LOC110528283 (tctn1)


Basic Information

Item Value
gene id LOC110528283
gene name tctn1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 65929180 ~ 65942126 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610223.2
GAATACCCAGAATGCAACAGGGATCCCCTAAGCAACATAATGCTTCCAGAGATCAATATTAAAGATGGACGCTTTTGTTTGGGTGCTGATAACTTTATATACATGGCCGTTTTTTGAGTTCAGTGTAGCACAAAACACGGACGACTTCAATTATACTTTTGCACGCGCTAACGAATCTGTTATTGATTGGTTAGGTAGGCAGAATTTCACGGATTATGAGAATTCCACCGCTCTAGACGTTGAGATTGTTTCAACTGCATCGAATGTGGTTAGCACAAGAGATGGGACTGGTTTTAGTACACCGTCAACCACAGAGTCCACGCCACTGTCCATGTCTCCTCAAGTACCTCTGCCGCTATCcggctccctgcctccctctgtcACGGATGTTTCCAGAATTTGCCCGTGCGATCAATTAAAGGACCAGTGTGACCCCAACTGTTGCTGTGACCCAGATTGCAGACAGGAATTAGCTCTCTTCACCAGCTGTACAGTGAAAACAGTCTGTGGTGAGCCGAAGCTTTGCGGTCAGGACGTGGTCACCTACACTATTAGTGAAACTATAGACGGCTATGCTCAGGTGCAGAGGTCGGTCCAGCAGGAGGTTAACCTAGACGTCTTCTGCATACAGTCAACTAACTATGAGGCAGGACTGTCCCTCGCCGCTCCTGAGGTTCCTACAGCAGGGAACTTTGATGGCCTCTACAAGCACTTTGTGCAGTTCTTGTTTGGTTCTGCCAATAATGGGGCCACAACGTCTACAGTGGAACCTCTAACTTCACCTGGATACCTGTACGGAGATGTCATAGAAACGGAGGAAGAAAGCAGAGGAAGGGGGTTCTTCCGGTTGCCGGCCCCCTCTATTACAGCCCACTGCTCTGACCTGAACCCTGCAGCGTTCCTGAGGGAGCAGAGCAATAGATGCATGCGGAGCCTGGTCCTGGAGAGGGACTGTACCACCCTGCAGGCCCTGAACATGCACAGCTACACTGACCCCCGTCTCCTCTCTAAGAAGAGTGAAGATGCGCGATTTGTTGCTGTGGAGGTGACCTCCATCGTCCTGCAATCTTTGGAGGGGACTCAGACCCAGCTGAATATCACTGGTGACTTGAGCCTGGACCCGCTACTGTTGAACTCTGTGGCCCCTGACTCCGCAGTGTGCATCAATGTGGTGCTCCAGGTTGGTTACACGGTCACATACAGTGAGGCTGGAGACATTGTGAATGTGAATGCGTCCTTGGTCCTTGGAGCCATTGACCGTAACATGGTCCCAATGGAGCAGGAGTTTCAAATTGAATTCGTCCAGAATGTTGACCAAGTGGCGCTCCACTCCAGTGGGAATCCTGGTTATGTTGTGGGGCTCCCTCTACTGGCTGGATCCAAAACAGCAGATGGAATAGTTCACAGTGCTGATTCGAGGGGAGCTTTTACCCTCCTCCATGGCTCCAAACTGTCAAACTGTCTCAGAGGGCCCCATCACCGCTCCCCCGTCCTGTTCGGGGTCGACATGGTGTCAGGCTGCACGTTGAGgTTGGATGAGACTGCTAACTGCTCAGTGGTATCAGAAGTGGTTCTAGGAGTATTGAGGGGACAAAGCTTCCCCCAGTATGTGGCCTCTTTTGGGAATTCCCCATCTCAGAACCCAATGGACTGGGTGCCGATAAGGAACCAAACCAAACCTACGGAAGCTCAGAGTTGCAGTATCCCCCTGTCTCTTCACCTGGAAGTGCAATGGACCCAATATGGATCCCTGGTGAACCCGCAGGCTCAGATTGTCAGTGTCGTTGAAGTGATTTACACCAACACCAGCAACCTGGCGTTACTCTCTGGAGGCAGTCGTGTCATGTCTGTCACCAGCTCTGTGACCTTCGTACCTGTGTCTGCAGCCGCCCGGCCTGGCTTCAAGGCCTCGCCCACTATCGACGCCAAGCTGCCTTACGACTTCTTCTTCCCTTTTGTTTGAACGACTGACAGACAGAAGAGTGGGCAggtgttgcacacacacacacaagaaaccACAACTATGTTTTAATATCCTCACCAGCTTACCACTTAGAATGCATGGCCAAATACATTGCTTCATTCTTAATGATATGCTAGTGTGGATATTGATGTTGCCTCTTTAGAATCACCTGGTATACTGACCAAAATGTAGAGAATAAAAACCCTGATGTTCTCTGATGACACTCAGCTGCTGTTAGCAAccacattttatttatttgtacataGTGTAATTTAGATCAAATGAGtataaaaaaaatcaataaaGCAACATTTAATAATA
