LOC110528277


Basic Information

Item Value
gene id LOC110528277
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 65785569 ~ 65796175 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474225.2
ACATTTATTTTGTAGATTAATCCACAGGTTCATTTAAATTTGCTGGCGTAACAGTTGACAAATCACGCGATTTAGTAggctacaagcatttcgctgcgcGAGGCGCTGGGGGGCAAGAGCAGCAGACTGGATGGAGCCAGACAGTCCGTGTGCTAGAAGCAGTTGACAATATTCGGACGCTTATCCAGAGAAGAATTAGGCTACAAATCTACATCTGTGTTCAAGAGGTGGATGCCCAGGCCAGTCCTGCAAGGGTGATAGGCTTGGGAAGACTCCTGCTGTgatgcagcagcagcaacagcagcagaaaCACCCCCTCTGCTGATCCAGACGGTTCGTTCTGCTGCCTCTGGACAACTGGCATGCTTCTGTCTGCCCTCTTGGCCAATAAGACATTCAGAGAGAAGGGgtggtttgttgttgttttgaaagtGGTGCTTACTTTGGTGTACTATGTCATCTATttagtatgatacagtatgttttgttctgcaaaaaaaagtaatcatatgTTTGCAATTTGTTCTATATGTTACAAATCTGTTGCGCTTAAAATCCCGGactgcttcttttttttttgacaGGGGCTCTAATGGTTGTCAAACCACAAGGATATGAGGGTGGGGTAACCGCTGAAGCAAACTGGCAGAGACCAGTCCAGATCACGTCTAGCCTGCGCTACCATCACTGTGGACCATCATCATGGAGAGTCAGCGGCATCTTTTTGACCCTTGGGGTCACGATCGCCGGGCCCTGATTGGCCCTGAGACAAAGCAGGGACAGTGTTGAAGACTCACTCCAGAGAAaatagaaagagagcgagagatttgAAAACTATAGCACAGTCAATCTCTCCAATACAGTGCTGTATCACTGGAACACATTTTACTTTTGTTTAAGTAAATTGAGGGTTGAATTTTAATTTCCCCCCAAAATGAAAGCACATACTCCTCCTACCTGGGACTGATAGTACCATAATGCATGGATGACATCTGTCCAGCATAAGTATCACAACATCGAGAGCTCTGAGCCCTCACATTTTAAATCATCCTAGTTGGTGCCAGTTTACCCACCCATAGATATCAGAATACATTCACACCATATACTCTTTTATTCTGAGACTATTTCACATTGCACAGGTGGACTATGGAGCAAGTCTGATCACTATAAACAGTCAAACAGAGAGCCACTCTAGTGTTGCGTGACTCGGGTTCTGTTTGGTTTGTGTCATGGAGTCTGAGGAGAGCCTGGGACTGTCGACTGCAGCTGTGGTGGCCATCACCTGCAATGCCTTGGTGgccatcctcctcctcgtcctcttccTCATTCTCTACAAGGCCTGTAAGGTGCCCTCCAGCCAGGAGAGGGTACCTGTGCTGGCGGTTCCTACTGGGCAGACGCAACAGAGCAGCGAACACAAGTACTTGCTGACTTCATGACTggtagccagagagagagagtgagcaccACAGTGTATACATAGGTCTCAGGGAGGTACTGTATACTAGAGGAGTAGACCGATCCCAGGTGTGTTTATTAGGgctgggacgataccagtatcgcgatactagttagtattgtggcaaggaaacaaagcaCAAAGCGGATGTCACTTCTGTTGGAAAACCGCCCTA
>TU724573
