 LOC106583321 coding upstream 66653 65811441 ~ 65857952 (-)
LOC110528280 un119 coding upstream 122705 65867493 ~ 65871588 (-)
LOC110528283 tctn1 coding upstream 184392 65929180 ~ 65942126 (-)
si:dkey-81j8.6 LOC106583314 coding upstream 197413 65942201 ~ 65970185 (-)
G637412 NA non-coding downstream 3612 65716216 ~ 65716442 (-)
G637403 NA non-coding downstream 14825 65705020 ~ 65705229 (-)
G636722 NA non-coding downstream 141665 65499217 ~ 65578389 (-)
G636721 NA non-coding downstream 206141 65498708 ~ 65513913 (-)
G637441 NA non-coding upstream 14685 65759473 ~ 65759694 (-)
G637452 NA non-coding upstream 28921 65773709 ~ 65774110 (-)
G637454 NA non-coding upstream 31400 65776188 ~ 65776425 (-)
G637531 NA non-coding upstream 165244 65910032 ~ 65917898 (-)
G636719 NA other downstream 224897 65493790 ~ 65495157 (-)
G636571 LOC106583344 other downstream 483173 65209760 ~ 65236881 (-)
G636533 LOC106583345 other downstream 584259 65135538 ~ 65135795 (-)
G636532 LOC106583345 other downstream 585309 65134250 ~ 65134745 (-)
LOC110528239 LOC106583268 other downstream 1048038 64669731 ~ 64689634 (-)
G637495 NA other upstream 136224 65881012 ~ 65882556 (-)
G637504 LOC106583318 other upstream 142148 65886936 ~ 65892402 (-)
G637669 NA other upstream 431172 66175960 ~ 66177895 (-)
G637722 NA other upstream 531994 66276782 ~ 66277080 (-)
LOC110528300 LOC106583565 other upstream 1310866 67055190 ~ 67079126 (-)

Expression


Co-expression Network