>XM_021610222.2
GGAATACCCAGAATGCAACAGGGATCCCCTAAGCAACATAATGCTTCCAGAGATCAATATTAAAGATGGACGCTTTTGTTTGGGTGCTGATAACTTTATATACATGGCCGTTTTTTGAGTTCAGTGTAGCACAAAACACGGACGACTTCAATTATACTTTTGCACGCGCTAACGAATCTGTTATTGATTGGTTAGGTAGGCAGAATTTCACGGATTATGAGAATTCCACCGCTCTAGACGTTGAGATTGTTTCAACTGCATCGAATGTGGTTAGCACAAGAGATGGGACTGGTTTTAGTACACCGTCAACCACAGAGTCCACGCCACTGTCCATGTCTCCTCAAGTACCTCTGCCGCTATCcggctccctgcctccctctgtcACGGATGTTTCCAGAATTTGCCCGTGCGATCAATTAAAGGACCAGTGTGACCCCAACTGTTGCTGTGACCCAGATTGCAGACAGGAATTAGCTCTCTTCACCAGCTGTACAGTGAAAACAGTCTGTGGTGAGCCGAAGCTTTGCGGTCAGGACGTGGTCACCTACACTATTAGTGAAACTATAGACGGCTATGCTCAGGTGCAGAGGTCGGTCCAGCAGGAGGTTAACCTAGACGTCTTCTGCATACAGTCAACTAACTATGAGGCAGGACTGTCCCTCGCCGCTCCTGAGGTTCCTACAGCAGGGAACTTTGATGGCCTCTACAAGCACTTTGTGCAGTTCTTGTTTGGTTCTGCCAATAATGGGGCCACAACGTCTACAGTGGAACCTCTAACTTCACCTGGATACCTGTACGGAGATGTCATAGAAACGGAGGAAGAAAGCAGAGGAAGGGGGTTCTTCCGGTTGCCGGCCCCCTCTATTACAGCCCACTGCTCTGACCTGAACCCTGCAGCGTTCCTGAGGGAGCAGAGCAATAGATGCATGCGGAGCCTGGTCCTGGAGAGGGACTGTACCACCCTGCAGGCCCTGAACATGCACAGCTACACTGACCCCCGTCTCCTCTCTAAGAAGAGTGAAGATGCGCGATTTGTTGCTGTGGAGGTGACCTCCATCGTCCTGCAATCTTTGGAGGGGACTCAGACCCAGCTGAATATCACTGGTGACTTGAGCCTGGACCCGCTACTGTTGAACTCTGTGGCCCCTGACTCCGCAGTGTGCATCAATGTGGTGCTCCAGGTTGGTTACACGGTCACATACAGTGAGGCTGGAGACATTGTGAATGTGAATGCGTCCTTGGTCCTTGGAGCCATTGACCGTAACATGGTCCCAATGGAGCAGGAGTTTCAAATTGAATTCGTCCAGCAGAATGTTGACCAAGTGGCGCTCCACTCCAGTGGGAATCCTGGTTATGTTGTGGGGCTCCCTCTACTGGCTGGATCCAAAACAGCAGATGGAATAGTTCACAGTGCTGATTCGAGGGGAGCTTTTACCCTCCTCCATGGCTCCAAACTGTCAAACTGTCTCAGAGGGCCCCATCACCGCTCCCCCGTCCTGTTCGGGGTCGACATGGTGTCAGGCTGCACGTTGAGgTTGGATGAGACTGCTAACTGCTCAGTGGTATCAGAAGTGGTTCTAGGAGTATTGAGGGGACAAAGCTTCCCCCAGTATGTGGCCTCTTTTGGGAATTCCCCATCTCAGAACCCAATGGACTGGGTGCCGATAAGGAACCAAACCAAACCTACGGAAGCTCAGAGTTGCAGTATCCCCCTGTCTCTTCACCTGGAAGTGCAATGGACCCAATATGGATCCCTGGTGAACCCGCAGGCTCAGATTGTCAGTGTCGTTGAAGTGATTTACACCAACACCAGCAACCTGGCGTTACTCTCTGGAGGCAGTCGTGTCATGTCTGTCACCAGCTCTGTGACCTTCGTACCTGTGTCTGCAGCCGCCCGGCCTGGCTTCAAGGCCTCGCCCACTATCGACGCCAAGCTGCCTTACGACTTCTTCTTCCCTTTTGTTTGAACGACTGACAGACAGAAGAGTGGGCAggtgttgcacacacacacacaagaaaccACAACTATGTTTTAATATCCTCACCAGCTTACCACTTAGAATGCATGGCCAAATACATTGCTTCATTCTTAATGATATGCTAGTGTGGATATTGATGTTGCCTCTTTAGAATCACCTGGTATACTGACCAAAATGTAGAGAATAAAAACCCTGATGTTCTCTGATGACACTCAGCTGCTGTTAGCAAccacattttatttatttgtacataGTGTAATTTAGATCAAATGAGtataaaaaaaatcaataaaGCAACATTTAATAATA

