Gene
RNA
| Item | Value |
|---|---|
| gene id | patz1 |
| gene name | LOC106583552 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 67433792 ~ 67446077 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| TC1-like transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021610287.2 | False | 4690 | mRNA | 0.46 | 5 | 67433792 | 67444733 |
| XM_021610288.2 | False | 4489 | mRNA | 0.45 | 4 | 67433792 | 67444733 |
| XM_036983900.1 | False | 4642 | mRNA | 0.46 | 5 | 67433792 | 67444733 |
| TU725913 | False | 1069 | TUCP | 0.52 | 2 | 67440532 | 67443037 |
| TU725911 | True | 1772 | TUCP | 0.43 | 1 | 67444306 | 67446077 |
67,420,000
67,422,000
67,424,000
67,426,000
67,428,000
67,430,000
67,432,000
67,434,000
67,436,000
67,438,000
67,440,000
67,442,000
67,444,000
67,446,000
NC_048571.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| eif4enif1 | LOC106583551 | coding | upstream | 376 | 67412780 ~ 67433416 (+) |
| c7h1orf74 | cssa22h1orf74 | coding | upstream | 62957 | 67367332 ~ 67370835 (+) |
| LOC110528313 | NA | coding | upstream | 70076 | 67362040 ~ 67364096 (+) |
| LOC110528310 | LOC106583556 | coding | upstream | 81686 | 67349886 ~ 67352106 (+) |
| LOC110528306 | LOC106583560 | coding | upstream | 231935 | 67187876 ~ 67201857 (+) |
| LOC110528319 | LOC106583550 | coding | downstream | 34992 | 67479725 ~ 67491992 (+) |
| entpd8 | LOC106583547 | coding | downstream | 87920 | 67532653 ~ 67542621 (+) |
| fkbp5 | LOC106565346 | coding | downstream | 150009 | 67594742 ~ 67643116 (+) |
| slc6a22.2 | LOC106583541 | coding | downstream | 250713 | 67695446 ~ 67709917 (+) |
| LOC110528330 | LOC106583540 | coding | downstream | 303580 | 67748313 ~ 67769581 (+) |
| G638633 | NA | non-coding | upstream | 54270 | 67379300 ~ 67379522 (+) |
| G638629 | NA | non-coding | upstream | 68675 | 67364892 ~ 67365117 (+) |
| G638620 | NA | non-coding | upstream | 80678 | 67352908 ~ 67353114 (+) |
| G638617 | NA | non-coding | upstream | 83245 | 67350328 ~ 67350547 (+) |
| G638662 | NA | non-coding | downstream | 1868 | 67446601 ~ 67455147 (+) |
| G638671 | NA | non-coding | downstream | 16795 | 67461528 ~ 67461827 (+) |
| G638675 | NA | non-coding | downstream | 21929 | 67466662 ~ 67466959 (+) |
| G638686 | NA | non-coding | downstream | 49251 | 67493984 ~ 67494311 (+) |
| G638687 | NA | non-coding | downstream | 49866 | 67494599 ~ 67495419 (+) |
| G638011 | NA | other | upstream | 811698 | 66621686 ~ 66622094 (+) |
| G637929 | NA | other | upstream | 826048 | 66552588 ~ 66607744 (+) |
| LOC110528281 | LOC106565490 | other | upstream | 1525973 | 65901905 ~ 65908098 (+) |
| G635848 | NA | other | upstream | 2103500 | 65329936 ~ 65330292 (+) |
| G635769 | NA | other | upstream | 2381636 | 65051644 ~ 65052156 (+) |
| G639648 | NA | other | downstream | 768785 | 68213518 ~ 68214402 (+) |
| LOC110528344 | LOC106583528 | other | downstream | 1309330 | 68568757 ~ 68790841 (+) |
| G640523 | NA | other | downstream | 1476893 | 68921626 ~ 68927219 (+) |
| G640895 | NA | other | downstream | 2143558 | 69588291 ~ 69589664 (+) |
| LOC110528363 | LOC106583503 | other | downstream | 2346606 | 69708160 ~ 69796822 (+) |
