Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110529005 |
| gene name | LOC106583566 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 66931038 ~ 67049072 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: CUGBP Elav-like family member 4 isoform X2 |
| id | name | namespace |
|---|---|---|
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036983883.1 | False | 3296 | mRNA | 0.47 | 14 | 66931038 | 67049072 |
| XM_036983884.1 | False | 3293 | mRNA | 0.47 | 14 | 66931038 | 67049072 |
| XM_036983885.1 | False | 3293 | mRNA | 0.47 | 14 | 66931038 | 67049072 |
| XM_036983886.1 | False | 3275 | mRNA | 0.48 | 14 | 66931038 | 67049072 |
| XM_036983887.1 | False | 3272 | mRNA | 0.48 | 14 | 66931038 | 67049072 |
| XM_036983888.1 | False | 3272 | mRNA | 0.48 | 14 | 66931038 | 67049072 |
| XM_036983889.1 | False | 3236 | mRNA | 0.48 | 14 | 66931038 | 67049072 |
| XM_036983893.1 | False | 3215 | mRNA | 0.48 | 14 | 66931038 | 67049072 |
| XM_036983894.1 | False | 3212 | mRNA | 0.48 | 14 | 66931038 | 67049072 |
| XM_036983890.1 | False | 2706 | mRNA | 0.48 | 14 | 66961970 | 67049072 |
| XM_036983892.1 | False | 2685 | mRNA | 0.48 | 14 | 66961970 | 67049072 |
| XM_036983891.1 | True | 2698 | mRNA | 0.48 | 14 | 66961975 | 67049072 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| myorg | kiaa1161 | coding | upstream | 611831 | 66311011 ~ 66319207 (+) |
| LOC110528296 | ccdc63 | coding | upstream | 717405 | 66204437 ~ 66213633 (+) |
| LOC110528290 | LOC106583572 | coding | upstream | 816480 | 66049287 ~ 66114558 (+) |
| tacc1 | LOC106586881 | coding | upstream | 892078 | 66002466 ~ 66038960 (+) |
| ddhd2 | LOC106583313 | coding | upstream | 939178 | 65983543 ~ 65991860 (+) |
| LOC110528302 | LOC106583563 | coding | downstream | 53030 | 67102102 ~ 67112227 (+) |
| LOC110528303 | LOC106583562 | coding | downstream | 73119 | 67122191 ~ 67130475 (+) |
| LOC110528306 | LOC106583560 | coding | downstream | 138804 | 67187876 ~ 67201857 (+) |
| LOC110528310 | LOC106583556 | coding | downstream | 300817 | 67349886 ~ 67352106 (+) |
| LOC110528313 | NA | coding | downstream | 313461 | 67362040 ~ 67364096 (+) |
| G638334 | NA | non-coding | upstream | 46250 | 66884373 ~ 66884788 (+) |
| G638322 | NA | non-coding | upstream | 47947 | 66862885 ~ 66883091 (+) |
| G638314 | NA | non-coding | upstream | 73585 | 66857247 ~ 66857453 (+) |
| G638283 | NA | non-coding | upstream | 104177 | 66826578 ~ 66826861 (+) |
| G638276 | NA | non-coding | upstream | 108367 | 66822393 ~ 66822671 (+) |
| G638461 | NA | non-coding | downstream | 12820 | 67061892 ~ 67073060 (+) |
| G638497 | NA | non-coding | downstream | 52607 | 67101679 ~ 67101894 (+) |
| G638504 | NA | non-coding | downstream | 70248 | 67119320 ~ 67119756 (+) |
| G638536 | LOC106565361 | non-coding | downstream | 130853 | 67179925 ~ 67180514 (+) |
| G638534 | NA | non-coding | downstream | 153019 | 67202091 ~ 67204994 (+) |
| G638011 | NA | other | upstream | 308944 | 66621686 ~ 66622094 (+) |
| G637929 | NA | other | upstream | 323294 | 66552588 ~ 66607744 (+) |
| LOC110528281 | LOC106565490 | other | upstream | 1023219 | 65901905 ~ 65908098 (+) |
| G635848 | NA | other | upstream | 1600746 | 65329936 ~ 65330292 (+) |
| G635769 | NA | other | upstream | 1878882 | 65051644 ~ 65052156 (+) |
| patz1 | LOC106583552 | other | downstream | 391460 | 67433792 ~ 67446077 (+) |
| G639648 | NA | other | downstream | 1164446 | 68213518 ~ 68214402 (+) |
| LOC110528344 | LOC106583528 | other | downstream | 1704991 | 68568757 ~ 68790841 (+) |
| G640523 | NA | other | downstream | 1872554 | 68921626 ~ 68927219 (+) |
| G640895 | NA | other | downstream | 2539219 | 69588291 ~ 69589664 (+) |