Function

symbol description
tctn1 Predicted to be involved in cilium assembly and protein localization to ciliary transition zone. Predicted to act upstream of or within cell projection organization. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Joubert syndrome 13. Orthologous to human TCTN1 (tectonic family member 1).

NR:

description
tectonic-1 isoform X1

GO: NA

KEGG:

id description
K19382 TCTN1_3; tectonic-1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610223.2 False 2284 mRNA 0.49 13 65929180 65942125
XM_021610222.2 True 2288 mRNA 0.49 13 65929180 65942126

Neighbor

gene id symbol gene type direction distance location
LOC110528280 un119 coding downstream 57592 65867493 ~ 65871588 (-)
LOC110528278 LOC106583321 coding downstream 71228 65811441 ~ 65857952 (-)
LOC110528277 NA coding downstream 133005 65785569 ~ 65796175 (-)
LOC110528276 LOC106583323 coding downstream 184392 65720054 ~ 65744788 (-)
LOC118965313 NA coding downstream 241194 65681451 ~ 65687986 (-)
si:dkey-81j8.6 LOC106583314 coding upstream 75 65942201 ~ 65970185 (-)
r3hcc1 r3hcc1 coding upstream 138630 66080756 ~ 66118473 (-)
golga7 goga7 coding upstream 176540 66118666 ~ 66126878 (-)
LOC110528292 LOC106565377 coding upstream 185793 66127919 ~ 66132200 (-)
LOC118965413 NA coding upstream 186113 66128239 ~ 66128367 (-)
G637533 NA non-coding downstream 6335 65914862 ~ 65922845 (-)
G637531 NA non-coding downstream 11282 65910032 ~ 65917898 (-)
G637454 NA non-coding downstream 152755 65776188 ~ 65776425 (-)
G637452 NA non-coding downstream 155070 65773709 ~ 65774110 (-)
G637566 NA non-coding upstream 49904 65992030 ~ 65993165 (-)
G637595 NA non-coding upstream 97076 66039202 ~ 66065481 (-)
G637634 NA non-coding upstream 190338 66132464 ~ 66133957 (-)
G637632 NA non-coding upstream 194336 66136462 ~ 66139801 (-)
G637660 NA non-coding upstream 220868 66162994 ~ 66163208 (-)
G637504 LOC106583318 other downstream 36778 65886936 ~ 65892402 (-)
G637495 NA other downstream 46624 65881012 ~ 65882556 (-)
G636719 NA other downstream 434023 65493790 ~ 65495157 (-)
G636571 LOC106583344 other downstream 692299 65209760 ~ 65236881 (-)
G636533 LOC106583345 other downstream 793385 65135538 ~ 65135795 (-)
G637669 NA other upstream 233834 66175960 ~ 66177895 (-)
G637722 NA other upstream 334656 66276782 ~ 66277080 (-)
LOC110528300 LOC106583565 other upstream 1113528 67055190 ~ 67079126 (-)
LOC110528308 LOC106583558 other upstream 1304506 67245800 ~ 67276081 (-)
G639226 LOC106583551 other upstream 1472730 67414856 ~ 67416090 (-)

Expression


Co-expression Network