LOC110529002 (LOC104927948)


Basic Information

Item Value
gene id LOC110529002
gene name LOC104927948
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 66213861 ~ 66216016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110529002
ATGTCTTTAACTGGCGCTAGCATAAATCAATTCAGGGTAGATCAACCCACCAGCCTTCATGGATCTACTCCTTTTCTCCTTTTCCACCTCCCGCCGAaggtacccaagaaggcaaagaagAAGTCCGCAGAGGGAGCCAACTCTAATGTATTTTCTATCTTTGAGCAGTCTCAAATCCAGGAGTTCAACGAGGCATTCACCATCATGGACCAAAACCGAGAAGGATTCATTGACAAACACGACTTGAGGGACACCTTTGCTGCACTGGGCCGTCTCAACGTGAAGCAAAGGGAGATAGATGAGATGCTGAAAGAAGCGTTGGGCCCAGTCAACTTCACCATGTTTGGAGAGAAGCTAAAAGGCGCTGATCCAGAGGAAACTATCCTCAACGCATTTAAAGTATTTGATCCTGAAGGAAAACGGGTCCTGAGGAAGGACTCTGTGACCGAGATACTGACGACACAAGCGGACAGATTTTCTCCTGAAGAGATGGAGCAAATGTTTGCAGCATCCCACCAGATGTGGCAGGAAATCTAGACTACAAAAACCTTGTCCACATCATCATACATGGAGAAGAGAAGGACCAGGagtaactaactaactcactGCTCCTATAGCGTGTCTGTTAGTGACAGAAATAGAAGCTCTTGACTGGAGACTCTA

Function

NR:

description
PREDICTED: myosin regulatory light chain 2, ventricular/cardiac muscle isoform

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110529002 True 663 mRNA 0.46 6 66213861 66216016

Neighbor

gene id symbol gene type direction distance location
LOC110528295 LOC106583570 coding downstream 9548 66140229 ~ 66204313 (-)
LOC110528292 LOC106565377 coding downstream 81661 66127919 ~ 66132200 (-)
LOC118965412 NA coding downstream 83544 66130189 ~ 66130317 (-)
LOC118965411 NA coding downstream 84058 66129661 ~ 66129803 (-)
LOC118965413 NA coding downstream 85494 66128239 ~ 66128367 (-)
LOC110528298 LOC106583567 coding upstream 7576 66223587 ~ 66275633 (-)
LOC110529003 LOC106583569 coding upstream 77270 66293286 ~ 66297208 (-)
LOC110528300 LOC106583565 coding upstream 839174 67055190 ~ 67079126 (-)
LOC110529006 LOC106565368 coding upstream 863267 67079283 ~ 67092617 (-)
LOC110528304 LOC106583561 coding upstream 944920 67160936 ~ 67177650 (-)
G637694 NA non-coding downstream 385 66212119 ~ 66213476 (-)
G637692 NA non-coding downstream 8496 66205127 ~ 66205365 (-)
G637690 NA non-coding downstream 13487 66199847 ~ 66200374 (-)
G637679 NA non-coding downstream 24551 66189103 ~ 66189310 (-)
G637670 NA non-coding downstream 35620 66178040 ~ 66178241 (-)
G637724 NA non-coding upstream 63017 66279033 ~ 66279290 (-)
G637817 NA non-coding upstream 204997 66421013 ~ 66432198 (-)
G637893 NA non-coding upstream 306497 66522513 ~ 66523052 (-)
G637910 NA non-coding upstream 321702 66537718 ~ 66537921 (-)
G637669 NA other downstream 35966 66175960 ~ 66177895 (-)
G637504 LOC106583318 other downstream 321459 65886936 ~ 65892402 (-)
G637495 NA other downstream 331305 65881012 ~ 65882556 (-)
G636719 NA other downstream 718704 65493790 ~ 65495157 (-)
G636571 LOC106583344 other downstream 976980 65209760 ~ 65236881 (-)
G637722 NA other upstream 60766 66276782 ~ 66277080 (-)
LOC110528308 LOC106583558 other upstream 1030616 67245800 ~ 67276081 (-)
G639226 LOC106583551 other upstream 1198840 67414856 ~ 67416090 (-)
G641364 NA other upstream 2578578 68794594 ~ 68809149 (-)

Expression


Co-expression Network