LOC110528278 (LOC106583321)


Basic Information

Item Value
gene id LOC110528278
gene name LOC106583321
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 65811441 ~ 65857952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610213.2
CACACCCCTCCGCCACCCTGAGTCTGCTACTCACTGCCTTTCCTCACCTCATAGTCGAGAACAGAGGAACGGAATGGATACGGAAGGGAGCCAAAGCAGCCTGTCCTCGGTGGACAACTCCCCCCACGACCCTTGCAAAATGTTCATCGGGGGTCTCAGTTGGCAGACAACACAAGAGGGTTTGaatgaatacttctgtaaattcGGCGAGGTGAAGGAGTGTATGGTGATGCGAGATCCAGTTACGAAGAGATCAAGGGGATTCGGGTTTGTCACATACATAGACCAAGCTGGTGTGGATAAAGTTTTGGCGCAAAACAGACATGAGCTGGATTCTAAAACAaTTGATCCCAAGGTAGCGTTTCCTCGTAGAGCCCAGCCCAAGCTGGTGACCAGGACAAAGAAGATATTTGTGGGAGGTCTCTCTGTGAACACAACCATCGAAGACGTCAAGCAGTACTTTGACCAGTTTGGAAAGgtTGATGATGCCATGCTCATGTTCGACAAAACCACCAACAGACACAGAGGTTTCGGCTTTGTGACCTTTGAGAATGAAGACATGGTGGAAAAAGTGTGTGAGATCCACTTCCAcgaaatcaacaacaaaatgGTGGAGTGCAAGAAAGCCCAGCCCaaggaagtgatgtcaccgaCGGGTACGGCTCGAGGTCGTGCCAGGATTATGCCCTACGGCGTGGACGCTTTCATGCTGGGGATCGGCATGCTGAGCTACCCAGGCTTCCAAGCAGCTACGTACGCTAGCCGCAGCTACCCTGGCATCGCTCCTGGATACACCTACCAGTTCCCTGAATTCCATTTAGAGAGGACCCCCCTTCTGACATCACCCCACCCCTCTGAGCTCACAGcCATTCCACTGTCAGCCTACGGACCAATGGCAGCGGCAGCAGCAGCTGCTATGAGAGgTTCCACCCAGTCACGTAACTCAGGCTACCTGGGCACCAGCAGCCCTGGGCCAATGGCTGACCTGTATGCAGCAGCAAGTCAGGACTCAGCAGTCAGCAGCTATCTCAGCACAGCCAGTCCTGGCCCCAACTCAGGATTTGGCCACGGTCTCGGGGGTCCTCTGATCGCAGCCTTTACCAACGGGTACCACTAAGTAGATTCAGCCAATCACCGGACACGGAAGGAGGTTTCTTCTGCTGACGAGCCAATCAAACTGCTGTGTGCCTACCCATGGCACAATCCAATTGGCAGCCACAGGTCAAACCCCACCCCTGGCTCCCTCTGAATCCACCCACCGACTGAAGaagatattttatattttagactcCTGTATCTTGTATTACTGTACTAATATCACTTCCTCTTCTCAGTCCCCCCTTGTTTCTTCTATTCTTTACCTTCACGTAGGTTTATTTAATTAGATTCCAATGCTGTTTCTTTTTAAAAATATTGTTCTGACAGAAAAATACATGTGAAAAGAACGACTGTGGGTTGCGCTCATGGCAaacacagattctgtcagataTATTTTTACTTTATATCTGAGGAATTTCTATTTAATCACAATGTTTTGATTTATTGTCTGCTCCTTTGACCTCCCTTTAATGTGTTActgaggtgagatggagagaacgaggagaatagaggggtagagagaactGAAATGGTGTGTGGGATTGGGTCTCCTTGTCAAAAGGAGTTCCTAACCCATTTTAAACAGTGGAAGAACAAAGAAATGATGTCCCAGGAAACATGAAAAGAAaactaaaatgtatattttgatagtttttaaaacaaaacatttgtaaTATTGTTATTAATATTGAACGTAATGGTGATAATCGGTAAGGTATTTTATTCCGTAATTGGTTTTGAAAGGAATATTTTATTTCCTTCCTGTAAAATATTGTATATAGAGTTTGAGGGGGGGTTGTACTTTGATTGGCAGGTAAGGTTACTATTAATCGTTCGGGCGCCATTTAAACTGGAAGTCTTTTTAACTTCTACTTGAAAGTGGCTATCCCCTAAGCATTTGTTTAGTGTTTAGGCCAACAACATGCATGAGCAGGGTTGAAGACTAGATGATATTTGTAAATAAGTCGGAATGATAAGATCCTATTCATTAGAAATTGGTTTCAGAGATGATCCAAAAGTAACAACAAGAGAACACGCTTGAATTTACATGCGGTTGAGTTTCATTCCGTGTCTTACTGTTAACATTTATTAACTGTAGTGTGTGAATTCCAAATCTGCATTTTGTCATACAGCGCTACAACAGAGTTATTTTTGATGTGTGCCAGTAACCGGTTTCTATTGAATCGTGCCCCTTAAAGGCACAGTCTTATCACGTCACATGAAcataaaaatataattacttgaatGGGGATTTCCATTCTAGTAATTCTAGTTATATGGACATGACATCCACGTATCCCTCAGAAGAACTTGAATTGGAACAGATGATTGGATAAGGAAAAACTTAAATGAGGCCCTGTTTTTTTAATATATTGGCTATGGTGAGGGTGCATGGGTGGGGTTAAGGGGGATTGGTGGGATATATTTTGTGCTATTTTAGGTATATTTTGCGCTATTTTCCTTCATtatgttttttctttctttcttggtGTTCAATGTACAGGTCATATGGACCATAGAAACAAATGAAGGACTTACTTAACAAAGCAATTGACTCTTAAAATACTATTACATCATGGTTGTATTTGTCCTCTGATGACTTTTGAAAGTGCGAGTGTCATTatgtgtgaaagtgtgtttgtgtgtgagtgtttgtgtacaCGCACAATAGTGAGGTGAAGTATGGAACTAGCTACATTCGACAGTTGAGATGCATTTTTAAAATTTTGGTACAGCCATTTTGGTACTGATATGTTTGCCTGGTTCCATTTAGTCTAACACCCCGCACATAGGGACTAGGGCTAGATATATCCAAATAGAATAGGGCCTCTGTCCCAGTCAGTACAGAAAATAGGTATACACAGACCAGTAgctggaagggaggaggagacagagtgTCAAAGCTATTTCAATGAGAATCACATGAATTTTGTATATTTTCCTCAAAGTCTTCCAATAAACATGAAAAAGAATCTCCCATTTTGAACTGGCTAGTACTGCCCTTTTCCGACTGGCTGGGTCACTACACAAAACTACTGCTGGACACGAACACTGTAACTTTTTAACTTACAAAAAGCAATAAGTTATTTTTTACCTTAGAAATGATAATGATATTAATAGCAATATGAGTATTGATAATTCCATGGCATTAAGACTTATTTTCAGaacaaaaaaaactatatttttcttTTGTACGATTTCGTTCCCCATGTACAATAATGATTCAGTGATTTTTAAGACACTGGTGTTTTTTGTTTGTGTTGATGCTTTCTTCAGGGTCGGGAAAGGGGCAAGGCCTTGGTTGTTAAAACTCCAAGGTCTTTACCAACACTGTAACTAAACTTTTATTTGGACTGTTCCCCGCCCGCTTTGTCATATGTATTTCTTATTTTGTTCTACTCTGGAAATTTCAATTTTACAATTCCTAATAAATTATTTTAAAGCATTCCACTGA
>XM_021610214.2
CACACCCCTCCGCCACCCTGAGTCTGCTACTCACTGCCTTTCCTCACCTCATAGTCGAGAACAGAGGAACGGAATGGATACGGAAGGGAGCCAAAGCAGCCTGTCCTCGGTGGACAACTCCCCCCACGACCCTTGCAAAATGTTCATCGGGGGTCTCAGTTGGCAGACAACACAAGAGGGTTTGaatgaatacttctgtaaattcGGCGAGGTGAAGGAGTGTATGGTGATGCGAGATCCAGTTACGAAGAGATCAAGGGGATTCGGGTTTGTCACATACATAGACCAAGCTGGTGTGGATAAAGTTTTGGCGCAAAACAGACATGAGCTGGATTCTAAAACAaTTGATCCCAAGGTAGCGTTTCCTCGTAGAGCCCAGCCCAAGCTGGTGACCAGGACAAAGAAGATATTTGTGGGAGGTCTCTCTGTGAACACAACCATCGAAGACGTCAAGCAGTACTTTGACCAGTTTGGAAAGgtTGATGATGCCATGCTCATGTTCGACAAAACCACCAACAGACACAGAGGTTTCGGCTTTGTGACCTTTGAGAATGAAGACATGGTGGAAAAAGTGTGTGAGATCCACTTCCAcgaaatcaacaacaaaatgGTGGAGTGCAAGAAAGCCCAGCCCaaggaagtgatgtcaccgaCGGGTACGGCTCGAGGTCGTGCCAGGATTATGCCCTACGGCGTGGACGCTTTCATGCTGGGGATCGGCATGCTGAGCTACCCAGGCTTCCAAGCAGCTACGTACGCTAGCCGCAGCTACCCTGGCATCGCTCCTGGATACACCTACCAGTTCCCTGcCATTCCACTGTCAGCCTACGGACCAATGGCAGCGGCAGCAGCAGCTGCTATGAGAGgTTCCACCCAGTCACGTAACTCAGGCTACCTGGGCACCAGCAGCCCTGGGCCAATGGCTGACCTGTATGCAGCAGCAAGTCAGGACTCAGCAGTCAGCAGCTATCTCAGCACAGCCAGTCCTGGCCCCAACTCAGGATTTGGCCACGGTCTCGGGGGTCCTCTGATCGCAGCCTTTACCAACGGGTACCACTAAGTAGATTCAGCCAATCACCGGACACGGAAGGAGGTTTCTTCTGCTGACGAGCCAATCAAACTGCTGTGTGCCTACCCATGGCACAATCCAATTGGCAGCCACAGGTCAAACCCCACCCCTGGCTCCCTCTGAATCCACCCACCGACTGAAGaagatattttatattttagactcCTGTATCTTGTATTACTGTACTAATATCACTTCCTCTTCTCAGTCCCCCCTTGTTTCTTCTATTCTTTACCTTCACGTAGGTTTATTTAATTAGATTCCAATGCTGTTTCTTTTTAAAAATATTGTTCTGACAGAAAAATACATGTGAAAAGAACGACTGTGGGTTGCGCTCATGGCAaacacagattctgtcagataTATTTTTACTTTATATCTGAGGAATTTCTATTTAATCACAATGTTTTGATTTATTGTCTGCTCCTTTGACCTCCCTTTAATGTGTTActgaggtgagatggagagaacgaggagaatagaggggtagagagaactGAAATGGTGTGTGGGATTGGGTCTCCTTGTCAAAAGGAGTTCCTAACCCATTTTAAACAGTGGAAGAACAAAGAAATGATGTCCCAGGAAACATGAAAAGAAaactaaaatgtatattttgatagtttttaaaacaaaacatttgtaaTATTGTTATTAATATTGAACGTAATGGTGATAATCGGTAAGGTATTTTATTCCGTAATTGGTTTTGAAAGGAATATTTTATTTCCTTCCTGTAAAATATTGTATATAGAGTTTGAGGGGGGGTTGTACTTTGATTGGCAGGTAAGGTTACTATTAATCGTTCGGGCGCCATTTAAACTGGAAGTCTTTTTAACTTCTACTTGAAAGTGGCTATCCCCTAAGCATTTGTTTAGTGTTTAGGCCAACAACATGCATGAGCAGGGTTGAAGACTAGATGATATTTGTAAATAAGTCGGAATGATAAGATCCTATTCATTAGAAATTGGTTTCAGAGATGATCCAAAAGTAACAACAAGAGAACACGCTTGAATTTACATGCGGTTGAGTTTCATTCCGTGTCTTACTGTTAACATTTATTAACTGTAGTGTGTGAATTCCAAATCTGCATTTTGTCATACAGCGCTACAACAGAGTTATTTTTGATGTGTGCCAGTAACCGGTTTCTATTGAATCGTGCCCCTTAAAGGCACAGTCTTATCACGTCACATGAAcataaaaatataattacttgaatGGGGATTTCCATTCTAGTAATTCTAGTTATATGGACATGACATCCACGTATCCCTCAGAAGAACTTGAATTGGAACAGATGATTGGATAAGGAAAAACTTAAATGAGGCCCTGTTTTTTTAATATATTGGCTATGGTGAGGGTGCATGGGTGGGGTTAAGGGGGATTGGTGGGATATATTTTGTGCTATTTTAGGTATATTTTGCGCTATTTTCCTTCATtatgttttttctttctttcttggtGTTCAATGTACAGGTCATATGGACCATAGAAACAAATGAAGGACTTACTTAACAAAGCAATTGACTCTTAAAATACTATTACATCATGGTTGTATTTGTCCTCTGATGACTTTTGAAAGTGCGAGTGTCATTatgtgtgaaagtgtgtttgtgtgtgagtgtttgtgtacaCGCACAATAGTGAGGTGAAGTATGGAACTAGCTACATTCGACAGTTGAGATGCATTTTTAAAATTTTGGTACAGCCATTTTGGTACTGATATGTTTGCCTGGTTCCATTTAGTCTAACACCCCGCACATAGGGACTAGGGCTAGATATATCCAAATAGAATAGGGCCTCTGTCCCAGTCAGTACAGAAAATAGGTATACACAGACCAGTAgctggaagggaggaggagacagagtgTCAAAGCTATTTCAATGAGAATCACATGAATTTTGTATATTTTCCTCAAAGTCTTCCAATAAACATGAAAAAGAATCTCCCATTTTGAACTGGCTAGTACTGCCCTTTTCCGACTGGCTGGGTCACTACACAAAACTACTGCTGGACACGAACACTGTAACTTTTTAACTTACAAAAAGCAATAAGTTATTTTTTACCTTAGAAATGATAATGATATTAATAGCAATATGAGTATTGATAATTCCATGGCATTAAGACTTATTTTCAGaacaaaaaaaactatatttttcttTTGTACGATTTCGTTCCCCATGTACAATAATGATTCAGTGATTTTTAAGACACTGGTGTTTTTTGTTTGTGTTGATGCTTTCTTCAGGGTCGGGAAAGGGGCAAGGCCTTGGTTGTTAAAACTCCAAGGTCTTTACCAACACTGTAACTAAACTTTTATTTGGACTGTTCCCCGCCCGCTTTGTCATATGTATTTCTTATTTTGTTCTACTCTGGAAATTTCAATTTTACAATTCCTAATAAATTATTTTAAAGCATTCCACTGA

