Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110528296 |
| gene name | ccdc63 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 66204437 ~ 66213633 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ccdc63 | Predicted to be involved in cilium movement; outer dynein arm assembly; and spermatid development. Predicted to be active in axoneme. |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021610245.2 | False | 3297 | mRNA | 0.47 | 10 | 66204437 | 66213633 |
| TU724242 | False | 367 | lncRNA | 0.49 | 2 | 66210139 | 66210690 |
| TU724241 | True | 682 | lncRNA | 0.47 | 1 | 66212412 | 66213093 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110528290 | LOC106583572 | coding | upstream | 89879 | 66049287 ~ 66114558 (+) |
| tacc1 | LOC106586881 | coding | upstream | 165477 | 66002466 ~ 66038960 (+) |
| ddhd2 | LOC106583313 | coding | upstream | 212577 | 65983543 ~ 65991860 (+) |
| plpp5 | ppc1b | coding | upstream | 221427 | 65975058 ~ 65983010 (+) |
| LOC110528284 | LOC106583317 | coding | upstream | 275152 | 65909182 ~ 65929285 (+) |
| myorg | kiaa1161 | coding | downstream | 97378 | 66311011 ~ 66319207 (+) |
| LOC110529005 | LOC106583566 | coding | downstream | 717405 | 66931038 ~ 67049072 (+) |
| LOC110528302 | LOC106583563 | coding | downstream | 888469 | 67102102 ~ 67112227 (+) |
| LOC110528303 | LOC106583562 | coding | downstream | 908558 | 67122191 ~ 67130475 (+) |
| LOC110528306 | LOC106583560 | coding | downstream | 974243 | 67187876 ~ 67201857 (+) |
| G637147 | NA | non-coding | upstream | 1120 | 66203111 ~ 66203317 (+) |
| G637128 | NA | non-coding | upstream | 30885 | 66172845 ~ 66173552 (+) |
| G637127 | NA | non-coding | upstream | 32830 | 66171328 ~ 66171607 (+) |
| G637122 | NA | non-coding | upstream | 39429 | 66164750 ~ 66165008 (+) |
| G637106 | NA | non-coding | upstream | 68881 | 66132441 ~ 66135556 (+) |
| G637153 | LOC106581772 | non-coding | downstream | 3764 | 66217397 ~ 66217645 (+) |
| G637158 | NA | non-coding | downstream | 9996 | 66223629 ~ 66225563 (+) |
| G637208 | NA | non-coding | downstream | 65757 | 66279390 ~ 66280057 (+) |
| G637246 | NA | non-coding | downstream | 125008 | 66338641 ~ 66401340 (+) |
| G637299 | NA | non-coding | downstream | 206871 | 66420504 ~ 66432090 (+) |
| LOC110528281 | LOC106565490 | other | upstream | 296618 | 65901905 ~ 65908098 (+) |
| G635848 | NA | other | upstream | 874145 | 65329936 ~ 65330292 (+) |
| G635769 | NA | other | upstream | 1152281 | 65051644 ~ 65052156 (+) |
| G635635 | NA | other | upstream | 1418044 | 64785216 ~ 64786393 (+) |
| G635332 | LOC100380681 | other | upstream | 1878178 | 64318200 ~ 64326259 (+) |
| G637929 | NA | other | downstream | 338955 | 66552588 ~ 66607744 (+) |
| G638011 | NA | other | downstream | 408053 | 66621686 ~ 66622094 (+) |
| patz1 | LOC106583552 | other | downstream | 1226899 | 67433792 ~ 67446077 (+) |
| G639648 | NA | other | downstream | 1999885 | 68213518 ~ 68214402 (+) |
| LOC110528344 | LOC106583528 | other | downstream | 2540430 | 68568757 ~ 68790841 (+) |
