LOC110528329 (LOC106583540)


Basic Information

Item Value
gene id LOC110528329
gene name LOC106583540
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 67766552 ~ 67770608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610312.2
CTAGACTGCAGCTAGAGCAGATTCTCCACTTTTCATCTCAACCACTCCCTGGTTAAAGATGCAGAACGGCACTGAAGGAAACAACTTCTACATCCCCATGTCCAACAGGACTGGGCTTGTAAGGAGTCCCTTTGAATACCCTCAGTACTACTTGGCGGATCCATGGCAATTCTATCTGCTTGCTGTCTACATGTTTTTCCTGATCTGTTTTGGATTCCCCATCAACGGTCTGACCTTGTACGTCACAGCGACAAACAAGAAGCTCCAGCAACCCCTCAACTTCATTCTGGTCAACTTGGCTGCAGCTGGAATGATCATGGTAATGTTTGGATTCACCATCACCATTACATCTGCTGTCAATGGCTACTTCGTCTTTGGACCTATGGGCTGTGCCATCGAGGGTTTCATGGCTACACTTGGAGGTCAGGTTGCTCTGTGGTCTCTGGTGGTGCTGGCCATTGAGAGATACATTGTCGTCTGCAAGCCCATGGGCAGCTTCACATTCACTACCACCCACGCTGGTGCCGGATGTGCATTCACCTGGGTCATGGCAATGGCCTGTGCTGCCCCCCCATTGGTTGGCTGGTCTAGATATATCCCAGAGGGCATGCAGTGCTCATGTGGACCTGATTACTACACCTTGGCCGAAGGCTTCAACAATGAATCATATGTGATCTACATGTTCTCCTGCCACTTCTGTGTTCCTGTCGTCACCATCTTCTTCACGTACGGAAGCCTTGTCCTCACAGTCAAGGCGGCTGCAGCTTCCCAGCAGGACTCAGCATCTACCCAGAAAGCTGAGAAGGAAGTGACACGTATGTGCTTCCTGATGGTTTGTGGTTTTCTGATTGCCTGGACCCCCTATGCCAGCTTTGCTGCCTGGATTTTCTTCAACAAAGGAGCTGCCTTTACAGCCACAGCCATGGCTATTCCAGCCTTCTTCTCAAAGAGCTCAGCCATCTTCAACCCAGTCATCTATGTGTTGATGAACAAACAGttccgTAGCTGCATGTTGGCTGCTGTAGGAATTAGTTCAGGAGCTGAAGATGAGACCTCTGTGTCAGCAAGCAAGACAGAAGTGTCCTCTGTGGGCCCTGCATAACAACTTCAAAggattacattttttacatgaaCTGGCATATTTTCAATTAGGTAGATTTATTTTCTAATCAGAAGATGCCCTCTTACAGTACAGTCCTCAAAACACAAAACATTGCTTAATCAAACATAGCCCATTTTTATTGTGCAATATATGTTGTATTTCCTTAGACCACCAGAGCACAGGAGAACTTTCAAGTTGTGATTTTTCATTTTTTCCCAGCAAGTTGAATCCTCAAGAGTTTTCATGACGAACCACTTGAAGGTTTTGTTATAGCTCCGTAGCTTTGGGCACTCTTCAAAGTGAGACAAACAATTCCTCTCTGAGCAACACCTGCATTAATGAACAGCAATACCACTAAAAGGCAAGTCATGCTACTTTGACACAAAGTGGATTCTTGCCAATTATGGGTGGTTGCAGGTAGCatagcagttaagagcattgaGCCAGTACCTGAAGAGTCACTTGTCTGAATCCCttagccaactaggtgaaaaatatgtccATGTGCCCTTGATTGAGCTACgcatttaaccctaattgctcctgtacaGTAAGTCACTCTGGggaagagtgtctgctaaattactaaaatataaatgtaattacACTGCACACATCAAGGCGTCTCTACTCTTTCAAAAATCTGCACTTGGTATATTGACTGTCATTTATGTTAAGAGGGTGACATACATACCAAATCATAGCTGAGGTGGAAAGATACCTATTGTGAATGGTTGAGCTTTGGAATGACATACTGAACTACTTTCATACTTTGACGATGAAGGATTGAGATTTAATTGGTACAATGTGAGGCTACATACGTGTGGCTTTTGTTGGCCACTTGTATATTATCATTTGCTGAATACATTTTATAAATACTTCTTATGAAAATGTTATTCTAGATTAATAAATGCA

Function

NR:

description
green-sensitive opsin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610312.2 True 2017 mRNA 0.44 5 67766552 67770608

Neighbor

gene id symbol gene type direction distance location
slc6a22.2 LOC106583541 coding upstream 56635 67695446 ~ 67709917 (+)
fkbp5 LOC106565346 coding upstream 123436 67594742 ~ 67643116 (+)
entpd8 LOC106583547 coding upstream 223931 67532653 ~ 67542621 (+)
LOC110528319 LOC106583550 coding upstream 274560 67479725 ~ 67491992 (+)
patz1 LOC106583552 coding upstream 321819 67433792 ~ 67446077 (+)
LOC110528331 LOC106583539 coding downstream 12371 67782979 ~ 67786378 (+)
LOC100135985 LOC100135985 coding downstream 22019 67792627 ~ 67794877 (+)
LOC110528332 LOC106583538 coding downstream 31838 67802446 ~ 67808271 (+)
LOC110528334 cav3 coding downstream 85014 67855622 ~ 67862229 (+)
LOC110529007 LOC106583533 coding downstream 306842 68077450 ~ 68092440 (+)
G638703 NA non-coding upstream 46486 67658474 ~ 67720066 (+)
G638738 NA non-coding upstream 179066 67582471 ~ 67587486 (+)
G638691 NA non-coding upstream 190222 67569885 ~ 67576330 (+)
G638698 LOC106583546 non-coding upstream 209129 67545037 ~ 67557423 (+)
G638687 NA non-coding upstream 271133 67494599 ~ 67495419 (+)
G638840 NA non-coding downstream 39629 67810237 ~ 67810514 (+)
G638843 NA non-coding downstream 42274 67812882 ~ 67813094 (+)
G638847 NA non-coding downstream 51240 67821848 ~ 67822062 (+)
G638858 LOC106583392 non-coding downstream 63212 67833820 ~ 67835405 (+)
G638882 LOC106583536 non-coding downstream 107383 67877991 ~ 67878254 (+)
G638011 NA other upstream 1144458 66621686 ~ 66622094 (+)
G637929 NA other upstream 1158808 66552588 ~ 66607744 (+)
LOC110528281 LOC106565490 other upstream 1858733 65901905 ~ 65908098 (+)
G635848 NA other upstream 2436260 65329936 ~ 65330292 (+)
G639648 NA other downstream 442910 68213518 ~ 68214402 (+)
LOC110528344 LOC106583528 other downstream 983455 68568757 ~ 68790841 (+)
G640523 NA other downstream 1151018 68921626 ~ 68927219 (+)
G640895 NA other downstream 1817683 69588291 ~ 69589664 (+)
LOC110528363 LOC106583503 other downstream 2020731 69708160 ~ 69796822 (+)

Expression

LOC110528329(LOC106583540) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 75.
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LOC110528329(LOC106583540) Expression in each Bioproject

Bar chart with 6 bars.
LOC110528329(LOC106583540) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6000.
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Co-expression Network