Function

NR:

description
RNA-binding protein Musashi homolog 1-like isoform X2

GO:

id name namespace
GO:0007417 central nervous system development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14411 MSI; RNA-binding protein Musashi

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610213.2 False 3553 mRNA 0.42 14 65811441 65857952
XM_021610214.2 True 3496 mRNA 0.42 13 65811441 65857952

Neighbor

gene id symbol gene type direction distance location
LOC110528277 NA coding downstream 15266 65785569 ~ 65796175 (-)
LOC110528276 LOC106583323 coding downstream 66653 65720054 ~ 65744788 (-)
LOC118965313 NA coding downstream 123455 65681451 ~ 65687986 (-)
sox12 sox12 coding downstream 218112 65586599 ~ 65593329 (-)
LOC110528269 trib3 coding downstream 333128 65467736 ~ 65478313 (-)
LOC110528280 un119 coding upstream 9541 65867493 ~ 65871588 (-)
LOC110528283 tctn1 coding upstream 71228 65929180 ~ 65942126 (-)
si:dkey-81j8.6 LOC106583314 coding upstream 84249 65942201 ~ 65970185 (-)
r3hcc1 r3hcc1 coding upstream 222804 66080756 ~ 66118473 (-)
golga7 goga7 coding upstream 260714 66118666 ~ 66126878 (-)
G637454 NA non-coding downstream 35016 65776188 ~ 65776425 (-)
G637452 NA non-coding downstream 37331 65773709 ~ 65774110 (-)
G637441 NA non-coding downstream 51747 65759473 ~ 65759694 (-)
G637424 NA non-coding downstream 76092 65735012 ~ 65735349 (-)
G637531 NA non-coding upstream 52080 65910032 ~ 65917898 (-)
G637533 NA non-coding upstream 56910 65914862 ~ 65922845 (-)
G637566 NA non-coding upstream 134078 65992030 ~ 65993165 (-)
G637595 NA non-coding upstream 181250 66039202 ~ 66065481 (-)
G637634 NA non-coding upstream 274512 66132464 ~ 66133957 (-)
G636719 NA other downstream 316284 65493790 ~ 65495157 (-)
G636571 LOC106583344 other downstream 574560 65209760 ~ 65236881 (-)
G636533 LOC106583345 other downstream 675646 65135538 ~ 65135795 (-)
G636532 LOC106583345 other downstream 676696 65134250 ~ 65134745 (-)
LOC110528239 LOC106583268 other downstream 1139425 64669731 ~ 64689634 (-)
G637495 NA other upstream 23060 65881012 ~ 65882556 (-)
G637504 LOC106583318 other upstream 28984 65886936 ~ 65892402 (-)
G637669 NA other upstream 318008 66175960 ~ 66177895 (-)
G637722 NA other upstream 418830 66276782 ~ 66277080 (-)
LOC110528300 LOC106583565 other upstream 1197702 67055190 ~ 67079126 (-)

Expression


Co-expression Network