GCAAGAGCAGCAGACTGGATGGAGCCAGACAGTCCGTGTGCTAGAAGCAGTTGACAATATTCGGACGCTTATCCAGAGAAGAATTAGGCTACAAATCTACATCTGTGTTCAAGAGGTGGATGCCCAGGCCAGTCCTGCAAGGGTGATAGGCTTGGGAAGACTCCTGCTGTgatgcagcagcagcaacagcagcagaaaCACCCCCTCTGCTGATCCAGACGGTTCGTTCTGCTGCCTCTGGACAACTGGCATGCTTCTGTCTGCCCTCTTGGCCAATAAGACATTCAGAGAGAAGGGgtggtttgttgttgttttgaaagtGGTGCTTACTTTGGTGTACTATGTCATCTATttagtatgatacagtatgttttgttctgcaaaaaaaagtaatcatatgTTTGCAATTTGTTCTATATGTTACAAATCTGTTGCGCTTAAAATCCCGGactgcttcttttttttttgacaGGGGCTCTAATGGTTGTCAAACCACAAGGATATGAGGGTGGGGTAACCGCTGAAGCAAACTGGCAGAGACCAGTCCAGATCACGTCTAGCCTGCGCTACCATCACTGTGGACCATCATCATGGAGAGTCAGCGGCATCTTTTTGACCCTTGGGGTCACGATCGCCGGGCCCTGATTGGCCCTGAGACAAAGCAGGGACAGTGTTGAAGACTCACTCCAGAGAAaatagaaagagagcgagagatttgAAAACTATAGCACAGTCAATCTCTCCAATACAGTGCTGTATCACTGGAACACATTTTACTTTTGTTTAAGTAAATTGAGGGTTGAATTTTAATTTCCCCCCAAAATGAAAGCACATACTCCTCCTACCTGGGACTGATAGTACCATAATGCATGGATGACATCTGTCCAGCATAAGTATCACAACATCGAGAGCTCTGAGCCCTCACATTTTAAATCATCCTAGTTGGTGCCAGTTTACCCACCCATAGATATCAGAATACATTCACACCATATACTCTTTTATTCTGAGACTATTTCACATTGCACAGGTGGACTATGGAGCAAGTCTGATCACTATAAACAGTCAAACAGAGAGCCACTCTAGTGTTGCGTGACTCGGGTTCTGTTTGGTTTGTGTCATGGAGTCTGAGGAGAGCCTGGGACTGTCGACTGCAGCTGTGGTGGCCATCACCTGCAATGCCTTGGTGgccatcctcctcctcgtcctcttccTCATTCTCTACAAGGCCTGTAAGGTGCCCTCCAGCCAGGAGAGGGTACCTGTGCTGGCGGTTCCTACTGGGCAGACGCAACAGAGCAGCGAACACAAGTACTTGCTGACTTCATGACTggtagccagagagagagagtgagcaccACAGTGTATACATAGGTCTCAGGGAGGTACTGTATACTAGAGGAGTAGACCGATCCCAGGTGTGTTTATTAGGgctgggacgataccagtatcgcgatactagttagtattgtggcaaggaaacaaagcaCAAAGCGGATGTCACTTCTGTTGGAAAACCGCCCTAAtattggaaacaaacatcattatgttgtcatccagagtcataTTTATtatccaagctatagcacacactATTTTACGTatagcaggtttttaaaggaccacagagtttggtctgcttcgtgttttcatttttgccatcaCAAAAATATTGCGATACCGATATCATTCCGGCCCTACTTTTTATACTGCCTTGCAAGGCTAGTAGGAAGAGCCAGAAGACAAGGATCCCTCTTTGAAGACAAGGACCCCTCAAAACAAGGATCAAAGTATCACTGTTCCTCTGACAACCAGCAGCTGAATGAATGGAACAACCTGTAACAGTTTATTATGGGACAAGTTGCCGTTATAAACTCTACTTTTATATTGTGTCCTATGACCTTCCTGGTCCCTGTTGGAACGGATATACATGAAGGAATGCAGGCATGAAtgtgttgcacacacacacacaaacaaccccATGAGGTGAAAGACACATGGTCTACCAATAGGTTTGGTTAATTCATGGAGTCAGAGAGGCTAGAACGTTGAGTGTCTGAGGACTGGACTGATCCGTTCTCTGAGGCTTCTAAATTTAGCTTCTCATATCAGACACATTTTCTCGGGAAGAAAAGCAAGCCTGTGTGTATTGGCAGTAACCACGGCAGTGGCCTGTATTTGAAGCATAGTGAGTGTTATGTATGGAGCTGAGAGGCTTCGCTCGCTTTGTCCTCTTAAATATGGTCCTCAGTACTAGCCTGCTTTGGCACATTGTCAAAGACAGCCCACACATTTTAGTGGGAGAGCACTCCCACAATTCCCAGCCTAGCCAAGGCATTATACATATTGTGATGGATATGAAAAGACACTATCAGAAAATCCCCGAAAGTGAACTTGAATAATGTGAAGTAAATGAATCACAGTAAGGGGGCGAGGGCCCTGTACACATGCACTGACATCAAAGAGCTTGAGGTCCAGGCTACTGGTTGAAGTAGCAGAGTTGTGGGTGCTtgcttttgatttgatttgagccatAGTCAGTCAGTATAGTGGCGGCCACTTCAGTGAAGGGCAAGATCGTTAAGAGAGAGTGATGGGCAACTTTAGAAAACATAGGCAAAATAATGAGTGGAGTGGCTCACATTCAAGTTCTTCCCGTAGGTGTGTGCAAATAATGGCCATTTCAAAAGTTTAATTCAATATTCAATGGTTGCTAAGTGTTCAACCAAAGCATCATAACtgtaataaatgtttgttttgtttattgctGAGCCCTAAGAGCAGACAATggatattatgtgacttgttctgGTGAGGACAATAGCATCTCTTTCTCGTCACAACAGAGAGAACATGGAATGATGAATACTTTAATAAATATTTCCAAACAAACTGAA
>TU724574
GCAAGAGCAGCAGACTGGATGGAGCCAGACAGTCCGTGTGCTAGAAGCAGTTGACAATATTCGGACGCTTATCCAGAGAAGAATTAGGCTACAAATCTACATCTGTGTTCAAGAGGTGGATGCCCAGGCCAGTCCTGCAAGGGTGATAGGCTTGGGAAGACTCCTGCTGTgatgcagcagcagcaacagcagcagaaaCACCCCCTCTGCTGATCCAGACGGGGCTCTAATGGTTGTCAAACCACAAGGATATGAGGGTGGGGTAACCGCTGAAGCAAACTGGCAGAGACCAGTCCAGATCACGTCTAGCCTGCGCTACCATCACTGTGGACCATCATCATGGAGAGTCAGCGGCATCTTTTTGACCCTTGGGGTCACGATCGCCGGGCCCTGATTGGCCCTGAGACAAAGCAGGGACAGTGTTGAAGACTCACTCCAGAGAAaatagaaagagagcgagagatttgAAAACTATAGCACAGTCAATCTCTCCAATACAGTGCTGTATCACTGGAACACATTTTACTTTTGTTTAAGTAAATTGAGGGTTGAATTTTAATTTCCCCCCAAAATGAAAGCACATACTCCTCCTACCTGGGACTGATAGTACCATAATGCATGGATGACATCTGTCCAGCATAAGTATCACAACATCGAGAGCTCTGAGCCCTCACATTTTAAATCATCCTAGTTGGTGCCAGTTTACCCACCCATAGATATCAGAATACATTCACACCATATACTCTTTTATTCTGAGACTATTTCACATTGCACAGGTGGACTATGGAGCAAGTCTGATCACTATAAACAGTCAAACAGAGAGCCACTCTAGTGTTGCGTGACTCGGGTTCTGTTTGGTTTGTGTCATGGAGTCTGAGGAGAGCCTGGGACTGTCGACTGCAGCTGTGGTGGCCATCACCTGCAATGCCTTGGTGgccatcctcctcctcgtcctcttccTCATTCTCTACAAGGCCTGTAAGGTGCCCTCCAGCCAGGAGAGGGTACCTGTGCTGGCGGTTCCTACTGGGCAGACGCAACAGAGCAGCGAACACAAGTACTTGCTGACTTCATGACTggtagccagagagagagagtgagcaccACAGTGTATACATAGGTCTCAGGGAGGTACTGTATACTAGAGGAGTAGACCGATCCCAGGTGTGTTTATTAGGgctgggacgataccagtatcgcgatactagttagtattgtggcaaggaaacaaagcaCAAAGCGGATGTCACTTCTGTTGGAAAACCGCCCTAAtattggaaacaaacatcattatgttgtcatccagagtcataTTTATtatccaagctatagcacacactATTTTACGTatagcaggtttttaaaggaccacagagtttggtctgcttcgtgttttcatttttgccatcaCAAAAATATTGCGATACCGATATCATTCCGGCCCTACTTTTTATACTGCCTTGCAAGGCTAGTAGGAAGAGCCAGAAGACAAGGATCCCTCTTTGAAGACAAGGACCCCTCAAAACAAGGATCAAAGTATCACTGTTCCTCTGACAACCAGCAGCTGAATGAATGGAACAACCTGTAACAGTTTATTATGGGACAAGTTGCCGTTATAAACTCTACTTTTATATTGTGTCCTATGACCTTCCTGGTCCCTGTTGGAACGGATATACATGAAGGAATGCAGGCATGAAtgtgttgcacacacacacacaaacaaccccATGAGGTGAAAGACACATGGTCTACCAATAGGTTTGGTTAATTCATGGAGTCAGAGAGGCTAGAACGTTGAGTGTCTGAGGACTGGACTGATCCGTTCTCTGAGGCTTCTAAATTTAGCTTCTCATATCAGACACATTTTCTCGGGAAGAAAAGCAAGCCTGTGTGTATTGGCAGTAACCACGGCAGTGGCCTGTATTTGAAGCATAGTGAGTGTTATGTATGGAGCTGAGAGGCTTCGCTCGCTTTGTCCTCTTAAATATGGTCCTCAGTACTAGCCTGCTTTGGCACATTGTCAAAGACAGCCCACACATTTTAGTGGGAGAGCACTCCCACAATTCCCAGCCTAGCCAAGGCATTATACATATTGTGATGGATATGAAAAGACACTATCAGAAAATCCCCGAAAGTGAACTTGAATAATGTGAAGTAAATGAATCACAGTAAGGGGGCGAGGGCCCTGTACACATGCACTGACATCAAAGAGCTTGAGGTCCAGGCTACTGGTTGAAGTAGCAGAGTTGTGGGTGCTtgcttttgatttgatttgagccatAGTCAGTCAGTATAGTGGCGGCCACTTCAGTGAAGGGCAAGATCGTTAAGAGAGAGTGATGGGCAACTTTAGAAAACATAGGCAAAATAATGAGTGGAGTGGCTCACATTCAAGTTCTTCCCGTAGGTGTGTGCAAATAATGGCCATTTCAAAAGTTTAATTCAATATTCAATGGTTGCTAAGTGTTCAACCAAAGCATCATAACtgtaataaatgtttgttttgtttattgctGAGCCCTAAGAGCAGACAATggatattatgtgacttgttctgGTGAGGACAATAGCATCTCTTTCTCGTCACAACAGAGAGAACATGGAATGATGAATACTTTAATAAATATTTCCAAACAAACTGAA
>TU724575
GCAAGAGCAGCAGACTGGATGGAGCCAGACAGTCCGTGTGCTAGAAGCAGTTGACAATATTCGGACGCTTATCCAGAGAAGAATTAGGCTACAAATCTACATCTGTGTTCAAGAGGGGTGGGGTAACCGCTGAAGCAAACTGGCAGAGACCAGTCCAGATCACGTCTAGCCTGCGCTACCATCACTGTGGACCATCATCATGGAGAGTCAGCGGCATCTTTTTGACCCTTGGGGTCACGATCGCCGGGCCCTGATTGGCCCTGAGACAAAGCAGGGACAGTGTTGAAGACTCACTCCAGAGAAaatagaaagagagcgagagatttgAAAACTATAGCACAGTCAATCTCTCCAATACAGTGCTGTATCACTGGAACACATTTTACTTTTGTTTAAGTAAATTGAGGGTTGAATTTTAATTTCCCCCCAAAATGAAAGCACATACTCCTCCTACCTGGGACTGATAGTACCATAATGCATGGATGACATCTGTCCAGCATAAGTATCACAACATCGAGAGCTCTGAGCCCTCACATTTTAAATCATCCTAGTTGGTGCCAGTTTACCCACCCATAGATATCAGAATACATTCACACCATATACTCTTTTATTCTGAGACTATTTCACATTGCACAGGTGGACTATGGAGCAAGTCTGATCACTATAAACAGTCAAACAGAGAGCCACTCTAGTGTTGCGTGACTCGGGTTCTGTTTGGTTTGTGTCATGGAGTCTGAGGAGAGCCTGGGACTGTCGACTGCAGCTGTGGTGGCCATCACCTGCAATGCCTTGGTGgccatcctcctcctcgtcctcttccTCATTCTCTACAAGGCCTGTAAGGTGCCCTCCAGCCAGGAGAGGGTACCTGTGCTGGCGGTTCCTACTGGGCAGACGCAACAGAGCAGCGAACACAAGTACTTGCTGACTTCATGACTggtagccagagagagagagtgagcaccACAGTGTATACATAGGTCTCAGGGAGGTACTGTATACTAGAGGAGTAGACCGATCCCAGGTGTGTTTATTAGGgctgggacgataccagtatcgcgatactagttagtattgtggcaaggaaacaaagcaCAAAGCGGATGTCACTTCTGTTGGAAAACCGCCCTAAtattggaaacaaacatcattatgttgtcatccagagtcataTTTATtatccaagctatagcacacactATTTTACGTatagcaggtttttaaaggaccacagagtttggtctgcttcgtgttttcatttttgccatcaCAAAAATATTGCGATACCGATATCATTCCGGCCCTACTTTTTATACTGCCTTGCAAGGCTAGTAGGAAGAGCCAGAAGACAAGGATCCCTCTTTGAAGACAAGGACCCCTCAAAACAAGGATCAAAGTATCACTGTTCCTCTGACAACCAGCAGCTGAATGAATGGAACAACCTGTAACAGTTTATTATGGGACAAGTTGCCGTTATAAACTCTACTTTTATATTGTGTCCTATGACCTTCCTGGTCCCTGTTGGAACGGATATACATGAAGGAATGCAGGCATGAAtgtgttgcacacacacacacaaacaaccccATGAGGTGAAAGACACATGGTCTACCAATAGGTTTGGTTAATTCATGGAGTCAGAGAGGCTAGAACGTTGAGTGTCTGAGGACTGGACTGATCCGTTCTCTGAGGCTTCTAAATTTAGCTTCTCATATCAGACACATTTTCTCGGGAAGAAAAGCAAGCCTGTGTGTATTGGCAGTAACCACGGCAGTGGCCTGTATTTGAAGCATAGTGAGTGTTATGTATGGAGCTGAGAGGCTTCGCTCGCTTTGTCCTCTTAAATATGGTCCTCAGTACTAGCCTGCTTTGGCACATTGTCAAAGACAGCCCACACATTTTAGTGGGAGAGCACTCCCACAATTCCCAGCCTAGCCAAGGCATTATACATATTGTGATGGATATGAAAAGACACTATCAGAAAATCCCCGAAAGTGAACTTGAATAATGTGAAGTAAATGAATCACAGTAAGGGGGCGAGGGCCCTGTACACATGCACTGACATCAAAGAGCTTGAGGTCCAGGCTACTGGTTGAAGTAGCAGAGTTGTGGGTGCTtgcttttgatttgatttgagccatAGTCAGTCAGTATAGTGGCGGCCACTTCAGTGAAGGGCAAGATCGTTAAGAGAGAGTGATGGGCAACTTTAGAAAACATAGGCAAAATAATGAGTGGAGTGGCTCACATTCAAGTTCTTCCCGTAGGTGTGTGCAAATAATGGCCATTTCAAAAGTTTAATTCAATATTCAATGGTTGCTAAGTGTTCAACCAAAGCATCATAACtgtaataaatgtttgttttgtttattgctGAGCCCTAAGAGCAGACAATggatattatgtgacttgttctgGTGAGGACAATAGCATCTCTTTCTCGTCACAACAGAGAGAACATGGAATGATGAATACTTTAATAAATATTTCCAAACAAACTGAA

Function

NR:

description
Adropin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474225.2 False 1634 mRNA 0.47 3 65786941 65796175
TU724573 False 2894 lncRNA 0.45 3 65785569 65796063
TU724574 False 2643 lncRNA 0.45 4 65785569 65796063
TU724575 True 2503 lncRNA 0.45 2 65785569 65796063

Neighbor

gene id symbol gene type direction distance location
LOC110528276 LOC106583323 coding downstream 42153 65720054 ~ 65744788 (-)
LOC118965313 NA coding downstream 98955 65681451 ~ 65687986 (-)
sox12 sox12 coding downstream 193612 65586599 ~ 65593329 (-)
LOC110528269 trib3 coding downstream 308628 65467736 ~ 65478313 (-)
LOC118965360 rbck1 coding downstream 329681 65451173 ~ 65457260 (-)
LOC110528278 LOC106583321 coding upstream 15266 65811441 ~ 65857952 (-)
LOC110528280 un119 coding upstream 71318 65867493 ~ 65871588 (-)
LOC110528283 tctn1 coding upstream 133005 65929180 ~ 65942126 (-)
si:dkey-81j8.6 LOC106583314 coding upstream 146026 65942201 ~ 65970185 (-)
r3hcc1 r3hcc1 coding upstream 284581 66080756 ~ 66118473 (-)
G637454 NA non-coding downstream 10516 65776188 ~ 65776425 (-)
G637452 NA non-coding downstream 12831 65773709 ~ 65774110 (-)
G637441 NA non-coding downstream 27247 65759473 ~ 65759694 (-)
G637424 NA non-coding downstream 51592 65735012 ~ 65735349 (-)
G637412 NA non-coding downstream 70499 65716216 ~ 65716442 (-)
G637531 NA non-coding upstream 113857 65910032 ~ 65917898 (-)
G637533 NA non-coding upstream 118687 65914862 ~ 65922845 (-)
G637566 NA non-coding upstream 195855 65992030 ~ 65993165 (-)
G637595 NA non-coding upstream 243027 66039202 ~ 66065481 (-)
G637634 NA non-coding upstream 336289 66132464 ~ 66133957 (-)
G636719 NA other downstream 291784 65493790 ~ 65495157 (-)
G636571 LOC106583344 other downstream 550060 65209760 ~ 65236881 (-)
G636533 LOC106583345 other downstream 651146 65135538 ~ 65135795 (-)
G636532 LOC106583345 other downstream 652196 65134250 ~ 65134745 (-)
LOC110528239 LOC106583268 other downstream 1114925 64669731 ~ 64689634 (-)
G637495 NA other upstream 84837 65881012 ~ 65882556 (-)
G637504 LOC106583318 other upstream 90761 65886936 ~ 65892402 (-)
G637669 NA other upstream 379785 66175960 ~ 66177895 (-)
G637722 NA other upstream 480607 66276782 ~ 66277080 (-)
LOC110528300 LOC106583565 other upstream 1259479 67055190 ~ 67079126 (-)

Expression


Co-expression Network